Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Forward (+)

67158863 .. 67159135

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0541900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGAGTACTACTTCGAGAACAAGCAAGGCTATTGTGGCAGCAAGTGTTGGAGTTGTGGAGGCACTGAAGGATCAAGGAATTTGCAGGTGGAATTCCGCAATAAGATCTATTCACCAACAAGCCAAGACCCAGTTCAGGTCCTTTTCTCAGGCCAACACCAAGTTATCTTCTTCTTCAACCTCTGCTTTGAGCAGAGTTAGAGATGAGAAGCTGAAGAAGTCGGAGGAGTCCTTGAGGACAGTCATGTACCTAAGCTGCTGGGGTCCCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

90

Amino Acids

9.93

Weight (kDa)

10.22

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3774	PF12609	12 - 89	9.1e-35	Wound-induced protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	75
Acc36I	ACCTGC	1 cut(s)	75
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	78, 91
AcuI	CTGAAG	2 cut(s)	86, 233
AfaI	GTAC	2 cut(s)	7, 248
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	1 cut(s)	177
AjuI	GAANNNNNNNTTGG	2 cut(s)	116, 148
AluBI	AGCT	2 cut(s)	211, 255
AluI	AGCT	2 cut(s)	211, 255
AlwI	GGATC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	2 cut(s)	38, 255
ApoI	RAATTY	2 cut(s)	78, 91
AspS9I	GGNCC	2 cut(s)	138, 263
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	2 cut(s)	138, 263
BbvI	GCAGC	2 cut(s)	50, 242
BfuAI	ACCTGC	1 cut(s)	75
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	2 cut(s)	39, 256
BlsI	GCNGC	2 cut(s)	40, 257
BmcAI	AGTACT	1 cut(s)	7
Bme18I	GGWCC	2 cut(s)	138, 263
BmgT120I	GGNCC	2 cut(s)	138, 263
BmiI	GGNNCC	2 cut(s)	264, 265
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	2 cut(s)	50, 242
BseYI	CCCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	70, 104
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	264, 265
BspMI	ACCTGC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	70, 104
Bst4CI	ACNGT	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	147, 251
BstKTI	GATC	2 cut(s)	73, 107
BstMBI	GATC	2 cut(s)	70, 104
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	50, 242
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	62
BveI	ACCTGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	138, 263
Csp6I	GTAC	2 cut(s)	6, 247
CviAII	CATG	1 cut(s)	244
CviJI	RGCY	5 cut(s)	29, 122, 152, 211, 255
CviKI_1	RGCY	5 cut(s)	29, 122, 152, 211, 255
CviQI	GTAC	2 cut(s)	6, 247
DdeI	CTNAG	2 cut(s)	147, 251
DpnI	GATC	2 cut(s)	72, 106
DpnII	GATC	2 cut(s)	70, 104
Eco47I	GGWCC	2 cut(s)	138, 263
Eco57I	CTGAAG	2 cut(s)	86, 233
EcoO109I	RGGNCCY	2 cut(s)	138, 263
EcoRI	GAATTC	1 cut(s)	91
FaeI	CATG	1 cut(s)	247
FaiI	YATR	1 cut(s)	245
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	39, 256
Fsp4HI	GCNGC	2 cut(s)	39, 256
GluI	GCNGC	2 cut(s)	39, 256
GsaI	CCCAGC	1 cut(s)	262
HaeIII	GGCC	1 cut(s)	152
Hin1II	CATG	1 cut(s)	247
HinfI	GANTC	1 cut(s)	227
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	147, 251
Hsp92II	CATG	1 cut(s)	247
KflI	GGGWCCC	1 cut(s)	263
Kzo9I	GATC	2 cut(s)	70, 104
LpnPI	CCDG	5 cut(s)	70, 121, 134, 143, 244
Lsp1109I	GCAGC	2 cut(s)	50, 242
MalI	GATC	2 cut(s)	72, 106
MboI	GATC	2 cut(s)	70, 104
MboII	GAAGA	4 cut(s)	159, 162, 165, 226
MflI	RGATCY	1 cut(s)	104
MluCI	AATT	2 cut(s)	78, 91
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	28, 201
MnlI	CCTC	4 cut(s)	52, 190, 217, 228
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	2 cut(s)	70, 104
NlaIII	CATG	1 cut(s)	247
NlaIV	GGNNCC	2 cut(s)	264, 265
PaqCI	CACCTGC	1 cut(s)	75
PkrI	GCNGC	2 cut(s)	40, 257
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	2 cut(s)	138, 263
Psp5II	RGGWCCY	2 cut(s)	138, 263
PspFI	CCCAGC	1 cut(s)	258
PspN4I	GGNNCC	2 cut(s)	264, 265
PspPI	GGNCC	2 cut(s)	138, 263
PspPPI	RGGWCCY	2 cut(s)	138, 263
PsuI	RGATCY	1 cut(s)	104
RsaI	GTAC	2 cut(s)	7, 248
RsaNI	GTAC	2 cut(s)	6, 247
SatI	GCNGC	2 cut(s)	39, 256
Sau3AI	GATC	2 cut(s)	70, 104
Sau96I	GGNCC	2 cut(s)	138, 263
ScaI	AGTACT	1 cut(s)	7
SchI	GAGTC	1 cut(s)	236
SetI	ASST	6 cut(s)	89, 140, 182, 213, 252, 257
SinI	GGWCC	2 cut(s)	138, 263
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	2 cut(s)	78, 91
SsiI	CCGC	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	14
TasI	AATT	2 cut(s)	78, 91
TatI	WGTACW	1 cut(s)	5
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	2 cut(s)	38, 255
TspRI	CASTG	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	138, 263
XapI	RAATTY	2 cut(s)	78, 91
ZrmI	AGTACT	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.