prolyl 4-hydroxylase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G28480 AT3G28480 AT3G28490 |
| fragaria_vesca | FvH4_6g49620 FvH4_6g49620 FvH4_6g49620 |
| malus_domestica | MD09G1043000.v1.1 MD17G1044500.v1.1 |
| prunus_persica | Prupe.3G274700_v2.0.a1 |
| pyrus_communis | pycom111g03360 pycom17g03920 |
| rosa_chinensis | RchiOBHm_Chr2g0169661 |
| rosa_laevigata | RLG00000021892 |
| rosa_multiflora | Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00081910 |
| rosa_rugosa | Rorug02G0541900 |
| rosa_samantha | Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300 |
| rosa_wichuraiana | Rw2G050910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 398 |
| AclWI | GGATC | 3 cut(s) | 77, 389, 458 |
| AcsI | RAATTY | 1 cut(s) | 57 |
| AfaI | GTAC | 4 cut(s) | 249, 462, 470, 809 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 593, 772 |
| AgsI | TTSAA | 1 cut(s) | 616 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 816, 848 |
| AlwI | GGATC | 3 cut(s) | 77, 389, 458 |
| ApeKI | GCWGC | 3 cut(s) | 320, 762, 852 |
| ApoI | RAATTY | 1 cut(s) | 57 |
| AspA2I | CCTAGG | 1 cut(s) | 116 |
| AspS9I | GGNCC | 2 cut(s) | 327, 640 |
| AsuHPI | GGTGA | 3 cut(s) | 239, 608, 682 |
| AvaII | GGWCC | 2 cut(s) | 327, 640 |
| AvrII | CCTAGG | 1 cut(s) | 116 |
| AxyI | CCTNAGG | 1 cut(s) | 339 |
| BbsI | GAAGAC | 1 cut(s) | 243 |
| BbvCI | CCTCAGC | 1 cut(s) | 531 |
| BbvI | GCAGC | 3 cut(s) | 307, 749, 839 |
| BccI | CCATC | 1 cut(s) | 696 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BfaI | CTAG | 5 cut(s) | 90, 117, 431, 437, 699 |
| BisI | GCNGC | 3 cut(s) | 321, 763, 853 |
| BlnI | CCTAGG | 1 cut(s) | 116 |
| BlsI | GCNGC | 3 cut(s) | 322, 764, 854 |
| Bme18I | GGWCC | 2 cut(s) | 327, 640 |
| BmgT120I | GGNCC | 2 cut(s) | 327, 640 |
| BmiI | GGNNCC | 1 cut(s) | 642 |
| BmsI | GCATC | 1 cut(s) | 769 |
| BpiI | GAAGAC | 1 cut(s) | 243 |
| Bpu10I | CCTNAGC | 1 cut(s) | 531 |
| BpuEI | CTTGAG | 1 cut(s) | 212 |
| BsaJI | CCNNGG | 3 cut(s) | 116, 587, 832 |
| BsaWI | WCCGGW | 1 cut(s) | 667 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 486, 516 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 593, 772 |
| Bse1I | ACTGG | 1 cut(s) | 518 |
| Bse21I | CCTNAGG | 1 cut(s) | 339 |
| BseDI | CCNNGG | 3 cut(s) | 116, 587, 832 |
| BseGI | GGATG | 1 cut(s) | 292 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 593, 772 |
| BseMII | CTCAG | 3 cut(s) | 159, 330, 545 |
| BseNI | ACTGG | 1 cut(s) | 518 |
| BseXI | GCAGC | 3 cut(s) | 307, 749, 839 |
| BsgI | GTGCAG | 1 cut(s) | 353 |
| BsiSI | CCGG | 1 cut(s) | 668 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 593, 772 |
| BsmI | GAATGC | 1 cut(s) | 794 |
| Bsp1407I | TGTACA | 1 cut(s) | 807 |
| Bsp143I | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| BspACI | CCGC | 1 cut(s) | 398 |
| BspCNI | CTCAG | 3 cut(s) | 158, 331, 544 |
| BspHI | TCATGA | 1 cut(s) | 754 |
| BspLI | GGNNCC | 1 cut(s) | 642 |
| BspPI | GGATC | 3 cut(s) | 77, 389, 458 |
| BsrGI | TGTACA | 1 cut(s) | 807 |
| BsrI | ACTGG | 1 cut(s) | 518 |
| BssECI | CCNNGG | 3 cut(s) | 116, 587, 832 |
| BssMI | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| BssT1I | CCWWGG | 2 cut(s) | 116, 832 |
| Bst4CI | ACNGT | 3 cut(s) | 242, 460, 502 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstAUI | TGTACA | 1 cut(s) | 807 |
| BstDEI | CTNAG | 3 cut(s) | 145, 339, 531 |
| BstF5I | GGATG | 1 cut(s) | 292 |
| BstKTI | GATC | 5 cut(s) | 85, 163, 397, 453, 754 |
| BstMBI | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 317 |
| BstV1I | GCAGC | 3 cut(s) | 307, 749, 839 |
| BstV2I | GAAGAC | 1 cut(s) | 243 |
| Bsu36I | CCTNAGG | 1 cut(s) | 339 |
| BtsCI | GGATG | 1 cut(s) | 292 |
| BtsI | GCAGTG | 1 cut(s) | 585 |
| BtsIMutI | CAGTG | 3 cut(s) | 247, 507, 585 |
| CciI | TCATGA | 1 cut(s) | 754 |
| Cfr13I | GGNCC | 2 cut(s) | 327, 640 |
| CseI | GACGC | 1 cut(s) | 608 |
| Csp6I | GTAC | 4 cut(s) | 248, 461, 469, 808 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 189, 224 |
| CviAII | CATG | 5 cut(s) | 324, 656, 710, 755, 811 |
| CviQI | GTAC | 4 cut(s) | 248, 461, 469, 808 |
| DdeI | CTNAG | 3 cut(s) | 145, 339, 531 |
| DpnI | GATC | 5 cut(s) | 84, 162, 396, 452, 753 |
| DpnII | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| Eco130I | CCWWGG | 2 cut(s) | 116, 832 |
| Eco47I | GGWCC | 2 cut(s) | 327, 640 |
| Eco81I | CCTNAGG | 1 cut(s) | 339 |
| EcoT14I | CCWWGG | 2 cut(s) | 116, 832 |
| ErhI | CCWWGG | 2 cut(s) | 116, 832 |
| FaeI | CATG | 5 cut(s) | 327, 659, 713, 758, 814 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 174, 206 |
| FatI | CATG | 5 cut(s) | 323, 655, 709, 754, 810 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| Fnu4HI | GCNGC | 3 cut(s) | 321, 763, 853 |
| FokI | GGATG | 1 cut(s) | 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 321, 763, 853 |
| FspBI | CTAG | 5 cut(s) | 90, 117, 431, 437, 699 |
| GluI | GCNGC | 3 cut(s) | 321, 763, 853 |
| HapII | CCGG | 1 cut(s) | 668 |
| HgaI | GACGC | 1 cut(s) | 608 |
| Hin1II | CATG | 5 cut(s) | 327, 659, 713, 758, 814 |
| HindIII | AAGCTT | 2 cut(s) | 188, 858 |
| HinfI | GANTC | 6 cut(s) | 5, 93, 112, 221, 706, 799 |
| HpaII | CCGG | 1 cut(s) | 668 |
| HphI | GGTGA | 3 cut(s) | 239, 608, 682 |
| Hpy166II | GTNNAC | 1 cut(s) | 748 |
| Hpy188I | TCNGA | 4 cut(s) | 148, 273, 450, 823 |
| Hpy188III | TCNNGA | 5 cut(s) | 43, 261, 338, 431, 755 |
| Hpy8I | GTNNAC | 1 cut(s) | 748 |
| HpyAV | CCTTC | 1 cut(s) | 511 |
| HpyCH4III | ACNGT | 3 cut(s) | 242, 460, 502 |
| HpyCH4V | TGCA | 7 cut(s) | 23, 323, 370, 563, 578, 782, 855 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 317 |
| HpyF3I | CTNAG | 3 cut(s) | 145, 339, 531 |
| Hsp92II | CATG | 5 cut(s) | 327, 659, 713, 758, 814 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| Kzo9I | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| LpnPI | CCDG | 8 cut(s) | 210, 246, 269, 351, 499, 535, 681, 768 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 749, 839 |
| LweI | GCATC | 1 cut(s) | 769 |
| MaeI | CTAG | 5 cut(s) | 90, 117, 431, 437, 699 |
| MaeIII | GTNAC | 2 cut(s) | 481, 596 |
| MalI | GATC | 5 cut(s) | 84, 162, 396, 452, 753 |
| MboI | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| MboII | GAAGA | 7 cut(s) | 29, 248, 326, 604, 611, 742, 808 |
| MluCI | AATT | 1 cut(s) | 57 |
| MlyI | GAGTC | 1 cut(s) | 106 |
| MmeI | TCCRAC | 1 cut(s) | 110 |
| MnlI | CCTC | 6 cut(s) | 145, 301, 334, 540, 582, 670 |
| MseI | TTAA | 1 cut(s) | 171 |
| MslI | CAYNNNNRTG | 1 cut(s) | 627 |
| MspA1I | CMGCKG | 1 cut(s) | 535 |
| MspI | CCGG | 1 cut(s) | 668 |
| Mva1269I | GAATGC | 1 cut(s) | 794 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 317 |
| NdeII | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| NlaIII | CATG | 5 cut(s) | 327, 659, 713, 758, 814 |
| NlaIV | GGNNCC | 1 cut(s) | 642 |
| NmuCI | GTSAC | 2 cut(s) | 481, 596 |
| PagI | TCATGA | 1 cut(s) | 754 |
| PctI | GAATGC | 1 cut(s) | 794 |
| PfeI | GAWTC | 5 cut(s) | 5, 93, 221, 706, 799 |
| PkrI | GCNGC | 3 cut(s) | 322, 764, 854 |
| PleI | GAGTC | 1 cut(s) | 106 |
| PpsI | GAGTC | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 1 cut(s) | 642 |
| PspPI | GGNCC | 2 cut(s) | 327, 640 |
| PvuII | CAGCTG | 1 cut(s) | 535 |
| RsaI | GTAC | 4 cut(s) | 249, 462, 470, 809 |
| RsaNI | GTAC | 4 cut(s) | 248, 461, 469, 808 |
| RseI | CAYNNNNRTG | 1 cut(s) | 627 |
| SaqAI | TTAA | 1 cut(s) | 171 |
| SatI | GCNGC | 3 cut(s) | 321, 763, 853 |
| Sau3AI | GATC | 5 cut(s) | 82, 160, 394, 450, 751 |
| Sau96I | GGNCC | 2 cut(s) | 327, 640 |
| SchI | GAGTC | 1 cut(s) | 106 |
| SfaNI | GCATC | 1 cut(s) | 769 |
| SinI | GGWCC | 2 cut(s) | 327, 640 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 627 |
| SmlI | CTYRAG | 1 cut(s) | 191 |
| SmoI | CTYRAG | 1 cut(s) | 191 |
| Sse9I | AATT | 1 cut(s) | 57 |
| SsiI | CCGC | 1 cut(s) | 398 |
| SspI | AATATT | 1 cut(s) | 14 |
| SspMI | CTAG | 5 cut(s) | 90, 117, 431, 437, 699 |
| StyI | CCWWGG | 2 cut(s) | 116, 832 |
| TaaI | ACNGT | 3 cut(s) | 242, 460, 502 |
| TaqI | TCGA | 3 cut(s) | 306, 405, 554 |
| TasI | AATT | 1 cut(s) | 57 |
| TatI | WGTACW | 2 cut(s) | 468, 807 |
| TfiI | GAWTC | 5 cut(s) | 5, 93, 221, 706, 799 |
| Tru1I | TTAA | 1 cut(s) | 171 |
| Tru9I | TTAA | 1 cut(s) | 171 |
| TscAI | CASTG | 3 cut(s) | 247, 507, 585 |
| TseFI | GTSAC | 2 cut(s) | 481, 596 |
| TseI | GCWGC | 3 cut(s) | 320, 762, 852 |
| Tsp45I | GTSAC | 2 cut(s) | 481, 596 |
| TspDTI | ATGAA | 3 cut(s) | 51, 611, 698 |
| TspGWI | ACGGA | 1 cut(s) | 653 |
| TspRI | CASTG | 3 cut(s) | 247, 507, 585 |
| VpaK11BI | GGWCC | 2 cut(s) | 327, 640 |
| XapI | RAATTY | 1 cut(s) | 57 |
| XbaI | TCTAGA | 1 cut(s) | 430 |
| XmaJI | CCTAGG | 1 cut(s) | 116 |
| XspI | CTAG | 5 cut(s) | 90, 117, 431, 437, 699 |