RLG00000022204

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006261
Physical Location & Seq
Reverse (-)
81683914 .. 81686432
2519 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022204

Sequence Viewer

Length: 888 bp
ATGTCAGAAGCTGCAAAAGATTTGGTTGGTTCGAGTAAACGCCAAAAATTAGGACCAGACTACTTTGGTTACTATACACATGAAGTGGTAGAGTTGTTGTCACGAAATGAAGATGTTTCACCTTTTGCTTCCGAATCCTCAGATATATCTCAAAGCAGATATGTGGAGGTTAGGGGCAAGGATAGGATTGAGCATAGTAATGGTGTGTCTGGTTCGTTGTTTAGTAACAGCCTAGGAAATGAGCTCTCAGATTTCAGAAAAGAAAGATTGAAGTTGTTGCTCAGACAGGGTGTTAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGCTATGAGCAAGTTAAAATCAGAGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAATGATGTTGATGCAGGGAAAGCACCTTCTCCTAAGAAACTAAAGAGATCTTCATGCTCTTCGAGTAGCCTCTCTGCACTTTCTAGTCCCACCAATTCCGAATCGAACAGAGAGGTTGATGATGACTGGCAGTTCCTTATAGAGAACAACAGCTTGCAGGTTGAGGAGACGGTAAAAAAATATTGTGATCAATATTATGCAAAGCTAGGGCACATGGAGCAGCAACTTCAGAAAATTCTTGATACTGTGATGTCCAAGTGCAGGCCTATGACCATCCATGAGAAGCACAAGCTTGGAAAACTGATTCAGAAGTTACCACCAGAAAACCTTGACCGTGTTATGGAAATTATCCAGAATAGCAACGCAGCTTATACAAATTCCTCAGATGAAGTTTCTGTGGATCTTGAAAAGGAGTCTAATGTAACCCTTTGGAGATTGTTTCATTACGTAGAAGCAGTTGAGAATGCTAGAAAGCTCGCAAGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET

Protein Analysis

296

Amino Acids

33.17

Weight (kDa)

5.96

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 222 - 284 7.9e-20 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 547
AclWI GGATC 1 cut(s) 807
AcsI RAATTY 2 cut(s) 633, 775
AcuI CTGAAG 1 cut(s) 611
AfiI CCNNNNNNNGG 2 cut(s) 660, 739
AgsI TTSAA 2 cut(s) 271, 806
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 1 cut(s) 807
AlwNI CAGNNNCTG 1 cut(s) 11
AoxI GGCC 1 cut(s) 662
ApeKI GCWGC 4 cut(s) 11, 395, 619, 764
ApoI RAATTY 2 cut(s) 633, 775
AspA2I CCTAGG 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 111
AvaII GGWCC 1 cut(s) 53
AvrII CCTAGG 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 612
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 407, 631, 776
BccI CCATC 1 cut(s) 680
BclI TGATCA 1 cut(s) 586
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 5 cut(s) 233, 365, 483, 605, 867
BfuAI ACCTGC 1 cut(s) 547
BglII AGATCT 1 cut(s) 446
BisI GCNGC 4 cut(s) 12, 396, 620, 765
BlnI CCTAGG 1 cut(s) 232
BlsI GCNGC 4 cut(s) 13, 397, 621, 766
Bme18I GGWCC 1 cut(s) 53
BmgT120I GGNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 400
BsaAI YACGTR 1 cut(s) 847
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 2 cut(s) 660, 739
Bse1I ACTGG 1 cut(s) 530
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 672
BseLI CCNNNNNNNGG 2 cut(s) 660, 739
BseMII CTCAG 4 cut(s) 153, 261, 295, 795
BseNI ACTGG 1 cut(s) 530
BseRI GAGGAG 1 cut(s) 578
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 3 cut(s) 407, 631, 776
BsgI GTGCAG 3 cut(s) 414, 459, 679
BshFI GGCC 1 cut(s) 664
BsiHKAI GWGCWC 1 cut(s) 246
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 2 cut(s) 660, 739
BsmAI GTCTC 1 cut(s) 560
BsmBI CGTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 471
BsmI GAATGC 1 cut(s) 868
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 2 cut(s) 246, 612
Bsp143I GATC 3 cut(s) 446, 586, 799
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 4 cut(s) 152, 260, 294, 794
BspMI ACCTGC 1 cut(s) 547
BspPI GGATC 1 cut(s) 807
BspQI GCTCTTC 1 cut(s) 463
BsrI ACTGG 1 cut(s) 530
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 446, 586, 799
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 3 cut(s) 571, 646, 734
Bst6I CTCTTC 1 cut(s) 463
BstBAI YACGTR 1 cut(s) 847
BstC8I GCNNGC 3 cut(s) 554, 662, 876
BstDEI CTNAG 5 cut(s) 139, 247, 281, 432, 781
BstF5I GGATG 1 cut(s) 672
BstKTI GATC 3 cut(s) 449, 589, 802
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 3 cut(s) 446, 586, 799
BstMWI GCNNNNNNNGC 2 cut(s) 419, 616
BstSLI GKGCMC 1 cut(s) 612
BstSNI TACGTA 1 cut(s) 847
BstV1I GCAGC 3 cut(s) 407, 631, 776
BstX2I RGATCY 2 cut(s) 446, 799
BstYI RGATCY 2 cut(s) 446, 799
BsuRI GGCC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 672
BveI ACCTGC 1 cut(s) 547
Cac8I GCNNGC 3 cut(s) 554, 662, 876
CaiI CAGNNNCTG 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 53
CviAII CATG 4 cut(s) 80, 453, 613, 677
DdeI CTNAG 5 cut(s) 139, 247, 281, 432, 781
DpnI GATC 3 cut(s) 448, 588, 801
DpnII GATC 3 cut(s) 446, 586, 799
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Ecl136II GAGCTC 1 cut(s) 244
Eco105I TACGTA 1 cut(s) 847
Eco130I CCWWGG 1 cut(s) 232
Eco147I AGGCCT 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 560
FaeI CATG 4 cut(s) 83, 456, 616, 680
FaqI GGGAC 1 cut(s) 471
FatI CATG 4 cut(s) 79, 452, 612, 676
FbaI TGATCA 1 cut(s) 586
Fnu4HI GCNGC 4 cut(s) 12, 396, 620, 765
FokI GGATG 1 cut(s) 659
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 4 cut(s) 12, 396, 620, 765
FspBI CTAG 5 cut(s) 233, 365, 483, 605, 867
GluI GCNGC 4 cut(s) 12, 396, 620, 765
HaeIII GGCC 1 cut(s) 664
Hin1II CATG 4 cut(s) 83, 456, 616, 680
HindIII AAGCTT 1 cut(s) 689
HinfI GANTC 4 cut(s) 134, 500, 703, 812
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 1 cut(s) 38
Hpy188III TCNNGA 5 cut(s) 102, 387, 638, 751, 803
Hpy8I GTNNAC 1 cut(s) 38
HpyAV CCTTC 1 cut(s) 435
HpyCH4III ACNGT 3 cut(s) 571, 646, 734
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 8 cut(s) 14, 305, 395, 413, 476, 556, 599, 660
HpyF10VI GCNNNNNNNGC 2 cut(s) 419, 616
HpyF3I CTNAG 5 cut(s) 139, 247, 281, 432, 781
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 4 cut(s) 83, 456, 616, 680
Ksp22I TGATCA 1 cut(s) 586
Kzo9I GATC 3 cut(s) 446, 586, 799
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 1 cut(s) 616
Lsp1109I GCAGC 3 cut(s) 407, 631, 776
LweI GCATC 1 cut(s) 400
MaeI CTAG 5 cut(s) 233, 365, 483, 605, 867
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 5 cut(s) 68, 99, 224, 711, 820
MalI GATC 3 cut(s) 448, 588, 801
MboI GATC 3 cut(s) 446, 586, 799
MboII GAAGA 3 cut(s) 122, 441, 450
MflI RGATCY 2 cut(s) 446, 799
MhlI GDGCHC 2 cut(s) 246, 612
MluCI AATT 5 cut(s) 47, 493, 633, 744, 775
MlyI GAGTC 1 cut(s) 821
MnlI CCTC 7 cut(s) 148, 160, 383, 479, 505, 556, 790
MseI TTAA 2 cut(s) 294, 353
MslI CAYNNNNRTG 1 cut(s) 198
Mva1269I GAATGC 1 cut(s) 868
MwoI GCNNNNNNNGC 2 cut(s) 419, 616
NdeII GATC 3 cut(s) 446, 586, 799
NlaIII CATG 4 cut(s) 83, 456, 616, 680
NmuCI GTSAC 1 cut(s) 99
PceI AGGCCT 1 cut(s) 664
PciSI GCTCTTC 1 cut(s) 463
PctI GAATGC 1 cut(s) 868
PfeI GAWTC 3 cut(s) 134, 500, 703
PkrI GCNGC 4 cut(s) 13, 397, 621, 766
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 847
Psp124BI GAGCTC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 53
PstNI CAGNNNCTG 1 cut(s) 11
PsuI RGATCY 2 cut(s) 446, 799
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 2 cut(s) 294, 353
SatI GCNGC 4 cut(s) 12, 396, 620, 765
Sau3AI GATC 3 cut(s) 446, 586, 799
Sau96I GGNCC 1 cut(s) 53
SchI GAGTC 1 cut(s) 821
SduI GDGCHC 2 cut(s) 246, 612
SfaNI GCATC 1 cut(s) 400
SinI GGWCC 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 198
SnaBI TACGTA 1 cut(s) 847
Sse9I AATT 5 cut(s) 47, 493, 633, 744, 775
SseBI AGGCCT 1 cut(s) 664
SspI AATATT 2 cut(s) 581, 593
SspMI CTAG 5 cut(s) 233, 365, 483, 605, 867
SstI GAGCTC 1 cut(s) 246
StuI AGGCCT 1 cut(s) 664
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 571, 646, 734
TaiI ACGT 1 cut(s) 849
TaqI TCGA 3 cut(s) 32, 461, 503
TasI AATT 5 cut(s) 47, 493, 633, 744, 775
TfiI GAWTC 3 cut(s) 134, 500, 703
Tru1I TTAA 2 cut(s) 294, 353
Tru9I TTAA 2 cut(s) 294, 353
TseFI GTSAC 1 cut(s) 99
TseI GCWGC 4 cut(s) 11, 395, 619, 764
Tsp45I GTSAC 1 cut(s) 99
TspDTI ATGAA 5 cut(s) 96, 123, 441, 801, 830
VpaK11BI GGWCC 1 cut(s) 53
XapI RAATTY 2 cut(s) 633, 775
XmaJI CCTAGG 1 cut(s) 232
XspI CTAG 5 cut(s) 233, 365, 483, 605, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.