Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Forward (+)

37143930 .. 37147535

Gene Structure 3606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49620.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTCCCGCCTCCTTCTCGCTCTTTCCCTCTGCTTCTTCTTCCTCCTCCCTCACGTCTCCCATTCCAGAGCTCGAGTCAAGAACCTGATCGACCTCAAGCAAACTGTGGGATCCGTGATCAGAATGAAGAGAGGTCCTTCTTCTTCTACATTTGACCCGACTCACGTCTCTCAGCTCTCATGGAAACCCAGGGCATTTTTGTACAAGGGTTTTCTTACTGAGGAGGAGTGTGATCATCTGGTCAATCTGGCCAAGAATAAGCTGGAGGTGTCGATGGTGGCTGATAATGAGTCTGGTAAGAGTATAAAGAGTGAAGTGCGGACGAGCTCTGGAATGTTCCTTGCGAAAGCTCAGGATGAAGTAGTTGCCAACATTGAGACTAAGATTGCTGCATGGACCTTCCTTCCAATTGAGAATGGGGAGGCAATGCAGATACTGCATTATGAAAACGGTCAAAAGTATGAGCCACATTACGACTATTTTCATGACAAAGCTAATCAAGAATTAGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGTGAAACAGTCTTTCCCCAAGCACAGGTGAAAACGGTTGAAGCCAAGGACGAGGTCTTGTCTGATTGTGCTAAAAATGGCTATTCTGTGAAACCGTTCAAAGGTGATGCCTTGCTGTTCTTCAGTCTTCTTCCTAATGCAACAACCGATCCAAACAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCTGCAACCAAGTGGATTCATGTGAGATCCTTCGAAAAGTCATTGAAGAAGGCACTTAGCGGGGAGTGTACGGATGAGAATGTAAACTGCGCCACATGGGCTAAAGCCGGTGAGTGCGAAAAGAATCCTACATACATGGTGGGTTCAGCGGATCTTCCTGGGTTTTGTAGGAAGAGTTGCAAGGTCTGTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

320

Amino Acids

35.46

Weight (kDa)

7.12

Isoelectric Point (pI)

40.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy_3	PF13640	1 - 118	1.3e-19	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy	PF03171	1 - 118	1.6e-09	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	10, 322, 822, 911
AclWI	GGATC	5 cut(s)	108, 121, 707, 783, 921
AcoI	YGGCCR	2 cut(s)	252, 514
AcuI	CTGAAG	1 cut(s)	670
AfaI	GTAC	2 cut(s)	206, 832
AfiI	CCNNNNNNNGG	2 cut(s)	589, 665
AgsI	TTSAA	4 cut(s)	557, 605, 664, 808
AjiI	CACGTC	2 cut(s)	58, 169
AjnI	CCWGG	2 cut(s)	191, 919
AluBI	AGCT	7 cut(s)	74, 178, 265, 330, 353, 497, 735
AluI	AGCT	7 cut(s)	74, 178, 265, 330, 353, 497, 735
Alw21I	GWGCWC	2 cut(s)	76, 332
Alw26I	GTCTC	3 cut(s)	64, 175, 374
AlwI	GGATC	5 cut(s)	108, 121, 707, 783, 921
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	2 cut(s)	252, 514
ApeKI	GCWGC	2 cut(s)	392, 735
Asp700I	GAANNNNTTC	1 cut(s)	659
AspLEI	GCGC	1 cut(s)	854
AspS9I	GGNCC	2 cut(s)	137, 399
AsuHPI	GGTGA	5 cut(s)	578, 604, 680, 764, 884
AsuII	TTCGAA	1 cut(s)	795
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	2 cut(s)	137, 399
BalI	TGGCCA	2 cut(s)	254, 516
BamHI	GGATCC	1 cut(s)	113
BanII	GRGCYC	2 cut(s)	76, 332
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	2 cut(s)	76, 332
BbvI	GCAGC	2 cut(s)	379, 722
BccI	CCATC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	193, 921
BclI	TGATCA	2 cut(s)	120, 235
BcoDI	GTCTC	3 cut(s)	64, 175, 374
BglI	GCCNNNNNGGC	1 cut(s)	860
BisI	GCNGC	2 cut(s)	393, 736
BlsI	GCNGC	2 cut(s)	394, 737
Bme1390I	CCNGG	2 cut(s)	193, 921
Bme18I	GGWCC	2 cut(s)	137, 399
BmeT110I	CYCGRG	1 cut(s)	75
BmgBI	CACGTC	2 cut(s)	58, 169
BmgT120I	GGNCC	2 cut(s)	137, 399
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	2 cut(s)	193, 921
BmsI	GCATC	1 cut(s)	661
BoxI	GACNNNNGTC	1 cut(s)	167
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	1 cut(s)	287
Bpu10I	CCTNAGC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	83
BsaJI	CCNNGG	4 cut(s)	191, 192, 609, 920
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 665
Bse118I	RCCGGY	1 cut(s)	869
Bse3DI	GCAATG	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	193, 921
BseDI	CCNNGG	4 cut(s)	191, 192, 609, 920
BseGI	GGATG	2 cut(s)	364, 841
BseLI	CCNNNNNNNGG	2 cut(s)	589, 665
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	3 cut(s)	188, 213, 368
BseRI	GAGGAG	3 cut(s)	38, 239, 242
BseXI	GCAGC	2 cut(s)	379, 722
BshFI	GGCC	2 cut(s)	254, 516
BsiHKAI	GWGCWC	2 cut(s)	76, 332
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	870
BslI	CCNNNNNNNGG	2 cut(s)	589, 665
BsmAI	GTCTC	3 cut(s)	64, 175, 374
BsmBI	CGTCTC	2 cut(s)	64, 175
BsnI	GGCC	2 cut(s)	254, 516
BsoBI	CYCGRG	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	795
Bsp1286I	GDGCHC	2 cut(s)	76, 332
Bsp1407I	TGTACA	1 cut(s)	204
Bsp143I	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
BspACI	CCGC	4 cut(s)	10, 322, 822, 911
BspANI	GGCC	2 cut(s)	254, 516
BspCNI	CTCAG	3 cut(s)	187, 214, 367
BspHI	TCATGA	1 cut(s)	487
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	5 cut(s)	108, 121, 707, 783, 921
BspT104I	TTCGAA	1 cut(s)	795
BsrDI	GCAATG	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	869
BsrGI	TGTACA	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	869
BssECI	CCNNGG	4 cut(s)	191, 192, 609, 920
BssMI	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	193, 921
Bst4CI	ACNGT	8 cut(s)	109, 455, 521, 532, 574, 601, 660, 722
Bst6I	CTCTTC	2 cut(s)	125, 929
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	795
BstDEI	CTNAG	6 cut(s)	174, 222, 354, 384, 818, 957
BstF5I	GGATG	2 cut(s)	364, 841
BstHHI	GCGC	1 cut(s)	854
BstKTI	GATC	7 cut(s)	93, 116, 123, 238, 715, 791, 916
BstMAI	GTCTC	3 cut(s)	64, 175, 374
BstMBI	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	439, 860
BstNI	CCWGG	2 cut(s)	193, 921
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	191, 919
BstV1I	GCAGC	2 cut(s)	379, 722
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	3 cut(s)	113, 788, 913
BstYI	RGATCY	3 cut(s)	113, 788, 913
BsuRI	GGCC	2 cut(s)	254, 516
BtrI	CACGTC	2 cut(s)	58, 169
BtsCI	GGATG	2 cut(s)	364, 841
BtsIMutI	CAGTG	1 cut(s)	528
CaiI	CAGNNNCTG	1 cut(s)	439
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	1 cut(s)	854
Cfr10I	RCCGGY	1 cut(s)	869
Cfr13I	GGNCC	2 cut(s)	137, 399
Csp6I	GTAC	2 cut(s)	205, 831
CviAII	CATG	7 cut(s)	183, 396, 488, 728, 782, 858, 898
CviQI	GTAC	2 cut(s)	205, 831
DdeI	CTNAG	6 cut(s)	174, 222, 354, 384, 818, 957
DpnI	GATC	7 cut(s)	92, 115, 122, 237, 714, 790, 915
DpnII	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
EaeI	YGGCCR	2 cut(s)	252, 514
Eam1104I	CTCTTC	2 cut(s)	125, 929
EarI	CTCTTC	2 cut(s)	125, 929
Ecl136II	GAGCTC	2 cut(s)	74, 330
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	2 cut(s)	76, 332
Eco47I	GGWCC	2 cut(s)	137, 399
Eco53kI	GAGCTC	2 cut(s)	74, 330
Eco57I	CTGAAG	1 cut(s)	670
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	2 cut(s)	74, 330
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	191, 919
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	2 cut(s)	76, 332
ErhI	CCWWGG	1 cut(s)	609
Esp3I	CGTCTC	2 cut(s)	64, 175
FaeI	CATG	7 cut(s)	186, 399, 491, 731, 785, 861, 901
FatI	CATG	7 cut(s)	182, 395, 487, 727, 781, 857, 897
FauI	CCCGC	2 cut(s)	17, 815
FbaI	TGATCA	2 cut(s)	120, 235
Fnu4HI	GCNGC	2 cut(s)	393, 736
FokI	GGATG	2 cut(s)	371, 848
FriOI	GRGCYC	2 cut(s)	76, 332
Fsp4HI	GCNGC	2 cut(s)	393, 736
GlaI	GCGC	1 cut(s)	853
GluI	GCNGC	2 cut(s)	393, 736
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	2 cut(s)	254, 516
HapII	CCGG	1 cut(s)	870
HhaI	GCGC	1 cut(s)	854
Hin1II	CATG	7 cut(s)	186, 399, 491, 731, 785, 861, 901
Hin6I	GCGC	1 cut(s)	852
HinP1I	GCGC	1 cut(s)	852
HinfI	GANTC	6 cut(s)	5, 78, 163, 293, 778, 886
HpaII	CCGG	1 cut(s)	870
HphI	GGTGA	5 cut(s)	578, 604, 680, 764, 884
Hpy166II	GTNNAC	2 cut(s)	831, 847
Hpy188I	TCNGA	2 cut(s)	125, 628
Hpy188III	TCNNGA	6 cut(s)	69, 82, 333, 356, 488, 503
Hpy8I	GTNNAC	2 cut(s)	831, 847
HpyAV	CCTTC	6 cut(s)	26, 150, 412, 416, 802, 805
HpyCH4III	ACNGT	8 cut(s)	109, 455, 521, 532, 574, 601, 660, 722
HpyCH4IV	ACGT	2 cut(s)	57, 168
HpyCH4V	TGCA	7 cut(s)	395, 433, 442, 704, 727, 767, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	439, 860
HpyF3I	CTNAG	6 cut(s)	174, 222, 354, 384, 818, 957
HpySE526I	ACGT	2 cut(s)	57, 168
Hsp92II	CATG	7 cut(s)	186, 399, 491, 731, 785, 861, 901
HspAI	GCGC	1 cut(s)	852
Ksp22I	TGATCA	2 cut(s)	120, 235
Kzo9I	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
LmnI	GCTCC	1 cut(s)	732
Lsp1109I	GCAGC	2 cut(s)	379, 722
LweI	GCATC	1 cut(s)	661
MaeII	ACGT	2 cut(s)	57, 168
MalI	GATC	7 cut(s)	92, 115, 122, 237, 714, 790, 915
MboI	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	3 cut(s)	113, 788, 913
MhlI	GDGCHC	2 cut(s)	76, 332
MlsI	TGGCCA	2 cut(s)	254, 516
MluCI	AATT	2 cut(s)	411, 506
MluNI	TGGCCA	2 cut(s)	254, 516
MlyI	GAGTC	3 cut(s)	87, 157, 302
Mox20I	TGGCCA	2 cut(s)	254, 516
MroXI	GAANNNNTTC	1 cut(s)	659
MscI	TGGCCA	2 cut(s)	254, 516
Msp20I	TGGCCA	2 cut(s)	254, 516
MspA1I	CMGCKG	1 cut(s)	911
MspI	CCGG	1 cut(s)	870
MspR9I	CCNGG	2 cut(s)	193, 921
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	2 cut(s)	193, 921
MwoI	GCNNNNNNNGC	2 cut(s)	439, 860
NdeII	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
NlaIII	CATG	7 cut(s)	186, 399, 491, 731, 785, 861, 901
NlaIV	GGNNCC	1 cut(s)	115
NspV	TTCGAA	1 cut(s)	795
PaeR7I	CTCGAG	1 cut(s)	75
PagI	TCATGA	1 cut(s)	487
PasI	CCCWGGG	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	659
PfeI	GAWTC	3 cut(s)	5, 778, 886
PflFI	GACNNNGTC	1 cut(s)	617
PkrI	GCNGC	2 cut(s)	394, 737
PleI	GAGTC	3 cut(s)	86, 157, 301
PpsI	GAGTC	3 cut(s)	86, 157, 301
PpuMI	RGGWCCY	1 cut(s)	137
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	2 cut(s)	76, 332
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	191, 919
PspGI	CCWGG	2 cut(s)	191, 919
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	2 cut(s)	137, 399
PspPPI	RGGWCCY	1 cut(s)	137
PspXI	VCTCGAGB	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	3 cut(s)	113, 788, 913
PsyI	GACNNNGTC	1 cut(s)	617
RsaI	GTAC	2 cut(s)	206, 832
RsaNI	GTAC	2 cut(s)	205, 831
SacI	GAGCTC	2 cut(s)	76, 332
SatI	GCNGC	2 cut(s)	393, 736
Sau3AI	GATC	7 cut(s)	90, 113, 120, 235, 712, 788, 913
Sau96I	GGNCC	2 cut(s)	137, 399
SchI	GAGTC	3 cut(s)	87, 157, 302
ScrFI	CCNGG	2 cut(s)	193, 921
SduI	GDGCHC	2 cut(s)	76, 332
SfaNI	GCATC	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	75
SfuI	TTCGAA	1 cut(s)	795
SinI	GGWCC	2 cut(s)	137, 399
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	75, 98
SmoI	CTYRAG	2 cut(s)	75, 98
Sse9I	AATT	2 cut(s)	411, 506
SsiI	CCGC	4 cut(s)	10, 322, 822, 911
SstI	GAGCTC	2 cut(s)	76, 332
StyD4I	CCNGG	2 cut(s)	191, 919
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	8 cut(s)	109, 455, 521, 532, 574, 601, 660, 722
TaiI	ACGT	2 cut(s)	60, 171
TaqI	TCGA	4 cut(s)	76, 93, 275, 795
TasI	AATT	2 cut(s)	411, 506
TatI	WGTACW	1 cut(s)	204
TfiI	GAWTC	3 cut(s)	5, 778, 886
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	2 cut(s)	392, 735
TspDTI	ATGAA	6 cut(s)	143, 375, 462, 476, 770, 942
TspGWI	ACGGA	2 cut(s)	106, 848
TspRI	CASTG	1 cut(s)	535
Tth111I	GACNNNGTC	1 cut(s)	617
VpaK11BI	GGWCC	2 cut(s)	137, 399
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.