Bromodomain extra-terminal - transcription regulation
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600 |
| fragaria_vesca | FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 |
| malus_domestica | MD09G1020300.v1.1 |
| prunus_persica | Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1 |
| pyrus_communis | pycom111g01700 pycom17g01750 |
| rosa_chinensis | RchiOBHm_Chr2g0173581 |
| rosa_laevigata | RLG00000022204 |
| rosa_multiflora | Rmu_sc0002538.1_g000021 |
| rosa_roxburghii | Rroxscaffold_2G00078760 |
| rosa_rugosa | Rorug02G0571500 Rorug02G0571500 |
| rosa_samantha | Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100 |
| rosa_wichuraiana | Rw2G053380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 1 cut(s) | 307 |
| AluBI | AGCT | 3 cut(s) | 18, 47, 280 |
| AluI | AGCT | 3 cut(s) | 18, 47, 280 |
| Alw21I | GWGCWC | 1 cut(s) | 282 |
| Alw26I | GTCTC | 1 cut(s) | 249 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| ApeKI | GCWGC | 1 cut(s) | 47 |
| AspA2I | CCTAGG | 1 cut(s) | 268 |
| AspS9I | GGNCC | 1 cut(s) | 89 |
| AsuHPI | GGTGA | 1 cut(s) | 147 |
| AvaII | GGWCC | 1 cut(s) | 89 |
| AvrII | CCTAGG | 1 cut(s) | 268 |
| BanII | GRGCYC | 1 cut(s) | 282 |
| Bbv12I | GWGCWC | 1 cut(s) | 282 |
| BbvI | GCAGC | 1 cut(s) | 34 |
| BcoDI | GTCTC | 1 cut(s) | 249 |
| BfaI | CTAG | 1 cut(s) | 269 |
| BisI | GCNGC | 1 cut(s) | 48 |
| BlnI | CCTAGG | 1 cut(s) | 268 |
| BlsI | GCNGC | 1 cut(s) | 49 |
| Bme18I | GGWCC | 1 cut(s) | 89 |
| BmgT120I | GGNCC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 1 cut(s) | 268 |
| BseDI | CCNNGG | 1 cut(s) | 268 |
| BseMII | CTCAG | 2 cut(s) | 189, 297 |
| BseXI | GCAGC | 1 cut(s) | 34 |
| BsiHKAI | GWGCWC | 1 cut(s) | 282 |
| BsmAI | GTCTC | 1 cut(s) | 249 |
| Bsp1286I | GDGCHC | 1 cut(s) | 282 |
| BspCNI | CTCAG | 2 cut(s) | 188, 296 |
| BssECI | CCNNGG | 1 cut(s) | 268 |
| BssT1I | CCWWGG | 1 cut(s) | 268 |
| BstDEI | CTNAG | 3 cut(s) | 175, 283, 317 |
| BstMAI | GTCTC | 1 cut(s) | 249 |
| BstV1I | GCAGC | 1 cut(s) | 34 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| Cfr13I | GGNCC | 1 cut(s) | 89 |
| CviAII | CATG | 1 cut(s) | 116 |
| CviJI | RGCY | 4 cut(s) | 18, 47, 267, 280 |
| CviKI_1 | RGCY | 4 cut(s) | 18, 47, 267, 280 |
| DdeI | CTNAG | 3 cut(s) | 175, 283, 317 |
| Ecl136II | GAGCTC | 1 cut(s) | 280 |
| Eco130I | CCWWGG | 1 cut(s) | 268 |
| Eco24I | GRGCYC | 1 cut(s) | 282 |
| Eco47I | GGWCC | 1 cut(s) | 89 |
| Eco53kI | GAGCTC | 1 cut(s) | 280 |
| EcoICRI | GAGCTC | 1 cut(s) | 280 |
| EcoT14I | CCWWGG | 1 cut(s) | 268 |
| EcoT38I | GRGCYC | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 268 |
| FaeI | CATG | 1 cut(s) | 119 |
| FaiI | YATR | 8 cut(s) | 15, 38, 111, 117, 182, 198, 231, 276 |
| FatI | CATG | 1 cut(s) | 115 |
| Fnu4HI | GCNGC | 1 cut(s) | 48 |
| FriOI | GRGCYC | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 1 cut(s) | 48 |
| FspBI | CTAG | 1 cut(s) | 269 |
| GluI | GCNGC | 1 cut(s) | 48 |
| Hin1II | CATG | 1 cut(s) | 119 |
| HinfI | GANTC | 1 cut(s) | 170 |
| HphI | GGTGA | 1 cut(s) | 147 |
| Hpy166II | GTNNAC | 1 cut(s) | 74 |
| Hpy188I | TCNGA | 6 cut(s) | 43, 169, 178, 286, 293, 320 |
| Hpy188III | TCNNGA | 2 cut(s) | 138, 186 |
| Hpy8I | GTNNAC | 1 cut(s) | 74 |
| HpyCH4IV | ACGT | 1 cut(s) | 24 |
| HpyCH4V | TGCA | 1 cut(s) | 50 |
| HpyF3I | CTNAG | 3 cut(s) | 175, 283, 317 |
| HpySE526I | ACGT | 1 cut(s) | 24 |
| Hsp92II | CATG | 1 cut(s) | 119 |
| LpnPI | CCDG | 1 cut(s) | 105 |
| Lsp1109I | GCAGC | 1 cut(s) | 34 |
| MaeI | CTAG | 1 cut(s) | 269 |
| MaeII | ACGT | 1 cut(s) | 24 |
| MaeIII | GTNAC | 4 cut(s) | 20, 104, 135, 260 |
| MboII | GAAGA | 1 cut(s) | 158 |
| MhlI | GDGCHC | 1 cut(s) | 282 |
| MluCI | AATT | 1 cut(s) | 83 |
| MnlI | CCTC | 2 cut(s) | 184, 196 |
| MslI | CAYNNNNRTG | 1 cut(s) | 234 |
| NlaIII | CATG | 1 cut(s) | 119 |
| NmuCI | GTSAC | 1 cut(s) | 135 |
| PfeI | GAWTC | 1 cut(s) | 170 |
| PkrI | GCNGC | 1 cut(s) | 49 |
| Psp124BI | GAGCTC | 1 cut(s) | 282 |
| PspPI | GGNCC | 1 cut(s) | 89 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| RseI | CAYNNNNRTG | 1 cut(s) | 234 |
| SacI | GAGCTC | 1 cut(s) | 282 |
| SatI | GCNGC | 1 cut(s) | 48 |
| Sau96I | GGNCC | 1 cut(s) | 89 |
| SduI | GDGCHC | 1 cut(s) | 282 |
| SetI | ASST | 6 cut(s) | 20, 27, 49, 160, 207, 282 |
| SgeI | CNNG | 8 cut(s) | 81, 104, 128, 150, 198, 226, 258, 281 |
| SinI | GGWCC | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 234 |
| Sse9I | AATT | 1 cut(s) | 83 |
| SspMI | CTAG | 1 cut(s) | 269 |
| SstI | GAGCTC | 1 cut(s) | 282 |
| StyI | CCWWGG | 1 cut(s) | 268 |
| TaiI | ACGT | 1 cut(s) | 27 |
| TaqI | TCGA | 2 cut(s) | 68, 187 |
| TasI | AATT | 1 cut(s) | 83 |
| TfiI | GAWTC | 1 cut(s) | 170 |
| TseFI | GTSAC | 1 cut(s) | 135 |
| TseI | GCWGC | 1 cut(s) | 47 |
| Tsp45I | GTSAC | 1 cut(s) | 135 |
| TspDTI | ATGAA | 3 cut(s) | 132, 159, 240 |
| VpaK11BI | GGWCC | 1 cut(s) | 89 |
| XmaJI | CCTAGG | 1 cut(s) | 268 |
| XspI | CTAG | 1 cut(s) | 269 |