Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006261

Physical Location & Seq

Genomic Coordinates Reverse (-)

26316870 .. 26321700

Gene Structure 4831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G295900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGTTGGTTACCTGGCAGATAAGAAAATTTGCTCAAGTAGAAGTGTTGTTTTGGCATAGCTGCTGCATTTTTGTTGTTATGTCAGAAGCTACGAAGGATCTTGTTGGTTCGAGTGAACATGATAAAATAGGACCAGACTTCTTTGGTTACTATACACGTTTAGTTACAGAGTTGTTATCACAAGAAGAAGATTTTCCACCTTTTGCTTCCCAATCCTCTGATCTATCTCAAAGAAGAAGTGGGGATGTTAGAGGGAAGGATGTTATTGAGCACAGTTATGGTACTTCTGGTTCTTTATTTGGTAACAGCATAGGAACTGGGCTTTCAGATTTCAAAAAGGAAAGATTGAAATCATTGCTCAGGCAGGGTGTGAATTTTCTTTCACCAGAAGTTGATGAGATGCTAGAACCTGTTGTTGCTATCAGCCGGTTAAAATCTCAGCTAAAGAGCAGAAACTGTCTATCGTCTTCTAAAGGTACATTACCTGACATTGATGCAAGGAGTGCTCACTCTAAGAGACCAAAGAGATCTTCTTCTTTCTCTTCAACCAGTCTCCCTGCACTTTCCACTCCTACCAATCTCGAGTCTAGCAAAGAGAACTGTGCTCATGGCCTCACAACAGAAACAGCTAGGTTGATAGCTGTTCCGGAGGAGCCAAAGGTTGACGATGATTTGCAGTTCCTTATAGAGAAGGATAGCTTGCAGGTTGAGGAGACAGTGAAGAAATATTCTGATGAATTTTCTGCAACACTAGGGCACATGGAACAGCAGCTTGAAAAACTTCTTGATACTGTGATGGCTTCGTGCAGGCCTATGACCCTTCCTGAGAAACACAAGCTTGGAAAATTGATTCAGAAGTTACCACCAAAAAATCTTGACTGTGTTGCAGAAATGCTCCAACATAGGAACGCAGCTTGTATAAATTCCTCTGATGAAATTCATGTGGATCTTGAAAAACAGAGTAATGTAACACTTTGGAGATTGTATTATTATGTTGAAGCTGTTGAGAAAGCTAGAAAGCTAGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET GATA

Protein Analysis

344

Amino Acids

38.51

Weight (kDa)

6.18

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600
fragaria_vesca	FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060
malus_domestica	MD09G1020300.v1.1
prunus_persica	Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1
pyrus_communis	pycom111g01700 pycom17g01750
rosa_chinensis	RchiOBHm_Chr2g0173581
rosa_laevigata	RLG00000022204
rosa_multiflora	Rmu_sc0002538.1_g000021
rosa_roxburghii	Rroxscaffold_2G00078760
rosa_rugosa	Rorug02G0571500 Rorug02G0571500
rosa_samantha	Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100
rosa_wichuraiana	Rw2G053380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	694
AccIII	TCCGGA	1 cut(s)	646
AclWI	GGATC	2 cut(s)	105, 954
AcsI	RAATTY	5 cut(s)	26, 373, 737, 922, 936
AfaI	GTAC	2 cut(s)	283, 478
AflIII	ACRYGT	1 cut(s)	155
AgsI	TTSAA	6 cut(s)	334, 349, 546, 776, 953, 998
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
Alw21I	GWGCWC	3 cut(s)	273, 508, 607
Alw26I	GTCTC	3 cut(s)	511, 557, 707
AlwI	GGATC	2 cut(s)	105, 954
AlwNI	CAGNNNCTG	1 cut(s)	456
Ama87I	CYCGRG	1 cut(s)	581
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	2 cut(s)	610, 809
ApeKI	GCWGC	4 cut(s)	60, 63, 769, 911
ApoI	RAATTY	5 cut(s)	26, 373, 737, 922, 936
Asp700I	GAANNNNTTC	2 cut(s)	192, 780
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	1 cut(s)	375
AsuNHI	GCTAGC	1 cut(s)	1021
AvaI	CYCGRG	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	759
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	3 cut(s)	273, 508, 607
BbvI	GCAGC	4 cut(s)	47, 50, 781, 923
BccI	CCATC	1 cut(s)	790
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	3 cut(s)	511, 557, 707
BfaI	CTAG	6 cut(s)	404, 588, 630, 752, 1014, 1022
BfuAI	ACCTGC	1 cut(s)	694
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	4 cut(s)	61, 64, 770, 912
BlsI	GCNGC	4 cut(s)	62, 65, 771, 913
Bme1390I	CCNGG	1 cut(s)	13
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	581
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	654
BmrFI	CCNGG	1 cut(s)	13
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	390, 484
BmtI	GCTAGC	1 cut(s)	1025
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	511
BsaWI	WCCGGW	1 cut(s)	646
Bse118I	RCCGGY	1 cut(s)	426
Bse1I	ACTGG	2 cut(s)	322, 549
Bse3DI	GCAATG	1 cut(s)	353
Bse8I	GATNNNNATC	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	1 cut(s)	13
BseGI	GGATG	2 cut(s)	250, 265
BseJI	GATNNNNATC	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	3 cut(s)	373, 452, 816
BseNI	ACTGG	2 cut(s)	322, 549
BseRI	GAGGAG	2 cut(s)	665, 725
BseSI	GKGCMC	1 cut(s)	759
BseXI	GCAGC	4 cut(s)	47, 50, 781, 923
BsgI	GTGCAG	2 cut(s)	543, 826
BshFI	GGCC	2 cut(s)	612, 811
BsiHKAI	GWGCWC	3 cut(s)	273, 508, 607
BsiHKCI	CYCGRG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	427, 647
BsmAI	GTCTC	3 cut(s)	511, 557, 707
BsnI	GGCC	2 cut(s)	612, 811
Bso31I	GGTCTC	1 cut(s)	511
BsoBI	CYCGRG	1 cut(s)	581
Bsp1286I	GDGCHC	4 cut(s)	273, 508, 607, 759
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	4 cut(s)	97, 220, 527, 946
BspANI	GGCC	2 cut(s)	612, 811
BspCNI	CTCAG	3 cut(s)	372, 451, 817
BspEI	TCCGGA	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	694
BspOI	GCTAGC	1 cut(s)	1025
BspPI	GGATC	2 cut(s)	105, 954
BspTNI	GGTCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	322, 549
BssAI	RCCGGY	1 cut(s)	426
BssMI	GATC	4 cut(s)	97, 220, 527, 946
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	6 cut(s)	275, 458, 602, 718, 793, 881
Bst6I	CTCTTC	1 cut(s)	547
BstAPI	GCANNNNNTGC	1 cut(s)	503
BstC8I	GCNNGC	3 cut(s)	701, 809, 1023
BstDEI	CTNAG	4 cut(s)	359, 438, 513, 825
BstEII	GGTNACC	1 cut(s)	7
BstF5I	GGATG	2 cut(s)	250, 265
BstKTI	GATC	4 cut(s)	100, 223, 530, 949
BstMAI	GTCTC	3 cut(s)	511, 557, 707
BstMBI	GATC	4 cut(s)	97, 220, 527, 946
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	759
BstV1I	GCAGC	4 cut(s)	47, 50, 781, 923
BstV2I	GAAGAC	1 cut(s)	459
BstX2I	RGATCY	3 cut(s)	97, 527, 946
BstYI	RGATCY	3 cut(s)	97, 527, 946
BsuRI	GGCC	2 cut(s)	612, 811
BtsCI	GGATG	2 cut(s)	250, 265
BtsIMutI	CAGTG	1 cut(s)	723
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	3 cut(s)	701, 809, 1023
CaiI	CAGNNNCTG	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	282, 477
CviAII	CATG	4 cut(s)	119, 608, 760, 941
CviQI	GTAC	2 cut(s)	282, 477
DdeI	CTNAG	4 cut(s)	359, 438, 513, 825
DpnI	GATC	4 cut(s)	99, 222, 529, 948
DpnII	GATC	4 cut(s)	97, 220, 527, 946
Eam1104I	CTCTTC	1 cut(s)	547
EarI	CTCTTC	1 cut(s)	547
Eco147I	AGGCCT	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	511
Eco47I	GGWCC	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	581
Eco91I	GGTNACC	1 cut(s)	7
EcoO65I	GGTNACC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	11
FaeI	CATG	4 cut(s)	122, 611, 763, 944
FalI	AAGNNNNNCTT	2 cut(s)	683, 715
FatI	CATG	4 cut(s)	118, 607, 759, 940
Fnu4HI	GCNGC	4 cut(s)	61, 64, 770, 912
FokI	GGATG	2 cut(s)	257, 272
Fsp4HI	GCNGC	4 cut(s)	61, 64, 770, 912
FspBI	CTAG	6 cut(s)	404, 588, 630, 752, 1014, 1022
GluI	GCNGC	4 cut(s)	61, 64, 770, 912
HaeIII	GGCC	2 cut(s)	612, 811
HapII	CCGG	2 cut(s)	427, 647
Hin1II	CATG	4 cut(s)	122, 611, 763, 944
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HindIII	AAGCTT	1 cut(s)	836
HinfI	GANTC	2 cut(s)	584, 850
HpaII	CCGG	2 cut(s)	427, 647
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	116, 664
Hpy188I	TCNGA	6 cut(s)	85, 220, 328, 733, 855, 931
Hpy188III	TCNNGA	6 cut(s)	581, 647, 785, 824, 875, 950
Hpy8I	GTNNAC	2 cut(s)	116, 664
HpyAV	CCTTC	4 cut(s)	88, 250, 685, 830
HpyCH4III	ACNGT	6 cut(s)	275, 458, 602, 718, 793, 881
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	8 cut(s)	66, 497, 560, 676, 703, 746, 807, 887
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	4 cut(s)	359, 438, 513, 825
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	4 cut(s)	122, 611, 763, 944
Kpn2I	TCCGGA	1 cut(s)	646
Kzo9I	GATC	4 cut(s)	97, 220, 527, 946
LmnI	GCTCC	2 cut(s)	652, 900
Lsp1109I	GCAGC	4 cut(s)	47, 50, 781, 923
LweI	GCATC	2 cut(s)	390, 484
MaeI	CTAG	6 cut(s)	404, 588, 630, 752, 1014, 1022
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	6 cut(s)	7, 146, 163, 302, 858, 967
MalI	GATC	4 cut(s)	99, 222, 529, 948
MboI	GATC	4 cut(s)	97, 220, 527, 946
MboII	GAAGA	8 cut(s)	197, 200, 246, 459, 522, 525, 534, 733
MflI	RGATCY	3 cut(s)	97, 527, 946
MhlI	GDGCHC	4 cut(s)	273, 508, 607, 759
MluCI	AATT	6 cut(s)	26, 373, 737, 845, 922, 936
MlyI	GAGTC	1 cut(s)	593
MmeI	TCCRAC	1 cut(s)	922
MnlI	CCTC	6 cut(s)	226, 245, 623, 643, 703, 937
MroI	TCCGGA	1 cut(s)	646
MroXI	GAANNNNTTC	2 cut(s)	192, 780
MseI	TTAA	1 cut(s)	431
MslI	CAYNNNNRTG	1 cut(s)	276
MspI	CCGG	2 cut(s)	427, 647
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	503
NdeII	GATC	4 cut(s)	97, 220, 527, 946
NheI	GCTAGC	1 cut(s)	1021
NlaIII	CATG	4 cut(s)	122, 611, 763, 944
NlaIV	GGNNCC	1 cut(s)	654
PaeR7I	CTCGAG	1 cut(s)	581
PceI	AGGCCT	1 cut(s)	811
PdmI	GAANNNNTTC	2 cut(s)	192, 780
PfeI	GAWTC	1 cut(s)	850
PkrI	GCNGC	4 cut(s)	62, 65, 771, 913
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Psp6I	CCWGG	1 cut(s)	11
PspEI	GGTNACC	1 cut(s)	7
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	131
PsrI	GAACNNNNNNTAC	2 cut(s)	274, 306
PstNI	CAGNNNCTG	1 cut(s)	456
PsuI	RGATCY	3 cut(s)	97, 527, 946
RsaI	GTAC	2 cut(s)	283, 478
RsaNI	GTAC	2 cut(s)	282, 477
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	4 cut(s)	61, 64, 770, 912
Sau3AI	GATC	4 cut(s)	97, 220, 527, 946
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	1 cut(s)	593
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	4 cut(s)	273, 508, 607, 759
SfaNI	GCATC	2 cut(s)	390, 484
Sfr274I	CTCGAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	581
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	33, 581
SmoI	CTYRAG	2 cut(s)	33, 581
Sse9I	AATT	6 cut(s)	26, 373, 737, 845, 922, 936
SseBI	AGGCCT	1 cut(s)	811
SspI	AATATT	1 cut(s)	728
SspMI	CTAG	6 cut(s)	404, 588, 630, 752, 1014, 1022
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	6 cut(s)	275, 458, 602, 718, 793, 881
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	2 cut(s)	110, 582
TasI	AATT	6 cut(s)	26, 373, 737, 845, 922, 936
TfiI	GAWTC	1 cut(s)	850
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	723
TseI	GCWGC	4 cut(s)	60, 63, 769, 911
TspDTI	ATGAA	3 cut(s)	750, 929, 948
TspRI	CASTG	1 cut(s)	723
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	5 cut(s)	26, 373, 737, 922, 936
XhoI	CTCGAG	1 cut(s)	581
XmnI	GAANNNNTTC	2 cut(s)	192, 780
XspI	CTAG	6 cut(s)	404, 588, 630, 752, 1014, 1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.