Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006261

Physical Location & Seq

Genomic Coordinates Reverse (-)

38460460 .. 38465382

Gene Structure 4923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52060.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTCACAAGCTGCTGAAGATGTGGATGGTTTGAGTAAACGCCGAAAATTGGGGCCAGACTACTTTGGGTACTATACACATGAAGTGGTAGAGTTGTTGTCACGAAATGAAGATGCTTCACCTTTTGCTTCCAAATCCTCAGACGTATCTCAAAGCAGACGTGTGGAGGTCATAGGCGAGGACAGGATTGAGAATGGTGATGGTGTGTCTGGTTCGTTGTTTAGTAACAGCCTAGGGAATGAGCTCTCAGAATTCACAAAAGAAAGATTGGAGTTGTTGCTCAGGCAGGGAGTCAAAGTTCTTGCACCAGAAGTTGATGAGATGATAGAACCTGTTGTAGGTATGAGCCGGTTAAAATCACGGCTAGAGAGCAGAAAGTGTTTATCAAGAGGTGCATCATCTTCATGCTCTTCAAGCAAAGAGGTCGATGATGAATGGCAGTCCCTTATACAGAGCAACAGCTTGCAGGTTGAGGAGGCAGTAAAAAAATATTCTGATCAATATTATTCAGAACTAGGGCACATGGAGCAGCAGCTTGAGAAAATTCTTGATACTGTGATGTCCAAGTGCAGGCCAATGACCATTCATGAGAAGCACAAGCTTGGAAACCTGATTCAGAAGTTACCACCAGAAAATCTTGATCGTGTTATGGAAATTATCCAAAATAGCAATCCAGCTCATACGAGTTCCTCAGATGAAGTTCACGTGGATCTTGAAAAGGAGTCAAACGTAACACTTTGGAGATTGTTTAATTACGTAAAAGCAGTTGAGAAAGCTAGAAAAGCAGTTGAGAATGCTGAAGAGCTCGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET

Protein Analysis

272

Amino Acids

30.58

Weight (kDa)

5.2

Isoelectric Point (pI)

54.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006261)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27420 AT5G40600 AT5G40600 AT5G40600 AT5G40600
fragaria_vesca	FvH4_6g52060 FvH4_6g52060 FvH4_6g52060 FvH4_6g52060
malus_domestica	MD09G1020300.v1.1
prunus_persica	Prupe.3G207500_v2.0.a1 Prupe.3G295900_v2.0.a1
pyrus_communis	pycom111g01700 pycom17g01750
rosa_chinensis	RchiOBHm_Chr2g0173581
rosa_laevigata	RLG00000022204
rosa_multiflora	Rmu_sc0002538.1_g000021
rosa_roxburghii	Rroxscaffold_2G00078760
rosa_rugosa	Rorug02G0571500 Rorug02G0571500
rosa_samantha	Rh2AG650400 Rh2BG660800 Rh2CG623000 Rh2CG625700 Rh2DG671400 Rh2DG676100
rosa_wichuraiana	Rw2G053380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AclWI	GGATC	1 cut(s)	717
AcsI	RAATTY	2 cut(s)	251, 543
AcuI	CTGAAG	1 cut(s)	36
AcvI	CACGTG	1 cut(s)	706
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	3 cut(s)	49, 338, 570
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	414, 716
AjiI	CACGTC	1 cut(s)	161
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	8 cut(s)	11, 244, 462, 535, 601, 677, 776, 805
AluI	AGCT	8 cut(s)	11, 244, 462, 535, 601, 677, 776, 805
Alw21I	GWGCWC	2 cut(s)	246, 807
AlwI	GGATC	1 cut(s)	717
AoxI	GGCC	2 cut(s)	53, 572
ApeKI	GCWGC	3 cut(s)	11, 529, 532
ApoI	RAATTY	2 cut(s)	251, 543
AspA2I	CCTAGG	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	111, 209
AvrII	CCTAGG	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	522
BanII	GRGCYC	2 cut(s)	246, 807
BbrPI	CACGTG	1 cut(s)	706
Bbv12I	GWGCWC	2 cut(s)	246, 807
BbvI	GCAGC	2 cut(s)	541, 544
BccI	CCATC	2 cut(s)	20, 194
BceAI	ACGGC	1 cut(s)	377
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BclI	TGATCA	1 cut(s)	496
BfaI	CTAG	4 cut(s)	233, 365, 515, 777
BfuAI	ACCTGC	1 cut(s)	457
BisI	GCNGC	3 cut(s)	12, 530, 533
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	3 cut(s)	13, 531, 534
BmgBI	CACGTC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	53
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	103, 404
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	557
BsaAI	YACGTR	2 cut(s)	706, 757
BsaJI	CCNNGG	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	282, 312
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 338, 570
Bse118I	RCCGGY	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	49, 338, 570
BseMII	CTCAG	4 cut(s)	153, 261, 295, 705
BseRI	GAGGAG	1 cut(s)	488
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	541, 544
BsgI	GTGCAG	1 cut(s)	589
BshFI	GGCC	2 cut(s)	55, 574
BsiHKAI	GWGCWC	2 cut(s)	246, 807
BsiSI	CCGG	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	427
BslI	CCNNNNNNNGG	3 cut(s)	49, 338, 570
BsmFI	GGGAC	1 cut(s)	427
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	2 cut(s)	55, 574
Bsp1286I	GDGCHC	3 cut(s)	246, 522, 807
Bsp143I	GATC	3 cut(s)	496, 640, 709
BspANI	GGCC	2 cut(s)	55, 574
BspCNI	CTCAG	4 cut(s)	152, 260, 294, 704
BspHI	TCATGA	1 cut(s)	586
BspLI	GGNNCC	1 cut(s)	54
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	1 cut(s)	717
BspQI	GCTCTTC	2 cut(s)	415, 795
BsrFI	RCCGGY	1 cut(s)	348
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	496, 640, 709
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	556
Bst6I	CTCTTC	2 cut(s)	415, 795
BstBAI	YACGTR	2 cut(s)	706, 757
BstC8I	GCNNGC	3 cut(s)	464, 572, 807
BstDEI	CTNAG	4 cut(s)	139, 247, 281, 691
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	31
BstKTI	GATC	3 cut(s)	499, 643, 712
BstMBI	GATC	3 cut(s)	496, 640, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	414, 526, 782
BstSLI	GKGCMC	1 cut(s)	522
BstSNI	TACGTA	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	541, 544
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BsuRI	GGCC	2 cut(s)	55, 574
BtrI	CACGTC	1 cut(s)	161
BtsCI	GGATG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	464, 572, 807
CciI	TCATGA	1 cut(s)	586
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	53
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	4 cut(s)	80, 405, 523, 587
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	4 cut(s)	139, 247, 281, 691
DpnI	GATC	3 cut(s)	498, 642, 711
DpnII	GATC	3 cut(s)	496, 640, 709
Eam1104I	CTCTTC	2 cut(s)	415, 795
EarI	CTCTTC	2 cut(s)	415, 795
Ecl136II	GAGCTC	2 cut(s)	244, 805
Eco105I	TACGTA	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	246, 807
Eco53kI	GAGCTC	2 cut(s)	244, 805
Eco57I	CTGAAG	1 cut(s)	36
Eco72I	CACGTG	1 cut(s)	706
EcoICRI	GAGCTC	2 cut(s)	244, 805
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRI	GAATTC	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	246, 807
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	4 cut(s)	83, 408, 526, 590
FaqI	GGGAC	1 cut(s)	427
FatI	CATG	4 cut(s)	79, 404, 522, 586
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	12, 530, 533
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	2 cut(s)	246, 807
Fsp4HI	GCNGC	3 cut(s)	12, 530, 533
FspBI	CTAG	4 cut(s)	233, 365, 515, 777
GluI	GCNGC	3 cut(s)	12, 530, 533
HaeIII	GGCC	2 cut(s)	55, 574
HapII	CCGG	1 cut(s)	349
Hin1II	CATG	4 cut(s)	83, 408, 526, 590
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	291, 613, 722
HpaII	CCGG	1 cut(s)	349
HphI	GGTGA	2 cut(s)	111, 209
Hpy166II	GTNNAC	2 cut(s)	38, 703
Hpy188I	TCNGA	6 cut(s)	142, 250, 496, 511, 618, 694
Hpy188III	TCNNGA	6 cut(s)	102, 387, 548, 587, 638, 713
Hpy8I	GTNNAC	2 cut(s)	38, 703
HpyCH4III	ACNGT	1 cut(s)	556
HpyCH4IV	ACGT	5 cut(s)	144, 160, 705, 729, 756
HpyCH4V	TGCA	4 cut(s)	305, 395, 466, 570
HpyF10VI	GCNNNNNNNGC	3 cut(s)	414, 526, 782
HpyF3I	CTNAG	4 cut(s)	139, 247, 281, 691
HpySE526I	ACGT	5 cut(s)	144, 160, 705, 729, 756
Hsp92II	CATG	4 cut(s)	83, 408, 526, 590
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	3 cut(s)	496, 640, 709
LguI	GCTCTTC	2 cut(s)	415, 795
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	2 cut(s)	541, 544
LweI	GCATC	2 cut(s)	103, 404
MaeI	CTAG	4 cut(s)	233, 365, 515, 777
MaeII	ACGT	5 cut(s)	144, 160, 705, 729, 756
MaeIII	GTNAC	5 cut(s)	3, 99, 224, 621, 730
MalI	GATC	3 cut(s)	498, 642, 711
MboI	GATC	3 cut(s)	496, 640, 709
MboII	GAAGA	5 cut(s)	29, 122, 393, 402, 812
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	246, 522, 807
MluCI	AATT	5 cut(s)	47, 251, 543, 654, 751
MlyI	GAGTC	2 cut(s)	300, 731
MnlI	CCTC	8 cut(s)	148, 160, 172, 383, 415, 466, 469, 700
MseI	TTAA	2 cut(s)	353, 750
MslI	CAYNNNNRTG	1 cut(s)	403
MspI	CCGG	1 cut(s)	349
Mva1269I	GAATGC	1 cut(s)	799
MwoI	GCNNNNNNNGC	3 cut(s)	414, 526, 782
NdeII	GATC	3 cut(s)	496, 640, 709
NlaIII	CATG	4 cut(s)	83, 408, 526, 590
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	2 cut(s)	3, 99
PagI	TCATGA	1 cut(s)	586
PciSI	GCTCTTC	2 cut(s)	415, 795
PctI	GAATGC	1 cut(s)	799
PfeI	GAWTC	1 cut(s)	613
PkrI	GCNGC	3 cut(s)	13, 531, 534
PleI	GAGTC	2 cut(s)	299, 730
PmaCI	CACGTG	1 cut(s)	706
PmlI	CACGTG	1 cut(s)	706
PpsI	GAGTC	2 cut(s)	299, 730
Ppu21I	YACGTR	2 cut(s)	706, 757
Psp124BI	GAGCTC	2 cut(s)	246, 807
PspCI	CACGTG	1 cut(s)	706
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	709
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	1 cut(s)	403
SacI	GAGCTC	2 cut(s)	246, 807
SapI	GCTCTTC	2 cut(s)	415, 795
SaqAI	TTAA	2 cut(s)	353, 750
SatI	GCNGC	3 cut(s)	12, 530, 533
Sau3AI	GATC	3 cut(s)	496, 640, 709
Sau96I	GGNCC	1 cut(s)	53
SchI	GAGTC	2 cut(s)	300, 731
SduI	GDGCHC	3 cut(s)	246, 522, 807
SfaNI	GCATC	2 cut(s)	103, 404
SmiMI	CAYNNNNRTG	1 cut(s)	403
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SnaBI	TACGTA	1 cut(s)	757
Sse9I	AATT	5 cut(s)	47, 251, 543, 654, 751
SspI	AATATT	2 cut(s)	491, 503
SspMI	CTAG	4 cut(s)	233, 365, 515, 777
SstI	GAGCTC	2 cut(s)	246, 807
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	556
TaiI	ACGT	5 cut(s)	147, 163, 708, 732, 759
TaqI	TCGA	1 cut(s)	426
TasI	AATT	5 cut(s)	47, 251, 543, 654, 751
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	353, 750
Tru9I	TTAA	2 cut(s)	353, 750
TseFI	GTSAC	2 cut(s)	3, 99
TseI	GCWGC	3 cut(s)	11, 529, 532
Tsp45I	GTSAC	2 cut(s)	3, 99
TspDTI	ATGAA	6 cut(s)	96, 123, 393, 447, 575, 711
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	2 cut(s)	251, 543
XmaJI	CCTAGG	1 cut(s)	232
XspI	CTAG	4 cut(s)	233, 365, 515, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.