Bromodomain extra-terminal - transcription regulation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600 |
| fragaria_vesca | FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 |
| malus_domestica | MD09G1020300.v1.1 |
| prunus_persica | Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1 |
| pyrus_communis | pycom111g01700 pycom17g01750 |
| rosa_chinensis | RchiOBHm_Chr2g0173581 |
| rosa_laevigata | RLG00000022204 |
| rosa_multiflora | Rmu_sc0002538.1_g000021 |
| rosa_roxburghii | Rroxscaffold_2G00078760 |
| rosa_rugosa | Rorug02G0571500 Rorug02G0571500 |
| rosa_samantha | Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100 |
| rosa_wichuraiana | Rw2G053380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 92 |
| AclWI | GGATC | 1 cut(s) | 94 |
| AcsI | RAATTY | 2 cut(s) | 127, 141 |
| AfaI | GTAC | 1 cut(s) | 236 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 12, 91 |
| AgsI | TTSAA | 2 cut(s) | 158, 203 |
| AluBI | AGCT | 4 cut(s) | 43, 119, 218, 226 |
| AluI | AGCT | 4 cut(s) | 43, 119, 218, 226 |
| Alw26I | GTCTC | 1 cut(s) | 178 |
| AlwI | GGATC | 1 cut(s) | 94 |
| AoxI | GGCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 116 |
| ApoI | RAATTY | 2 cut(s) | 127, 141 |
| AspS9I | GGNCC | 1 cut(s) | 151 |
| AsuHPI | GGTGA | 2 cut(s) | 41, 123 |
| AvaII | GGWCC | 1 cut(s) | 151 |
| BbvI | GCAGC | 1 cut(s) | 128 |
| BcoDI | GTCTC | 1 cut(s) | 178 |
| BfaI | CTAG | 1 cut(s) | 219 |
| BisI | GCNGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 1 cut(s) | 118 |
| Bme18I | GGWCC | 1 cut(s) | 151 |
| BmgT120I | GGNCC | 1 cut(s) | 151 |
| BsaJI | CCNNGG | 1 cut(s) | 25 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 12, 91 |
| Bse1I | ACTGG | 1 cut(s) | 243 |
| BseDI | CCNNGG | 1 cut(s) | 25 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 12, 91 |
| BseNI | ACTGG | 1 cut(s) | 243 |
| BseXI | GCAGC | 1 cut(s) | 128 |
| BshFI | GGCC | 1 cut(s) | 16 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 12, 91 |
| BsmAI | GTCTC | 1 cut(s) | 178 |
| BsnI | GGCC | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 99 |
| BspACI | CCGC | 1 cut(s) | 92 |
| BspANI | GGCC | 1 cut(s) | 16 |
| BspPI | GGATC | 1 cut(s) | 94 |
| BsrI | ACTGG | 1 cut(s) | 243 |
| BssECI | CCNNGG | 1 cut(s) | 25 |
| BssMI | GATC | 1 cut(s) | 99 |
| BssT1I | CCWWGG | 1 cut(s) | 25 |
| Bst4CI | ACNGT | 1 cut(s) | 189 |
| BstC8I | GCNNGC | 2 cut(s) | 14, 228 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 10 |
| BstKTI | GATC | 1 cut(s) | 102 |
| BstMAI | GTCTC | 1 cut(s) | 178 |
| BstMBI | GATC | 1 cut(s) | 99 |
| BstV1I | GCAGC | 1 cut(s) | 128 |
| BsuRI | GGCC | 1 cut(s) | 16 |
| BtsIMutI | CAGTG | 2 cut(s) | 250, 254 |
| Cac8I | GCNNGC | 2 cut(s) | 14, 228 |
| Cfr13I | GGNCC | 1 cut(s) | 151 |
| Csp6I | GTAC | 1 cut(s) | 235 |
| CviAII | CATG | 1 cut(s) | 86 |
| CviJI | RGCY | 6 cut(s) | 16, 43, 119, 218, 226, 267 |
| CviKI_1 | RGCY | 6 cut(s) | 16, 43, 119, 218, 226, 267 |
| CviQI | GTAC | 1 cut(s) | 235 |
| DpnI | GATC | 1 cut(s) | 101 |
| DpnII | GATC | 1 cut(s) | 99 |
| Eco130I | CCWWGG | 1 cut(s) | 25 |
| Eco47I | GGWCC | 1 cut(s) | 151 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 10 |
| EcoT14I | CCWWGG | 1 cut(s) | 25 |
| ErhI | CCWWGG | 1 cut(s) | 25 |
| FaeI | CATG | 1 cut(s) | 89 |
| FaiI | YATR | 5 cut(s) | 87, 108, 123, 173, 198 |
| FatI | CATG | 1 cut(s) | 85 |
| Fnu4HI | GCNGC | 1 cut(s) | 117 |
| Fsp4HI | GCNGC | 1 cut(s) | 117 |
| FspBI | CTAG | 1 cut(s) | 219 |
| GluI | GCNGC | 1 cut(s) | 117 |
| HaeIII | GGCC | 1 cut(s) | 16 |
| Hin1II | CATG | 1 cut(s) | 89 |
| HindIII | AAGCTT | 1 cut(s) | 41 |
| HinfI | GANTC | 3 cut(s) | 55, 239, 259 |
| HphI | GGTGA | 2 cut(s) | 41, 123 |
| Hpy166II | GTNNAC | 2 cut(s) | 151, 254 |
| Hpy188I | TCNGA | 1 cut(s) | 60 |
| Hpy188III | TCNNGA | 2 cut(s) | 80, 211 |
| Hpy8I | GTNNAC | 2 cut(s) | 151, 254 |
| HpyCH4III | ACNGT | 1 cut(s) | 189 |
| HpyCH4V | TGCA | 1 cut(s) | 12 |
| Hsp92II | CATG | 1 cut(s) | 89 |
| Kzo9I | GATC | 1 cut(s) | 99 |
| LpnPI | CCDG | 4 cut(s) | 116, 147, 248, 256 |
| Lsp1109I | GCAGC | 1 cut(s) | 128 |
| MaeI | CTAG | 1 cut(s) | 219 |
| MaeIII | GTNAC | 1 cut(s) | 63 |
| MalI | GATC | 1 cut(s) | 101 |
| MboI | GATC | 1 cut(s) | 99 |
| MluCI | AATT | 2 cut(s) | 127, 141 |
| MnlI | CCTC | 1 cut(s) | 16 |
| NdeII | GATC | 1 cut(s) | 99 |
| NlaIII | CATG | 1 cut(s) | 89 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 234 |
| PfeI | GAWTC | 3 cut(s) | 55, 239, 259 |
| PkrI | GCNGC | 1 cut(s) | 118 |
| PspPI | GGNCC | 1 cut(s) | 151 |
| RsaI | GTAC | 1 cut(s) | 236 |
| RsaNI | GTAC | 1 cut(s) | 235 |
| SatI | GCNGC | 1 cut(s) | 117 |
| Sau3AI | GATC | 1 cut(s) | 99 |
| Sau96I | GGNCC | 1 cut(s) | 151 |
| SetI | ASST | 6 cut(s) | 45, 121, 136, 156, 220, 228 |
| SinI | GGWCC | 1 cut(s) | 151 |
| Sse9I | AATT | 2 cut(s) | 127, 141 |
| SsiI | CCGC | 1 cut(s) | 92 |
| SspMI | CTAG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 25 |
| TaaI | ACNGT | 1 cut(s) | 189 |
| TaqI | TCGA | 1 cut(s) | 210 |
| TasI | AATT | 2 cut(s) | 127, 141 |
| TfiI | GAWTC | 3 cut(s) | 55, 239, 259 |
| TscAI | CASTG | 2 cut(s) | 250, 261 |
| TseI | GCWGC | 1 cut(s) | 116 |
| TspDTI | ATGAA | 1 cut(s) | 153 |
| TspRI | CASTG | 2 cut(s) | 250, 261 |
| VpaK11BI | GGWCC | 1 cut(s) | 151 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 10 |
| XapI | RAATTY | 2 cut(s) | 127, 141 |
| XspI | CTAG | 1 cut(s) | 219 |