Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Reverse (-)

2680615 .. 2683905

Gene Structure 3291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g03920.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGATCTTCGATGCTTTCTCGCACTTTCTCTCTGTTTTCTCTGCATTTTCCCTCACCTCGCCCATTCCCGAACTCGCATCCCAGTATTGCTCGAGCAGAAGAAAACGGAGGGATCGGTGATCAGATTGAGAAGAGGAGCTTCATCTGCTACCTTCGATCCGACTCGTGTCAGTCAGCTCTCATGGCGTCCCAGGGCGTTTTTGCATAAGGGTTTTCTTTCTGAGGAGGAATGTGATCATCTAATTGAAATTGCGAAGGATAAGCTAGAAAAGTCTATGGTGGCCGATAACGAGTCTGGCCAGAGTATGGAGAGTGAAGTCCGGACGAGCTCCGGCATGTTCCTTCTGAAAGCTCAGGATGAAATAGTTGCTAACATTGAGGCCAGGATTGCTGCATGGACCTTTCTTCCAGTTGAAAATGGGGAGTCCATTCAGATACTGCACTATGAACATGGTCAAAAGTACGAACCACATTTCGATTATTTTCAAGACAAGACTAACCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCCAATTCGGAGGGAAAACTGTCTCAACCTAAGGATGATGACACGTCTGATTGTGCTAAAGATGGCTATTCAGTGAAACCGTACAAGGGTGATGCCCTGCTGTTCTTCAGTCTCCATCCCAATGCAACAACCGATCCAAGCAGCTTGCACGGGAGTTGCCCTGTCATTGCGGGTGAGAAATGGACTCAACAGATGCGGGAAGAGTTGCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

265

Amino Acids

29.71

Weight (kDa)

5.6

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	307, 508
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	2 cut(s)	749, 775
AclWI	GGATC	4 cut(s)	12, 121, 152, 707
AcoI	YGGCCR	3 cut(s)	282, 298, 514
AcuI	CTGAAG	1 cut(s)	670
AcyI	GRCGYC	1 cut(s)	187
AfaI	GTAC	2 cut(s)	464, 662
AfiI	CCNNNNNNNGG	3 cut(s)	307, 508, 665
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	4 cut(s)	248, 416, 488, 557
AjiI	CACGTC	1 cut(s)	624
AjnI	CCWGG	2 cut(s)	191, 383
AluBI	AGCT	6 cut(s)	140, 178, 265, 330, 353, 723
AluI	AGCT	6 cut(s)	140, 178, 265, 330, 353, 723
Alw21I	GWGCWC	1 cut(s)	332
Alw26I	GTCTC	2 cut(s)	606, 695
AlwI	GGATC	4 cut(s)	12, 121, 152, 707
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	92
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	4 cut(s)	282, 298, 381, 514
ApeKI	GCWGC	2 cut(s)	392, 720
AspS9I	GGNCC	1 cut(s)	399
AsuHPI	GGTGA	4 cut(s)	47, 130, 680, 764
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	399
AxyI	CCTNAGG	1 cut(s)	609
BalI	TGGCCA	2 cut(s)	300, 516
BanII	GRGCYC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	379, 732
BccI	CCATC	2 cut(s)	635, 702
BciT130I	CCWGG	2 cut(s)	193, 385
BclI	TGATCA	2 cut(s)	120, 235
BcoDI	GTCTC	2 cut(s)	606, 695
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	393, 721
BlsI	GCNGC	2 cut(s)	394, 722
Bme1390I	CCNGG	2 cut(s)	193, 385
Bme18I	GGWCC	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	624
BmgT120I	GGNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	193, 385
BmrI	ACTGGG	1 cut(s)	77
BmsI	GCATC	4 cut(s)	2, 87, 661, 762
BmuI	ACTGGG	1 cut(s)	77
BoxI	GACNNNNGTC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	187
BsaJI	CCNNGG	2 cut(s)	191, 192
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 508, 665
Bse1I	ACTGG	2 cut(s)	83, 410
Bse21I	CCTNAGG	1 cut(s)	609
Bse3DI	GCAATG	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	193, 385
BseDI	CCNNGG	2 cut(s)	191, 192
BseGI	GGATG	4 cut(s)	78, 364, 619, 694
BseLI	CCNNNNNNNGG	3 cut(s)	307, 508, 665
BseMI	GCAATG	1 cut(s)	744
BseMII	CTCAG	2 cut(s)	213, 368
BseNI	ACTGG	2 cut(s)	83, 410
BseRI	GAGGAG	2 cut(s)	150, 239
BseXI	GCAGC	2 cut(s)	379, 732
BsgI	GTGCAG	1 cut(s)	425
BshFI	GGCC	4 cut(s)	284, 300, 383, 516
BsiHKAI	GWGCWC	1 cut(s)	332
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	2 cut(s)	322, 333
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	3 cut(s)	307, 508, 665
BsmAI	GTCTC	2 cut(s)	606, 695
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	4 cut(s)	284, 300, 383, 516
BsoBI	CYCGRG	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	332
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
BspACI	CCGC	2 cut(s)	749, 775
BspANI	GGCC	4 cut(s)	284, 300, 383, 516
BspCNI	CTCAG	2 cut(s)	214, 367
BspEI	TCCGGA	1 cut(s)	321
BspPI	GGATC	4 cut(s)	12, 121, 152, 707
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	83, 410
BssECI	CCNNGG	2 cut(s)	191, 192
BssMI	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
BssNI	GRCGYC	1 cut(s)	187
BssSI	CACGAG	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	193, 385
Bst4CI	ACNGT	5 cut(s)	521, 532, 574, 600, 660
Bst6I	CTCTTC	2 cut(s)	127, 774
BstACI	GRCGYC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	725, 789
BstDEI	CTNAG	4 cut(s)	222, 354, 609, 792
BstF5I	GGATG	4 cut(s)	78, 364, 619, 694
BstKTI	GATC	6 cut(s)	7, 116, 123, 160, 238, 715
BstMAI	GTCTC	2 cut(s)	606, 695
BstMBI	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
BstNI	CCWGG	2 cut(s)	193, 385
BstNSI	RCATGY	1 cut(s)	340
BstPAI	GACNNNNGTC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	191, 383
BstV1I	GCAGC	2 cut(s)	379, 732
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	4 cut(s)	284, 300, 383, 516
BtrI	CACGTC	1 cut(s)	624
BtsCI	GGATG	4 cut(s)	78, 364, 619, 694
BtsIMutI	CAGTG	2 cut(s)	528, 657
Cac8I	GCNNGC	2 cut(s)	725, 789
CaiI	CAGNNNCTG	1 cut(s)	439
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	2 cut(s)	463, 661
CviAII	CATG	4 cut(s)	183, 337, 396, 452
CviQI	GTAC	2 cut(s)	463, 661
DdeI	CTNAG	4 cut(s)	222, 354, 609, 792
DpnI	GATC	6 cut(s)	6, 115, 122, 159, 237, 714
DpnII	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
EaeI	YGGCCR	3 cut(s)	282, 298, 514
Eam1104I	CTCTTC	2 cut(s)	127, 774
EarI	CTCTTC	2 cut(s)	127, 774
Ecl136II	GAGCTC	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	670
Eco81I	CCTNAGG	1 cut(s)	609
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	330
EcoRII	CCWGG	2 cut(s)	191, 383
EcoT38I	GRGCYC	1 cut(s)	332
FaeI	CATG	4 cut(s)	186, 340, 399, 455
FaiI	YATR	8 cut(s)	184, 207, 278, 308, 338, 397, 447, 453
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	182, 336, 395, 451
FauI	CCCGC	2 cut(s)	742, 768
FbaI	TGATCA	2 cut(s)	120, 235
Fnu4HI	GCNGC	2 cut(s)	393, 721
FokI	GGATG	4 cut(s)	65, 371, 626, 681
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	2 cut(s)	393, 721
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	393, 721
HaeIII	GGCC	4 cut(s)	284, 300, 383, 516
HapII	CCGG	2 cut(s)	322, 333
HgaI	GACGC	1 cut(s)	176
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	186, 340, 399, 455
HinfI	GANTC	4 cut(s)	163, 293, 425, 763
HpaII	CCGG	2 cut(s)	322, 333
HphI	GGTGA	4 cut(s)	47, 130, 680, 764
Hpy188I	TCNGA	7 cut(s)	125, 162, 223, 348, 435, 589, 628
Hpy188III	TCNNGA	4 cut(s)	69, 322, 356, 488
HpyAV	CCTTC	3 cut(s)	163, 250, 353
HpyCH4III	ACNGT	5 cut(s)	521, 532, 574, 600, 660
HpyCH4IV	ACGT	1 cut(s)	623
HpyCH4V	TGCA	7 cut(s)	45, 205, 395, 442, 704, 727, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
HpyF3I	CTNAG	4 cut(s)	222, 354, 609, 792
HpySE526I	ACGT	1 cut(s)	623
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	186, 340, 399, 455
Kpn2I	TCCGGA	1 cut(s)	321
Ksp22I	TGATCA	2 cut(s)	120, 235
Kzo9I	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
LmnI	GCTCC	2 cut(s)	137, 335
Lsp1109I	GCAGC	2 cut(s)	379, 732
LweI	GCATC	4 cut(s)	2, 87, 661, 762
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	623
MalI	GATC	6 cut(s)	6, 115, 122, 159, 237, 714
MboI	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
MboII	GAAGA	5 cut(s)	112, 144, 398, 676, 791
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	1 cut(s)	332
MlsI	TGGCCA	2 cut(s)	300, 516
MluCI	AATT	4 cut(s)	243, 249, 506, 583
MluNI	TGGCCA	2 cut(s)	300, 516
MlyI	GAGTC	4 cut(s)	157, 302, 434, 757
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	8 cut(s)	63, 68, 103, 128, 217, 220, 373, 583
Mox20I	TGGCCA	2 cut(s)	300, 516
MroI	TCCGGA	1 cut(s)	321
MscI	TGGCCA	2 cut(s)	300, 516
MslI	CAYNNNNRTG	1 cut(s)	699
Msp20I	TGGCCA	2 cut(s)	300, 516
MspI	CCGG	2 cut(s)	322, 333
MspR9I	CCNGG	2 cut(s)	193, 385
MvaI	CCWGG	2 cut(s)	193, 385
MwoI	GCNNNNNNNGC	3 cut(s)	146, 184, 389
NdeII	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
NlaIII	CATG	4 cut(s)	186, 340, 399, 455
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	92
PasI	CCCWGGG	1 cut(s)	192
PflMI	CCANNNNNTGG	2 cut(s)	307, 508
PkrI	GCNGC	2 cut(s)	394, 722
PleI	GAGTC	4 cut(s)	157, 301, 433, 757
PpsI	GAGTC	4 cut(s)	157, 301, 433, 757
PshAI	GACNNNNGTC	1 cut(s)	167
Psp124BI	GAGCTC	1 cut(s)	332
Psp6I	CCWGG	2 cut(s)	191, 383
PspGI	CCWGG	2 cut(s)	191, 383
PspPI	GGNCC	1 cut(s)	399
PspXI	VCTCGAGB	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	464, 662
RsaNI	GTAC	2 cut(s)	463, 661
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	332
SatI	GCNGC	2 cut(s)	393, 721
Sau3AI	GATC	6 cut(s)	4, 113, 120, 157, 235, 712
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	4 cut(s)	157, 302, 434, 757
ScrFI	CCNGG	2 cut(s)	193, 385
SduI	GDGCHC	1 cut(s)	332
SfaNI	GCATC	4 cut(s)	2, 87, 661, 762
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	399
SlaI	CTCGAG	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	4 cut(s)	243, 249, 506, 583
SsiI	CCGC	2 cut(s)	749, 775
SspMI	CTAG	1 cut(s)	266
SstI	GAGCTC	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	191, 383
TaaI	ACNGT	5 cut(s)	521, 532, 574, 600, 660
TaiI	ACGT	1 cut(s)	626
TaqI	TCGA	4 cut(s)	10, 93, 156, 477
TasI	AATT	4 cut(s)	243, 249, 506, 583
TscAI	CASTG	2 cut(s)	535, 657
TseI	GCWGC	2 cut(s)	392, 720
TspDTI	ATGAA	3 cut(s)	132, 375, 462
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	535, 657
Van91I	CCANNNNNTGG	2 cut(s)	307, 508
VpaK11BI	GGWCC	1 cut(s)	399
XceI	RCATGY	1 cut(s)	340
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XhoI	CTCGAG	1 cut(s)	92
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.