Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Reverse (-)

3231402 .. 3234141

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1044500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATCTTCGATGCTTTCTCGCACTTTCTCTCTGTTTCCTCTGCATTTTCCCTCACCTCGCCCATTCTCGAACTCGCATCCCAGTATTGCTCGAGCAGAAGAAAACCGAGGGATCGGTGATCAGATTGAGAAGAGGAGCTTCATCTGCTACCTTCGATCCGACTCGTGTCAGTCAGCTCTCATGGCGTCCCAGGGCGTTTTTGCATAAGGGGTTTCTTTCTGAGGAGGAATGTGATCATCTAATTGAAATTGCGAAGGATAAGCTAGAAAAGTCTATGGTGGCCGATAACGAGTCTGGCCAGAGTATGGAGAGTGAAGTCCGGACGAGCTCCGGCATGTTCCTTCTGAAAGCTCAGGATGAAATAGTTGCTAACATTGAGGCCAGGATTGCTGCATGGACCTTTCTTCCAGTTGAAAATGGTGAGTCCATTCAGATACTGCATTATGAACATGGTCAAAAGTACGAACCACATTTCGATTATTTTCAAGACAAGACTAACCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCCAATTCGGAGGGAAAACTGTCTCAACCTAAGGATGATGACATGTCTGATTGTGCTAAAGACGGCTATTCAGTGAAACCGCACAAGGGTGACGCCTTGCTGTTCTTCAGTCTCCATCCCAATGCAACAACCGATCCAAGCAGCTTGCACGGGAGTTGCCCTGTCATTGAGGGTGAGAAATGGTCTGCAACCAAGTGGATTCATGTGAGATCCTTCGAGAAGTCACTAATAAAGCGTGCAACTGGCGGGGTTTGTTCAGACGAAAATGATAACTGCCCCGTGTGGGCTAAAGCGGGAGAATGCAAAAAGAACCCAACTTATATGATAGGCACGGAGGGACTTCTTGGATACTGTAGGAAGAGTTGCAAGGCGTGTTCGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

321

Amino Acids

35.76

Weight (kDa)

6.32

Isoelectric Point (pI)

50.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	142 - 261	2.3e-10	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	145 - 261	1.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	307, 508
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	3 cut(s)	659, 825, 872
AclWI	GGATC	5 cut(s)	12, 121, 152, 707, 783
AcoI	YGGCCR	3 cut(s)	282, 298, 514
AcuI	CTGAAG	1 cut(s)	670
AcyI	GRCGYC	2 cut(s)	187, 672
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	4 cut(s)	307, 508, 665, 862
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	4 cut(s)	248, 416, 488, 557
AjnI	CCWGG	2 cut(s)	191, 383
AleI	CACNNNNGTG	1 cut(s)	666
AluBI	AGCT	6 cut(s)	140, 178, 265, 330, 353, 723
AluI	AGCT	6 cut(s)	140, 178, 265, 330, 353, 723
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	606, 695
AlwI	GGATC	5 cut(s)	12, 121, 152, 707, 783
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	4 cut(s)	282, 298, 381, 514
ApeKI	GCWGC	2 cut(s)	392, 720
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	5 cut(s)	47, 130, 434, 680, 764
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	399
AxyI	CCTNAGG	1 cut(s)	609
BalI	TGGCCA	2 cut(s)	300, 516
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	379, 732
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	2 cut(s)	193, 385
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	2 cut(s)	120, 235
BcoDI	GTCTC	2 cut(s)	606, 695
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	931
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	2 cut(s)	393, 721
BlsI	GCNGC	2 cut(s)	394, 722
Bme1390I	CCNGG	2 cut(s)	193, 385
Bme18I	GGWCC	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	193, 385
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	2, 87
BmuI	ACTGGG	1 cut(s)	77
BoxI	GACNNNNGTC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	354
BsaHI	GRCGYC	2 cut(s)	187, 672
BsaJI	CCNNGG	3 cut(s)	108, 191, 192
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 508, 665, 862
Bse1I	ACTGG	3 cut(s)	83, 410, 826
Bse21I	CCTNAGG	1 cut(s)	609
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	193, 385
BseDI	CCNNGG	3 cut(s)	108, 191, 192
BseGI	GGATG	4 cut(s)	78, 364, 619, 694
BseLI	CCNNNNNNNGG	4 cut(s)	307, 508, 665, 862
BseMII	CTCAG	2 cut(s)	213, 368
BseNI	ACTGG	3 cut(s)	83, 410, 826
BseRI	GAGGAG	2 cut(s)	150, 239
BseXI	GCAGC	2 cut(s)	379, 732
BshFI	GGCC	4 cut(s)	284, 300, 383, 516
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	322, 333
BslFI	GGGAC	2 cut(s)	174, 930
BslI	CCNNNNNNNGG	4 cut(s)	307, 508, 665, 862
BsmAI	GTCTC	2 cut(s)	606, 695
BsmFI	GGGAC	2 cut(s)	174, 930
BsmI	GAATGC	1 cut(s)	884
BsnI	GGCC	4 cut(s)	284, 300, 383, 516
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
BspACI	CCGC	3 cut(s)	659, 825, 872
BspANI	GGCC	4 cut(s)	284, 300, 383, 516
BspCNI	CTCAG	2 cut(s)	214, 367
BspEI	TCCGGA	1 cut(s)	321
BspPI	GGATC	5 cut(s)	12, 121, 152, 707, 783
BsrI	ACTGG	3 cut(s)	83, 410, 826
BssECI	CCNNGG	3 cut(s)	108, 191, 192
BssMI	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
BssNI	GRCGYC	2 cut(s)	187, 672
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	193, 385
Bst4CI	ACNGT	5 cut(s)	521, 532, 574, 600, 932
Bst6I	CTCTTC	2 cut(s)	127, 932
BstACI	GRCGYC	2 cut(s)	187, 672
BstC8I	GCNNGC	2 cut(s)	725, 816
BstDEI	CTNAG	3 cut(s)	222, 354, 609
BstF5I	GGATG	4 cut(s)	78, 364, 619, 694
BstKTI	GATC	7 cut(s)	7, 116, 123, 160, 238, 715, 791
BstMAI	GTCTC	2 cut(s)	606, 695
BstMBI	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
BstNI	CCWGG	2 cut(s)	193, 385
BstNSI	RCATGY	2 cut(s)	340, 625
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	191, 383
BstSFI	CTRYAG	1 cut(s)	931
BstV1I	GCAGC	2 cut(s)	379, 732
BstX2I	RGATCY	2 cut(s)	4, 788
BstYI	RGATCY	2 cut(s)	4, 788
Bsu36I	CCTNAGG	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	4 cut(s)	284, 300, 383, 516
BtsCI	GGATG	4 cut(s)	78, 364, 619, 694
BtsIMutI	CAGTG	2 cut(s)	528, 657
Cac8I	GCNNGC	2 cut(s)	725, 816
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	2 cut(s)	176, 680
Csp6I	GTAC	1 cut(s)	463
CviAII	CATG	6 cut(s)	183, 337, 396, 452, 622, 782
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	3 cut(s)	222, 354, 609
DpnI	GATC	7 cut(s)	6, 115, 122, 159, 237, 714, 790
DpnII	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
EaeI	YGGCCR	3 cut(s)	282, 298, 514
Eam1104I	CTCTTC	2 cut(s)	127, 932
EarI	CTCTTC	2 cut(s)	127, 932
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	670
Eco81I	CCTNAGG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	191, 383
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	6 cut(s)	186, 340, 399, 455, 625, 785
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	2 cut(s)	174, 930
FatI	CATG	6 cut(s)	182, 336, 395, 451, 621, 781
FauI	CCCGC	2 cut(s)	818, 865
FbaI	TGATCA	2 cut(s)	120, 235
Fnu4HI	GCNGC	2 cut(s)	393, 721
FokI	GGATG	4 cut(s)	65, 371, 626, 681
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	393, 721
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	393, 721
HaeIII	GGCC	4 cut(s)	284, 300, 383, 516
HapII	CCGG	2 cut(s)	322, 333
HgaI	GACGC	2 cut(s)	176, 680
Hin1I	GRCGYC	2 cut(s)	187, 672
Hin1II	CATG	6 cut(s)	186, 340, 399, 455, 625, 785
HinfI	GANTC	4 cut(s)	163, 293, 425, 778
HpaII	CCGG	2 cut(s)	322, 333
HphI	GGTGA	5 cut(s)	47, 130, 434, 680, 764
Hpy188I	TCNGA	8 cut(s)	125, 162, 223, 348, 435, 589, 628, 838
Hpy188III	TCNNGA	5 cut(s)	69, 322, 356, 488, 796
HpyAV	CCTTC	4 cut(s)	163, 250, 353, 802
HpyCH4III	ACNGT	5 cut(s)	521, 532, 574, 600, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
HpyF3I	CTNAG	3 cut(s)	222, 354, 609
Hsp92I	GRCGYC	2 cut(s)	187, 672
Hsp92II	CATG	6 cut(s)	186, 340, 399, 455, 625, 785
Kpn2I	TCCGGA	1 cut(s)	321
Ksp22I	TGATCA	2 cut(s)	120, 235
Kzo9I	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
LmnI	GCTCC	2 cut(s)	137, 335
Lsp1109I	GCAGC	2 cut(s)	379, 732
LweI	GCATC	2 cut(s)	2, 87
MaeI	CTAG	1 cut(s)	266
MaeIII	GTNAC	2 cut(s)	668, 801
MalI	GATC	7 cut(s)	6, 115, 122, 159, 237, 714, 790
MboI	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
MboII	GAAGA	5 cut(s)	112, 144, 398, 676, 949
MflI	RGATCY	2 cut(s)	4, 788
MhlI	GDGCHC	1 cut(s)	332
MlsI	TGGCCA	2 cut(s)	300, 516
MluCI	AATT	4 cut(s)	243, 249, 506, 583
MluNI	TGGCCA	2 cut(s)	300, 516
MlyI	GAGTC	3 cut(s)	157, 302, 434
MmeI	TCCRAC	1 cut(s)	185
Mox20I	TGGCCA	2 cut(s)	300, 516
MroI	TCCGGA	1 cut(s)	321
MscI	TGGCCA	2 cut(s)	300, 516
MslI	CAYNNNNRTG	2 cut(s)	666, 699
Msp20I	TGGCCA	2 cut(s)	300, 516
MspI	CCGG	2 cut(s)	322, 333
MspR9I	CCNGG	2 cut(s)	193, 385
Mva1269I	GAATGC	1 cut(s)	884
MvaI	CCWGG	2 cut(s)	193, 385
MwoI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
NdeII	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
NlaIII	CATG	6 cut(s)	186, 340, 399, 455, 625, 785
NmuCI	GTSAC	2 cut(s)	668, 801
NspI	RCATGY	2 cut(s)	340, 625
OliI	CACNNNNGTG	1 cut(s)	666
PaeR7I	CTCGAG	1 cut(s)	92
PasI	CCCWGGG	1 cut(s)	192
PciI	ACATGT	1 cut(s)	621
PctI	GAATGC	1 cut(s)	884
PfeI	GAWTC	1 cut(s)	778
PflMI	CCANNNNNTGG	2 cut(s)	307, 508
PkrI	GCNGC	2 cut(s)	394, 722
PleI	GAGTC	3 cut(s)	157, 301, 433
PpsI	GAGTC	3 cut(s)	157, 301, 433
PscI	ACATGT	1 cut(s)	621
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	191, 383
PspGI	CCWGG	2 cut(s)	191, 383
PspPI	GGNCC	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	2 cut(s)	4, 788
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	666, 699
SacI	GAGCTC	1 cut(s)	332
SatI	GCNGC	2 cut(s)	393, 721
Sau3AI	GATC	7 cut(s)	4, 113, 120, 157, 235, 712, 788
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	3 cut(s)	157, 302, 434
ScrFI	CCNGG	2 cut(s)	193, 385
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	2 cut(s)	2, 87
SfcI	CTRYAG	1 cut(s)	931
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	2 cut(s)	666, 699
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	243, 249, 506, 583
SsiI	CCGC	3 cut(s)	659, 825, 872
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	191, 383
TaaI	ACNGT	5 cut(s)	521, 532, 574, 600, 932
TaqI	TCGA	6 cut(s)	10, 70, 93, 156, 477, 795
TasI	AATT	4 cut(s)	243, 249, 506, 583
TfiI	GAWTC	1 cut(s)	778
TscAI	CASTG	2 cut(s)	535, 657
TseFI	GTSAC	2 cut(s)	668, 801
TseI	GCWGC	2 cut(s)	392, 720
Tsp45I	GTSAC	2 cut(s)	668, 801
TspDTI	ATGAA	4 cut(s)	132, 375, 462, 770
TspGWI	ACGGA	1 cut(s)	926
TspRI	CASTG	2 cut(s)	535, 657
Van91I	CCANNNNNTGG	2 cut(s)	307, 508
VpaK11BI	GGWCC	1 cut(s)	399
XceI	RCATGY	2 cut(s)	340, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.