Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002538.1

Orthogroup ID

OG0006261

Physical Location & Seq

Genomic Coordinates Forward (+)

79146 .. 82906

Gene Structure 3761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002538.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ctgccggaatttctctttcaaattccgtctccggctgaccgcctcgccccagctcgccgccggtcacacacgtatgagttgctagggttcttgcatttgagctttcgatgccggaaaaggtgtgtgaccttagtggttacttggcagagaagaagatttgctgcagtagaagtgttgttctggcatagctgttacgtttgtgttgttatgtcagaagctgcaaaagatttggttggttcgagtaaacgccaaaaattaggaccagactactttggttactatacacatgaagtggtagagttgttgtcacaaaatgaagatgtttcacctttttcttccgaatcctcagatatatctcgaagcagatatgtggaggttaggggcaaggataggattgagcatagtaatggtgtgtatggttcgttgtttagtaacagcctagggaatgagctctcagatttcagaaaagaaagattgaagttgttgctcagacagggtgttaaagttcttgcaccagaagttgatgagatgatagaacctgttgtagctatgagccagttaaaatcacagctagagagcagaaagtgtttatcaagaggtgcagcaagtgatgttgatgcagggaaagcaccttctcctaagaaactaaagagatcttcatgctcttctagtagcctctctgcactttctagtcccaccaattccgaatcaaacagagaggtcgatgatgactggcagttccttatagagaacaacagcttgcaggttgaggagacagtaaaaaaatattgtgatcaatattatgcaaaactagggcacatggagcagcagcttgagaaaattcttgatactgtgatgtccaagtgcaggccaatgaccatccatgagaagcacaagcttggaaaacagattcagaagttaccaccagaaaaccttggccgtgttatggaaattatccagaatagcaacgcagcttatacgaattcctcggatgaagtttcggtggatcttgaaaaggagtctaatgttaccctttggagattgtttcattacgtagaagcagttgagaatgctagaaagctcgcaagtagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET GATA

Protein Analysis

364

Amino Acids

41.42

Weight (kDa)

8.33

Isoelectric Point (pI)

56.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600
fragaria_vesca	FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060
malus_domestica	MD09G1020300.v1.1
prunus_persica	Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1
pyrus_communis	pycom111g01700 pycom17g01750
rosa_chinensis	RchiOBHm_Chr2g0173581
rosa_laevigata	RLG00000022204
rosa_multiflora	Rmu_sc0002538.1_g000021
rosa_roxburghii	Rroxscaffold_2G00078760
rosa_rugosa	Rorug02G0571500 Rorug02G0571500
rosa_samantha	Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100
rosa_wichuraiana	Rw2G053380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	754
AciI	CCGC	2 cut(s)	40, 58
AclWI	GGATC	1 cut(s)	1014
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	4 cut(s)	8, 21, 840, 982
AfiI	CCNNNNNNNGG	2 cut(s)	867, 946
AflIII	ACRYGT	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	20, 478, 1013
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	33, 767
AlwI	GGATC	1 cut(s)	1014
AlwNI	CAGNNNCTG	1 cut(s)	218
AoxI	GGCC	2 cut(s)	869, 937
ApeKI	GCWGC	6 cut(s)	161, 218, 602, 826, 829, 971
ApoI	RAATTY	4 cut(s)	8, 21, 840, 982
AspA2I	CCTAGG	1 cut(s)	439
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	1 cut(s)	318
AvaII	GGWCC	1 cut(s)	260
AvrII	CCTAGG	1 cut(s)	439
BaeGI	GKGCMC	1 cut(s)	819
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	6 cut(s)	148, 205, 614, 838, 841, 983
BccI	CCATC	1 cut(s)	887
BceAI	ACGGC	1 cut(s)	924
BclI	TGATCA	1 cut(s)	793
BcoDI	GTCTC	2 cut(s)	33, 767
BfaI	CTAG	7 cut(s)	83, 440, 572, 669, 690, 812, 1074
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	754
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	7 cut(s)	58, 162, 219, 603, 827, 830, 972
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	7 cut(s)	59, 163, 220, 604, 828, 831, 973
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmsI	GCATC	2 cut(s)	98, 607
BpuEI	CTTGAG	1 cut(s)	854
BsaAI	YACGTR	2 cut(s)	72, 1054
BsaJI	CCNNGG	3 cut(s)	439, 934, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	867, 946
Bse118I	RCCGGY	1 cut(s)	60
Bse1I	ACTGG	2 cut(s)	556, 737
BseDI	CCNNGG	3 cut(s)	439, 934, 987
BseGI	GGATG	2 cut(s)	879, 997
BseLI	CCNNNNNNNGG	2 cut(s)	867, 946
BseMII	CTCAG	3 cut(s)	360, 468, 502
BseNI	ACTGG	2 cut(s)	556, 737
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	1 cut(s)	819
BseXI	GCAGC	6 cut(s)	148, 205, 614, 838, 841, 983
BseYI	CCCAGC	1 cut(s)	49
BsgI	GTGCAG	3 cut(s)	621, 666, 886
BshFI	GGCC	2 cut(s)	871, 939
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	4 cut(s)	5, 32, 61, 112
BslFI	GGGAC	1 cut(s)	678
BslI	CCNNNNNNNGG	2 cut(s)	867, 946
BsmAI	GTCTC	2 cut(s)	33, 767
BsmBI	CGTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	678
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	2 cut(s)	871, 939
Bsp1286I	GDGCHC	2 cut(s)	453, 819
Bsp143I	GATC	3 cut(s)	653, 793, 1006
BspACI	CCGC	2 cut(s)	40, 58
BspANI	GGCC	2 cut(s)	871, 939
BspCNI	CTCAG	3 cut(s)	359, 467, 501
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	754
BspPI	GGATC	1 cut(s)	1014
BspQI	GCTCTTC	1 cut(s)	670
BsrFI	RCCGGY	1 cut(s)	60
BsrI	ACTGG	2 cut(s)	556, 737
BssAI	RCCGGY	1 cut(s)	60
BssECI	CCNNGG	3 cut(s)	439, 934, 987
BssMI	GATC	3 cut(s)	653, 793, 1006
BssT1I	CCWWGG	2 cut(s)	439, 934
Bst4CI	ACNGT	2 cut(s)	778, 853
Bst6I	CTCTTC	1 cut(s)	670
BstBAI	YACGTR	2 cut(s)	72, 1054
BstC8I	GCNNGC	4 cut(s)	55, 761, 869, 1083
BstDEI	CTNAG	5 cut(s)	130, 346, 454, 488, 639
BstF5I	GGATG	2 cut(s)	879, 997
BstKTI	GATC	3 cut(s)	656, 796, 1009
BstMAI	GTCTC	2 cut(s)	33, 767
BstMBI	GATC	3 cut(s)	653, 793, 1006
BstMWI	GCNNNNNNNGC	3 cut(s)	108, 626, 823
BstSFI	CTRYAG	1 cut(s)	162
BstSLI	GKGCMC	1 cut(s)	819
BstSNI	TACGTA	1 cut(s)	1054
BstV1I	GCAGC	6 cut(s)	148, 205, 614, 838, 841, 983
BstX2I	RGATCY	2 cut(s)	653, 1006
BstYI	RGATCY	2 cut(s)	653, 1006
BsuRI	GGCC	2 cut(s)	871, 939
BtsCI	GGATG	2 cut(s)	879, 997
BveI	ACCTGC	1 cut(s)	754
Cac8I	GCNNGC	4 cut(s)	55, 761, 869, 1083
CaiI	CAGNNNCTG	1 cut(s)	218
Cfr10I	RCCGGY	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	260
CviAII	CATG	4 cut(s)	287, 660, 820, 884
DdeI	CTNAG	5 cut(s)	130, 346, 454, 488, 639
DpnI	GATC	3 cut(s)	655, 795, 1008
DpnII	GATC	3 cut(s)	653, 793, 1006
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	670
EarI	CTCTTC	1 cut(s)	670
Ecl136II	GAGCTC	1 cut(s)	451
Eco105I	TACGTA	1 cut(s)	1054
Eco130I	CCWWGG	2 cut(s)	439, 934
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	451
EcoICRI	GAGCTC	1 cut(s)	451
EcoRI	GAATTC	1 cut(s)	982
EcoT14I	CCWWGG	2 cut(s)	439, 934
EcoT38I	GRGCYC	1 cut(s)	453
ErhI	CCWWGG	2 cut(s)	439, 934
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	4 cut(s)	290, 663, 823, 887
FaqI	GGGAC	1 cut(s)	678
FatI	CATG	4 cut(s)	286, 659, 819, 883
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	7 cut(s)	58, 162, 219, 603, 827, 830, 972
FokI	GGATG	2 cut(s)	866, 1004
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	7 cut(s)	58, 162, 219, 603, 827, 830, 972
FspBI	CTAG	7 cut(s)	83, 440, 572, 669, 690, 812, 1074
GluI	GCNGC	7 cut(s)	58, 162, 219, 603, 827, 830, 972
GsaI	CCCAGC	1 cut(s)	53
HaeIII	GGCC	2 cut(s)	871, 939
HapII	CCGG	4 cut(s)	5, 32, 61, 112
Hin1II	CATG	4 cut(s)	290, 663, 823, 887
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	4 cut(s)	341, 707, 910, 1019
HpaII	CCGG	4 cut(s)	5, 32, 61, 112
HphI	GGTGA	1 cut(s)	318
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	9 cut(s)	214, 340, 349, 457, 464, 491, 706, 915, 991
Hpy188III	TCNNGA	5 cut(s)	357, 594, 845, 958, 1010
Hpy8I	GTNNAC	1 cut(s)	245
HpyAV	CCTTC	1 cut(s)	642
HpyCH4III	ACNGT	2 cut(s)	778, 853
HpyCH4IV	ACGT	3 cut(s)	71, 195, 1053
HpyF10VI	GCNNNNNNNGC	3 cut(s)	108, 626, 823
HpyF3I	CTNAG	5 cut(s)	130, 346, 454, 488, 639
HpySE526I	ACGT	3 cut(s)	71, 195, 1053
Hsp92II	CATG	4 cut(s)	290, 663, 823, 887
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	3 cut(s)	653, 793, 1006
LguI	GCTCTTC	1 cut(s)	670
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	6 cut(s)	148, 205, 614, 838, 841, 983
LweI	GCATC	2 cut(s)	98, 607
MaeI	CTAG	7 cut(s)	83, 440, 572, 669, 690, 812, 1074
MaeII	ACGT	3 cut(s)	71, 195, 1053
MaeIII	GTNAC	9 cut(s)	63, 124, 136, 191, 275, 306, 431, 918, 1027
MalI	GATC	3 cut(s)	655, 795, 1008
MboI	GATC	3 cut(s)	653, 793, 1006
MboII	GAAGA	6 cut(s)	162, 165, 327, 329, 648, 657
MflI	RGATCY	2 cut(s)	653, 1006
MhlI	GDGCHC	2 cut(s)	453, 819
MluCI	AATT	7 cut(s)	8, 21, 254, 700, 840, 951, 982
MlyI	GAGTC	1 cut(s)	1028
MnlI	CCTC	8 cut(s)	53, 355, 367, 590, 686, 712, 763, 997
MseI	TTAA	2 cut(s)	501, 560
MslI	CAYNNNNRTG	2 cut(s)	72, 405
MspI	CCGG	4 cut(s)	5, 32, 61, 112
Mva1269I	GAATGC	1 cut(s)	1075
MwoI	GCNNNNNNNGC	3 cut(s)	108, 626, 823
NdeII	GATC	3 cut(s)	653, 793, 1006
NlaIII	CATG	4 cut(s)	290, 663, 823, 887
NmuCI	GTSAC	3 cut(s)	63, 124, 306
PciSI	GCTCTTC	1 cut(s)	670
PctI	GAATGC	1 cut(s)	1075
PfeI	GAWTC	3 cut(s)	341, 707, 910
PkrI	GCNGC	7 cut(s)	59, 163, 220, 604, 828, 831, 973
PleI	GAGTC	1 cut(s)	1027
PpsI	GAGTC	1 cut(s)	1027
Ppu21I	YACGTR	2 cut(s)	72, 1054
Psp124BI	GAGCTC	1 cut(s)	453
PspFI	CCCAGC	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	166
PstNI	CAGNNNCTG	1 cut(s)	218
PsuI	RGATCY	2 cut(s)	653, 1006
RseI	CAYNNNNRTG	2 cut(s)	72, 405
SacI	GAGCTC	1 cut(s)	453
SapI	GCTCTTC	1 cut(s)	670
SaqAI	TTAA	2 cut(s)	501, 560
SatI	GCNGC	7 cut(s)	58, 162, 219, 603, 827, 830, 972
Sau3AI	GATC	3 cut(s)	653, 793, 1006
Sau96I	GGNCC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	1028
SduI	GDGCHC	2 cut(s)	453, 819
SfaNI	GCATC	2 cut(s)	98, 607
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	72, 405
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
SnaBI	TACGTA	1 cut(s)	1054
Sse9I	AATT	7 cut(s)	8, 21, 254, 700, 840, 951, 982
SsiI	CCGC	2 cut(s)	40, 58
SspI	AATATT	2 cut(s)	788, 800
SspMI	CTAG	7 cut(s)	83, 440, 572, 669, 690, 812, 1074
SstI	GAGCTC	1 cut(s)	453
StyI	CCWWGG	2 cut(s)	439, 934
TaaI	ACNGT	2 cut(s)	778, 853
TaiI	ACGT	3 cut(s)	74, 198, 1056
TaqI	TCGA	4 cut(s)	106, 239, 358, 723
TasI	AATT	7 cut(s)	8, 21, 254, 700, 840, 951, 982
TauI	GCSGC	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	341, 707, 910
Tru1I	TTAA	2 cut(s)	501, 560
Tru9I	TTAA	2 cut(s)	501, 560
TseFI	GTSAC	3 cut(s)	63, 124, 306
TseI	GCWGC	6 cut(s)	161, 218, 602, 826, 829, 971
Tsp45I	GTSAC	3 cut(s)	63, 124, 306
TspDTI	ATGAA	5 cut(s)	303, 330, 648, 1008, 1037
TspGWI	ACGGA	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	260
XapI	RAATTY	4 cut(s)	8, 21, 840, 982
XmaJI	CCTAGG	1 cut(s)	439
XspI	CTAG	7 cut(s)	83, 440, 572, 669, 690, 812, 1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.