Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Forward (+)

78622247 .. 78624805

Gene Structure 2559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGATGCTCGCTTCTTTCTCGCCCTCTCCCTCTGTTTCTTCTTCTTCCTCTTCTTCTTCCCTCACGTCTCCCATTCCAGAGCTCGAATCTCAGACGTGATCCCCAAGAAGCAAACTGTGGGATCCCTGATCAGAATGAAGAGAGGTCCTTCTTCTGCTACATTCGATCCGTCTCGCGTCTCTCAGCTCTCTTGGAGTCCCAGGGCTTTTATTTATAAGAATTTTCTCTCTGAGGAGGAGTGTGATCATCTAATTAATCTGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTGACAATGACTCTGGTAAGAGTATAAAGAGTGAAGTGCGGACGAGCTCCGGAATGTTCCTTTCGAAAGCTCAAGATGAAGTAGTTTCCAACATTGAGTCCAAGATTGCTGCATGGACCTTCCTTCCAATTGAGAATGGGGAGGCAATGCAGATACTGCACTATGAAAATGGTCAAAAGTATGAGCCACATTTCGATTATTTTCATGACAAAGCTAATCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCTCATGCACAGGTGAAAACGGTTGAAGCCAAGGATGAGGTCTTGTCTGATTGTGCAAAAAATGGCTATTCTGTGAAACCATTCAAGGGTGATGCCTTGCTGTTCTTCAGTCTTCTTCCTAATGCCACAACCGATCCAAACAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCCGCAACCAAGTGGATTCATGTGAGATCCTTTGAAGATTCAGTCAGGCAGGGAACTAGCGGGGAGTGCAAGGATGAGAATGCAAACTGCTTTACATGGGCAAAAGCCGGTGAATGTGAGAAGAATCCTGTATACATGGTGGGTTCAGAGGATCTTCCCGGGTTTTGTAGGAAGAGTTGCAAGGTCTGTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

322

Amino Acids

36.06

Weight (kDa)

6.22

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	145 - 264	2.1e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	147 - 264	8.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	216
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	341
AciI	CCGC	3 cut(s)	331, 774, 831
AclWI	GGATC	7 cut(s)	94, 117, 130, 161, 716, 792, 930
AcoI	YGGCCR	2 cut(s)	261, 523
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	679
AfiI	CCNNNNNNNGG	1 cut(s)	674
AgsI	TTSAA	4 cut(s)	566, 614, 673, 806
AjiI	CACGTC	2 cut(s)	67, 97
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	7 cut(s)	83, 187, 274, 339, 362, 506, 744
AluI	AGCT	7 cut(s)	83, 187, 274, 339, 362, 506, 744
Alw21I	GWGCWC	2 cut(s)	85, 341
Alw26I	GTCTC	3 cut(s)	73, 177, 184
AlwI	GGATC	7 cut(s)	94, 117, 130, 161, 716, 792, 930
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	929
Aor13HI	TCCGGA	1 cut(s)	341
AoxI	GGCC	2 cut(s)	261, 523
ApeKI	GCWGC	2 cut(s)	401, 744
ApoI	RAATTY	1 cut(s)	220
AseI	ATTAAT	1 cut(s)	255
Asp700I	GAANNNNTTC	1 cut(s)	668
AspS9I	GGNCC	3 cut(s)	146, 408, 771
AsuC2I	CCSGG	2 cut(s)	930, 931
AsuHPI	GGTGA	4 cut(s)	613, 689, 773, 893
AsuII	TTCGAA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	929
AvaII	GGWCC	3 cut(s)	146, 408, 771
BalI	TGGCCA	2 cut(s)	263, 525
BamHI	GGATCC	1 cut(s)	122
BanII	GRGCYC	2 cut(s)	85, 341
BbsI	GAAGAC	1 cut(s)	692
Bbv12I	GWGCWC	2 cut(s)	85, 341
BbvI	GCAGC	2 cut(s)	388, 731
BciT130I	CCWGG	1 cut(s)	202
BclI	TGATCA	2 cut(s)	129, 244
BcnI	CCSGG	2 cut(s)	930, 931
BcoDI	GTCTC	3 cut(s)	73, 177, 184
BfaI	CTAG	2 cut(s)	275, 828
BisI	GCNGC	2 cut(s)	402, 745
BlsI	GCNGC	2 cut(s)	403, 746
Bme1390I	CCNGG	3 cut(s)	202, 930, 931
Bme18I	GGWCC	3 cut(s)	146, 408, 771
BmeT110I	CYCGRG	1 cut(s)	929
BmgBI	CACGTC	2 cut(s)	67, 97
BmgT120I	GGNCC	3 cut(s)	146, 408, 771
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	202, 930, 931
BmsI	GCATC	1 cut(s)	670
BpiI	GAAGAC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	2 cut(s)	930, 931
BsaJI	CCNNGG	5 cut(s)	200, 201, 285, 618, 929
BsaWI	WCCGGW	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	674
Bse118I	RCCGGY	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	341
BseBI	CCWGG	1 cut(s)	202
BseDI	CCNNGG	5 cut(s)	200, 201, 285, 618, 929
BseGI	GGATG	3 cut(s)	10, 628, 850
BseLI	CCNNNNNNNGG	1 cut(s)	674
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	105, 197, 222
BseRI	GAGGAG	2 cut(s)	248, 251
BseXI	GCAGC	2 cut(s)	388, 731
BsgI	GTGCAG	1 cut(s)	434
Bsh1236I	CGCG	1 cut(s)	177
BshFI	GGCC	2 cut(s)	263, 525
BsiHKAI	GWGCWC	2 cut(s)	85, 341
BsiHKCI	CYCGRG	1 cut(s)	929
BsiSI	CCGG	3 cut(s)	342, 879, 930
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	674
BsmAI	GTCTC	3 cut(s)	73, 177, 184
BsmBI	CGTCTC	3 cut(s)	73, 177, 184
BsmFI	GGGAC	1 cut(s)	183
BsmI	GAATGC	1 cut(s)	856
BsnI	GGCC	2 cut(s)	263, 525
BsoBI	CYCGRG	1 cut(s)	929
Bsp119I	TTCGAA	1 cut(s)	356
Bsp1286I	GDGCHC	2 cut(s)	85, 341
Bsp13I	TCCGGA	1 cut(s)	341
Bsp143I	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
Bsp19I	CCATGG	1 cut(s)	285
BspACI	CCGC	3 cut(s)	331, 774, 831
BspANI	GGCC	2 cut(s)	263, 525
BspCNI	CTCAG	3 cut(s)	104, 196, 223
BspEI	TCCGGA	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	124
BspPI	GGATC	7 cut(s)	94, 117, 130, 161, 716, 792, 930
BspT104I	TTCGAA	1 cut(s)	356
BsrDI	GCAATG	1 cut(s)	444
BsrFI	RCCGGY	1 cut(s)	878
BssAI	RCCGGY	1 cut(s)	878
BssECI	CCNNGG	5 cut(s)	200, 201, 285, 618, 929
BssMI	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
BssNAI	GTATAC	1 cut(s)	904
BssT1I	CCWWGG	2 cut(s)	285, 618
Bst1107I	GTATAC	1 cut(s)	904
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	6 cut(s)	118, 530, 541, 583, 610, 731
Bst6I	CTCTTC	3 cut(s)	56, 134, 938
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	91, 183, 231, 966
BstDSI	CCRYGG	1 cut(s)	285
BstF5I	GGATG	3 cut(s)	10, 628, 850
BstFNI	CGCG	1 cut(s)	177
BstKTI	GATC	8 cut(s)	102, 125, 132, 169, 247, 724, 800, 925
BstMAI	GTCTC	3 cut(s)	73, 177, 184
BstMBI	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
BstMWI	GCNNNNNNNGC	2 cut(s)	448, 837
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	3 cut(s)	200, 928, 929
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	388, 731
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	3 cut(s)	122, 797, 922
BstYI	RGATCY	3 cut(s)	122, 797, 922
BstZ17I	GTATAC	1 cut(s)	904
BsuRI	GGCC	2 cut(s)	263, 525
BtgI	CCRYGG	1 cut(s)	285
BtrI	CACGTC	2 cut(s)	67, 97
BtsCI	GGATG	3 cut(s)	10, 628, 850
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	1 cut(s)	10
CaiI	CAGNNNCTG	1 cut(s)	448
CciI	TCATGA	1 cut(s)	496
Cfr10I	RCCGGY	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	146, 408, 771
Cfr9I	CCCGGG	1 cut(s)	929
CseI	GACGC	1 cut(s)	166
CviAII	CATG	8 cut(s)	286, 405, 497, 593, 737, 791, 867, 907
DdeI	CTNAG	4 cut(s)	91, 183, 231, 966
DpnI	GATC	8 cut(s)	101, 124, 131, 168, 246, 723, 799, 924
DpnII	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
EaeI	YGGCCR	2 cut(s)	261, 523
Eam1104I	CTCTTC	3 cut(s)	56, 134, 938
EarI	CTCTTC	3 cut(s)	56, 134, 938
Ecl136II	GAGCTC	2 cut(s)	83, 339
Eco130I	CCWWGG	2 cut(s)	285, 618
Eco24I	GRGCYC	2 cut(s)	85, 341
Eco47I	GGWCC	3 cut(s)	146, 408, 771
Eco53kI	GAGCTC	2 cut(s)	83, 339
Eco57I	CTGAAG	1 cut(s)	679
Eco88I	CYCGRG	1 cut(s)	929
EcoICRI	GAGCTC	2 cut(s)	83, 339
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	2 cut(s)	285, 618
EcoT38I	GRGCYC	2 cut(s)	85, 341
ErhI	CCWWGG	2 cut(s)	285, 618
Esp3I	CGTCTC	3 cut(s)	73, 177, 184
FaeI	CATG	8 cut(s)	289, 408, 500, 596, 740, 794, 870, 910
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	8 cut(s)	285, 404, 496, 592, 736, 790, 866, 906
FauI	CCCGC	1 cut(s)	824
FbaI	TGATCA	2 cut(s)	129, 244
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	2 cut(s)	402, 745
FokI	GGATG	3 cut(s)	17, 635, 857
FriOI	GRGCYC	2 cut(s)	85, 341
Fsp4HI	GCNGC	2 cut(s)	402, 745
FspBI	CTAG	2 cut(s)	275, 828
GluI	GCNGC	2 cut(s)	402, 745
HaeIII	GGCC	2 cut(s)	263, 525
HapII	CCGG	3 cut(s)	342, 879, 930
HgaI	GACGC	1 cut(s)	166
Hin1II	CATG	8 cut(s)	289, 408, 500, 596, 740, 794, 870, 910
HinfI	GANTC	7 cut(s)	87, 196, 302, 389, 787, 809, 895
HpaII	CCGG	3 cut(s)	342, 879, 930
HphI	GGTGA	4 cut(s)	613, 689, 773, 893
Hpy166II	GTNNAC	1 cut(s)	904
Hpy188I	TCNGA	5 cut(s)	94, 134, 232, 637, 919
Hpy188III	TCNNGA	5 cut(s)	78, 342, 365, 497, 512
Hpy8I	GTNNAC	1 cut(s)	904
HpyAV	CCTTC	3 cut(s)	159, 421, 425
HpyCH4III	ACNGT	6 cut(s)	118, 530, 541, 583, 610, 731
HpyCH4IV	ACGT	2 cut(s)	66, 96
HpyCH4V	TGCA	9 cut(s)	404, 442, 451, 596, 644, 736, 840, 854, 951
HpyF10VI	GCNNNNNNNGC	2 cut(s)	448, 837
HpyF3I	CTNAG	4 cut(s)	91, 183, 231, 966
HpySE526I	ACGT	2 cut(s)	66, 96
Hsp92II	CATG	8 cut(s)	289, 408, 500, 596, 740, 794, 870, 910
Kpn2I	TCCGGA	1 cut(s)	341
Ksp22I	TGATCA	2 cut(s)	129, 244
Kzo9I	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
LmnI	GCTCC	2 cut(s)	344, 741
Lsp1109I	GCAGC	2 cut(s)	388, 731
LweI	GCATC	1 cut(s)	670
MaeI	CTAG	2 cut(s)	275, 828
MaeII	ACGT	2 cut(s)	66, 96
MalI	GATC	8 cut(s)	101, 124, 131, 168, 246, 723, 799, 924
MboI	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	3 cut(s)	122, 797, 922
MhlI	GDGCHC	2 cut(s)	85, 341
MlsI	TGGCCA	2 cut(s)	263, 525
MluCI	AATT	4 cut(s)	220, 252, 420, 515
MluNI	TGGCCA	2 cut(s)	263, 525
MlyI	GAGTC	3 cut(s)	205, 296, 398
MmeI	TCCRAC	1 cut(s)	405
Mox20I	TGGCCA	2 cut(s)	263, 525
MroI	TCCGGA	1 cut(s)	341
MroXI	GAANNNNTTC	1 cut(s)	668
MscI	TGGCCA	2 cut(s)	263, 525
MseI	TTAA	1 cut(s)	255
Msp20I	TGGCCA	2 cut(s)	263, 525
MspI	CCGG	3 cut(s)	342, 879, 930
MspR9I	CCNGG	3 cut(s)	202, 930, 931
MunI	CAATTG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	856
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	448, 837
NciI	CCSGG	2 cut(s)	930, 931
NcoI	CCATGG	1 cut(s)	285
NdeII	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
NlaIII	CATG	8 cut(s)	289, 408, 500, 596, 740, 794, 870, 910
NlaIV	GGNNCC	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	356
PagI	TCATGA	1 cut(s)	496
PasI	CCCWGGG	1 cut(s)	201
PctI	GAATGC	1 cut(s)	856
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	4 cut(s)	87, 787, 809, 895
PkrI	GCNGC	2 cut(s)	403, 746
PleI	GAGTC	3 cut(s)	204, 296, 397
PpsI	GAGTC	3 cut(s)	204, 296, 397
PpuMI	RGGWCCY	1 cut(s)	146
PshBI	ATTAAT	1 cut(s)	255
PsiI	TTATAA	1 cut(s)	216
Psp124BI	GAGCTC	2 cut(s)	85, 341
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	3 cut(s)	146, 408, 771
PspPPI	RGGWCCY	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	448
PsuI	RGATCY	3 cut(s)	122, 797, 922
SacI	GAGCTC	2 cut(s)	85, 341
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	2 cut(s)	402, 745
Sau3AI	GATC	8 cut(s)	99, 122, 129, 166, 244, 721, 797, 922
Sau96I	GGNCC	3 cut(s)	146, 408, 771
SchI	GAGTC	3 cut(s)	205, 296, 398
ScrFI	CCNGG	3 cut(s)	202, 930, 931
SduI	GDGCHC	2 cut(s)	85, 341
SfaNI	GCATC	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	356
SinI	GGWCC	3 cut(s)	146, 408, 771
SmaI	CCCGGG	1 cut(s)	931
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	220, 252, 420, 515
SsiI	CCGC	3 cut(s)	331, 774, 831
SspMI	CTAG	2 cut(s)	275, 828
SstI	GAGCTC	2 cut(s)	85, 341
StyD4I	CCNGG	3 cut(s)	200, 928, 929
StyI	CCWWGG	2 cut(s)	285, 618
TaaI	ACNGT	6 cut(s)	118, 530, 541, 583, 610, 731
TaiI	ACGT	2 cut(s)	69, 99
TaqI	TCGA	4 cut(s)	85, 165, 356, 486
TasI	AATT	4 cut(s)	220, 252, 420, 515
TfiI	GAWTC	4 cut(s)	87, 787, 809, 895
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	1 cut(s)	544
TseI	GCWGC	2 cut(s)	401, 744
TspDTI	ATGAA	6 cut(s)	152, 384, 471, 485, 779, 951
TspGWI	ACGGA	1 cut(s)	159
TspMI	CCCGGG	1 cut(s)	929
TspRI	CASTG	1 cut(s)	544
VpaK11BI	GGWCC	3 cut(s)	146, 408, 771
VspI	ATTAAT	1 cut(s)	255
XapI	RAATTY	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	903
XmnI	GAANNNNTTC	1 cut(s)	668
XspI	CTAG	2 cut(s)	275, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.