RH2CG625700

Bromodomain extra-terminal - transcription regulation

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0006261
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG625700.1

Sequence Viewer

Length: 1170 bp
ATGCCAGCACTTCTGCATCTTTGGGATCCTGAACTCCCTGAAAAGAAGTGGAGCTTCCATTCTACGACGTCGTCACTGCCGGAATTTCTCTTTCAAATTCCGTCTCCGGCTGACCGCCTCGCCCCAGCTCGCCGCCGGTCACACACGTATGACTTGCTAGGGTTCTTGCATTTGAGCTTTCGATGCCGGAAAAGGTGTGTGACCTTAGTGGTTACTTGGCAGAGAAGAAGATTTGCTGCAGTAGAAGTGTTGTTCTGGCATAGCTGTTACGTTTGTGTTGTTATGTCAGAAGCTGCAAAAGATTTGGTTGGCTCGAGTAAACGCCAAAAATTAGGACCAGACTACTTTGGTTACTATACACATGAAGTGGTAGAGTTGTTGTCACGAAATGAAGATGTTTCACCTTTTGCTTCCGAATCCTCAGATATATCTCGAAGCAGATATGTGGAGGTTAGGGGCAAGGATAGGATTGAGCATAGTAATGGTGTGTATGGTTCGTTGTTTAGTAACAGCCTAGGGAATGAGCTCTCAGATTTCAGAAAAGAAAGATTGAAGTTGTTGCTCAGACAGGGTGTTAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGCTATGAGCCAGTTAAAATCACAGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCAGCAAGTGATGTTGATGCAGGGAAAGCACCTTCTCCTAAGAAACTAAAGAGATCTTCATGCTCTTCTAGTAGCCTCCCTGCACTTTCTAGTCCCACCAATTCCGAATCAAACAGAGAGGTCGATGATGACTGGCAGTTCCTTATAGAGAACAACAGCTTGCAGGTTGAGGAGACAGTAAAAAAATATTGTGATCAATATTATGCAAAACTAGGGCACATGGAGCAGCAGCTTGAGAAAATTCTTGATACTGTGATGTCCAAGTGCAGGCCAATGACCATCCATGAGAAGCACAAGCTTGGAAAACAGATTCAGAAGTTACCACACGAAAACCTTGGCCGTGTTATGGAAATTATCCAGAATAGCAACGCAGCTTATACGAATTCCTCGGATGAAGTTTCTGTGGATCTTGAAAAGGAGTCTAATGTAACCCTTTGGAGATTGTTTCATTACGTAGAAGCAGTTGAGAATGCTAGAAAGCTCGCAAGTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BET GATA

Protein Analysis

389

Amino Acids

44.39

Weight (kDa)

8.3

Isoelectric Point (pI)

58.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BET PF17035 316 - 378 1.5e-19 Bromodomain extra-terminal - transcription regulation
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
Acc36I ACCTGC 1 cut(s) 829
AciI CCGC 2 cut(s) 115, 133
AclWI GGATC 3 cut(s) 20, 33, 1089
AcoI YGGCCR 1 cut(s) 1012
AcsI RAATTY 4 cut(s) 83, 96, 915, 1057
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 942, 1021
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 95, 553, 1088
Alw21I GWGCWC 1 cut(s) 528
Alw26I GTCTC 2 cut(s) 108, 842
AlwI GGATC 3 cut(s) 20, 33, 1089
AlwNI CAGNNNCTG 1 cut(s) 293
Ama87I CYCGRG 1 cut(s) 313
AoxI GGCC 2 cut(s) 944, 1012
ApeKI GCWGC 6 cut(s) 236, 293, 677, 901, 904, 1046
ApoI RAATTY 4 cut(s) 83, 96, 915, 1057
AspA2I CCTAGG 1 cut(s) 514
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 514
BaeGI GKGCMC 1 cut(s) 894
BamHI GGATCC 1 cut(s) 25
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 528
BbvI GCAGC 6 cut(s) 223, 280, 689, 913, 916, 1058
BccI CCATC 1 cut(s) 962
BceAI ACGGC 1 cut(s) 999
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 108, 842
BfaI CTAG 7 cut(s) 158, 515, 647, 744, 765, 887, 1149
BfmI CTRYAG 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 829
BglII AGATCT 1 cut(s) 728
BisI GCNGC 7 cut(s) 133, 237, 294, 678, 902, 905, 1047
BlnI CCTAGG 1 cut(s) 514
BlsI GCNGC 7 cut(s) 134, 238, 295, 679, 903, 906, 1048
Bme18I GGWCC 1 cut(s) 335
BmeT110I CYCGRG 1 cut(s) 313
BmgT120I GGNCC 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 3 cut(s) 25, 173, 682
BpuEI CTTGAG 1 cut(s) 929
BsaAI YACGTR 2 cut(s) 147, 1129
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 3 cut(s) 514, 1009, 1062
Bsc4I CCNNNNNNNGG 2 cut(s) 942, 1021
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 631, 812
BseDI CCNNGG 3 cut(s) 514, 1009, 1062
BseGI GGATG 2 cut(s) 954, 1072
BseLI CCNNNNNNNGG 2 cut(s) 942, 1021
BseMII CTCAG 3 cut(s) 435, 543, 577
BseNI ACTGG 2 cut(s) 631, 812
BseRI GAGGAG 1 cut(s) 860
BseSI GKGCMC 1 cut(s) 894
BseXI GCAGC 6 cut(s) 223, 280, 689, 913, 916, 1058
BseYI CCCAGC 1 cut(s) 124
BsgI GTGCAG 3 cut(s) 696, 741, 961
BshFI GGCC 2 cut(s) 946, 1014
BsiHKAI GWGCWC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 4 cut(s) 80, 107, 136, 187
BslFI GGGAC 1 cut(s) 753
BslI CCNNNNNNNGG 2 cut(s) 942, 1021
BsmAI GTCTC 2 cut(s) 108, 842
BsmBI CGTCTC 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 753
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 2 cut(s) 946, 1014
BsoBI CYCGRG 1 cut(s) 313
Bsp1286I GDGCHC 2 cut(s) 528, 894
Bsp143I GATC 4 cut(s) 25, 728, 868, 1081
BspACI CCGC 2 cut(s) 115, 133
BspANI GGCC 2 cut(s) 946, 1014
BspCNI CTCAG 3 cut(s) 434, 542, 576
BspLI GGNNCC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 241
BspMI ACCTGC 1 cut(s) 829
BspPI GGATC 3 cut(s) 20, 33, 1089
BspQI GCTCTTC 1 cut(s) 745
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 2 cut(s) 631, 812
BssAI RCCGGY 1 cut(s) 135
BssECI CCNNGG 3 cut(s) 514, 1009, 1062
BssMI GATC 4 cut(s) 25, 728, 868, 1081
BssNI GRCGYC 1 cut(s) 68
BssT1I CCWWGG 2 cut(s) 514, 1009
Bst4CI ACNGT 2 cut(s) 853, 928
Bst6I CTCTTC 1 cut(s) 745
BstACI GRCGYC 1 cut(s) 68
BstBAI YACGTR 2 cut(s) 147, 1129
BstC8I GCNNGC 5 cut(s) 6, 130, 836, 944, 1158
BstDEI CTNAG 5 cut(s) 205, 421, 529, 563, 714
BstF5I GGATG 2 cut(s) 954, 1072
BstKTI GATC 4 cut(s) 28, 731, 871, 1084
BstMAI GTCTC 2 cut(s) 108, 842
BstMBI GATC 4 cut(s) 25, 728, 868, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 183, 701, 898
BstSFI CTRYAG 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 894
BstSNI TACGTA 1 cut(s) 1129
BstV1I GCAGC 6 cut(s) 223, 280, 689, 913, 916, 1058
BstX2I RGATCY 3 cut(s) 25, 728, 1081
BstYI RGATCY 3 cut(s) 25, 728, 1081
BsuRI GGCC 2 cut(s) 946, 1014
BtsCI GGATG 2 cut(s) 954, 1072
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
BveI ACCTGC 1 cut(s) 829
Cac8I GCNNGC 5 cut(s) 6, 130, 836, 944, 1158
CaiI CAGNNNCTG 1 cut(s) 293
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 335
CviAII CATG 4 cut(s) 362, 735, 895, 959
DdeI CTNAG 5 cut(s) 205, 421, 529, 563, 714
DpnI GATC 4 cut(s) 27, 730, 870, 1083
DpnII GATC 4 cut(s) 25, 728, 868, 1081
EaeI YGGCCR 1 cut(s) 1012
Eam1104I CTCTTC 1 cut(s) 745
EarI CTCTTC 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 526
Eco105I TACGTA 1 cut(s) 1129
Eco130I CCWWGG 2 cut(s) 514, 1009
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 335
Eco53kI GAGCTC 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 1057
EcoT14I CCWWGG 2 cut(s) 514, 1009
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 514, 1009
Esp3I CGTCTC 1 cut(s) 108
FaeI CATG 4 cut(s) 365, 738, 898, 962
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FaqI GGGAC 1 cut(s) 753
FatI CATG 4 cut(s) 361, 734, 894, 958
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 7 cut(s) 133, 237, 294, 678, 902, 905, 1047
FokI GGATG 2 cut(s) 941, 1079
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 7 cut(s) 133, 237, 294, 678, 902, 905, 1047
FspBI CTAG 7 cut(s) 158, 515, 647, 744, 765, 887, 1149
GluI GCNGC 7 cut(s) 133, 237, 294, 678, 902, 905, 1047
GsaI CCCAGC 1 cut(s) 128
HaeIII GGCC 2 cut(s) 946, 1014
HapII CCGG 4 cut(s) 80, 107, 136, 187
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 365, 738, 898, 962
HindIII AAGCTT 1 cut(s) 971
HinfI GANTC 4 cut(s) 416, 782, 985, 1094
HpaII CCGG 4 cut(s) 80, 107, 136, 187
HphI GGTGA 1 cut(s) 393
Hpy166II GTNNAC 1 cut(s) 320
Hpy188I TCNGA 9 cut(s) 289, 415, 424, 532, 539, 566, 781, 990, 1066
Hpy188III TCNNGA 7 cut(s) 29, 384, 432, 669, 920, 1033, 1085
Hpy8I GTNNAC 1 cut(s) 320
Hpy99I CGWCG 2 cut(s) 70, 73
HpyAV CCTTC 1 cut(s) 717
HpyCH4III ACNGT 2 cut(s) 853, 928
HpyCH4IV ACGT 4 cut(s) 68, 146, 270, 1128
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 701, 898
HpyF3I CTNAG 5 cut(s) 205, 421, 529, 563, 714
HpySE526I ACGT 4 cut(s) 68, 146, 270, 1128
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 365, 738, 898, 962
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 4 cut(s) 25, 728, 868, 1081
LguI GCTCTTC 1 cut(s) 745
LmnI GCTCC 2 cut(s) 51, 898
Lsp1109I GCAGC 6 cut(s) 223, 280, 689, 913, 916, 1058
LweI GCATC 3 cut(s) 25, 173, 682
MaeI CTAG 7 cut(s) 158, 515, 647, 744, 765, 887, 1149
MaeII ACGT 4 cut(s) 68, 146, 270, 1128
MalI GATC 4 cut(s) 27, 730, 870, 1083
MboI GATC 4 cut(s) 25, 728, 868, 1081
MboII GAAGA 5 cut(s) 237, 240, 404, 723, 732
MflI RGATCY 3 cut(s) 25, 728, 1081
MhlI GDGCHC 2 cut(s) 528, 894
MluCI AATT 7 cut(s) 83, 96, 329, 775, 915, 1026, 1057
MlyI GAGTC 1 cut(s) 1103
MnlI CCTC 8 cut(s) 128, 430, 442, 665, 761, 787, 838, 1072
MseI TTAA 2 cut(s) 576, 635
MslI CAYNNNNRTG 2 cut(s) 147, 480
MspI CCGG 4 cut(s) 80, 107, 136, 187
Mva1269I GAATGC 1 cut(s) 1150
MwoI GCNNNNNNNGC 3 cut(s) 183, 701, 898
NdeII GATC 4 cut(s) 25, 728, 868, 1081
NlaIII CATG 4 cut(s) 365, 738, 898, 962
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 4 cut(s) 72, 138, 199, 381
PaeR7I CTCGAG 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 745
PctI GAATGC 1 cut(s) 1150
PfeI GAWTC 3 cut(s) 416, 782, 985
PflFI GACNNNGTC 1 cut(s) 70
PkrI GCNGC 7 cut(s) 134, 238, 295, 679, 903, 906, 1048
PleI GAGTC 1 cut(s) 1102
PpsI GAGTC 1 cut(s) 1102
Ppu21I YACGTR 2 cut(s) 147, 1129
Psp124BI GAGCTC 1 cut(s) 528
PspFI CCCAGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 335
PspXI VCTCGAGB 1 cut(s) 313
PstI CTGCAG 1 cut(s) 241
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 3 cut(s) 25, 728, 1081
PsyI GACNNNGTC 1 cut(s) 70
RseI CAYNNNNRTG 2 cut(s) 147, 480
SacI GAGCTC 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 745
SaqAI TTAA 2 cut(s) 576, 635
SatI GCNGC 7 cut(s) 133, 237, 294, 678, 902, 905, 1047
Sau3AI GATC 4 cut(s) 25, 728, 868, 1081
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 1 cut(s) 1103
SduI GDGCHC 2 cut(s) 528, 894
SfaNI GCATC 3 cut(s) 25, 173, 682
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 313
SinI GGWCC 1 cut(s) 335
SlaI CTCGAG 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 147, 480
SmlI CTYRAG 2 cut(s) 313, 908
SmoI CTYRAG 2 cut(s) 313, 908
SnaBI TACGTA 1 cut(s) 1129
Sse9I AATT 7 cut(s) 83, 96, 329, 775, 915, 1026, 1057
SsiI CCGC 2 cut(s) 115, 133
SspI AATATT 2 cut(s) 863, 875
SspMI CTAG 7 cut(s) 158, 515, 647, 744, 765, 887, 1149
SstI GAGCTC 1 cut(s) 528
StyI CCWWGG 2 cut(s) 514, 1009
TaaI ACNGT 2 cut(s) 853, 928
TaiI ACGT 4 cut(s) 71, 149, 273, 1131
TaqI TCGA 4 cut(s) 181, 314, 433, 798
TasI AATT 7 cut(s) 83, 96, 329, 775, 915, 1026, 1057
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 3 cut(s) 416, 782, 985
Tru1I TTAA 2 cut(s) 576, 635
Tru9I TTAA 2 cut(s) 576, 635
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 4 cut(s) 72, 138, 199, 381
TseI GCWGC 6 cut(s) 236, 293, 677, 901, 904, 1046
Tsp45I GTSAC 4 cut(s) 72, 138, 199, 381
TspDTI ATGAA 5 cut(s) 378, 405, 723, 1083, 1112
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 335
XapI RAATTY 4 cut(s) 83, 96, 915, 1057
XhoI CTCGAG 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 514
XspI CTAG 7 cut(s) 158, 515, 647, 744, 765, 887, 1149
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.