Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Forward (+)

86596237 .. 86598653

Gene Structure 2417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG637300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGTTTTTTTTTTTTAATCTTGAATTTAATAATTTGATGGAGTATTGTGTGCATTTTTGCAGTGTGGGATCCCTGATCAGAATGAAGAGAGGTCCTTCTTCTGCTACATTCGATCCATCTCGCGTCTCTCAGCTCTCTTGGAGTCCCAGGGCTTTTATTTATAAGAATTTTCTCTCTGAGGAGGAGTGTGATCATCTAATTAATCTGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTGACAATGACTCTGGTAAGAGTCTAAAGAGAGAAGTGCGGACGAGCTCCGGAATGTTCCTTTCGAAAGCTCAAGATGAAGTAGTTTCCAACATTGAGTCCAAGATTGCTGCATGGACCTTCCTTCCAATTGAGAATGGGGAGGCAATGCAGATACTGCACTATGAAAATGGTCAAAAGTATGAGCCACATTTCGATTATTTTCATGACAAAGCTAATCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCTCATGCGCAGGTGAAAACAGTTGAAGCCAAGGATGAGGTCTTGTCTGATTGTGCTAAAAATGGCTATTCCGTGAAACCATTCAAGGGTGATGCCTTGCTGTTCTTCAGTCTTCTTCCTAATGCCACAACCGATCCAAACAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCCGCAACCAAGTGGATTCATGTGAGATCCTTCGAAAAGTCAATCAGGCAGGGAACTAGGGAGTGCGAGGATGAGAATGCAAACTGCTTTACATGGGCTAAAGCCGGTGAATGTGAGAAGAATCCTGTATACATGGTGGGTTCAGAGGATCTTCCCGGGTTTTGTAGGAAGAGTTGCAAGGTCTGTTCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

303

Amino Acids

34.19

Weight (kDa)

5.77

Isoelectric Point (pI)

40.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	127 - 246	1.8e-09	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	129 - 246	7.2e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	162
AarI	CACCTGC	1 cut(s)	535
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	535
AccI	GTMKAC	1 cut(s)	846
AccII	CGCG	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	287
AciI	CCGC	2 cut(s)	277, 720
AclWI	GGATC	6 cut(s)	63, 76, 107, 662, 738, 873
AcoI	YGGCCR	2 cut(s)	207, 469
AcsI	RAATTY	2 cut(s)	23, 166
AcuI	CTGAAG	1 cut(s)	625
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	23, 512, 560, 619
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	133, 220, 285, 308, 452, 690
AluI	AGCT	6 cut(s)	133, 220, 285, 308, 452, 690
Alw21I	GWGCWC	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	6 cut(s)	63, 76, 107, 662, 738, 873
AlwNI	CAGNNNCTG	1 cut(s)	394
Ama87I	CYCGRG	1 cut(s)	872
Aor13HI	TCCGGA	1 cut(s)	287
AoxI	GGCC	2 cut(s)	207, 469
ApeKI	GCWGC	2 cut(s)	347, 690
ApoI	RAATTY	2 cut(s)	23, 166
AseI	ATTAAT	1 cut(s)	201
Asp700I	GAANNNNTTC	1 cut(s)	614
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	92, 354, 717
AsuC2I	CCSGG	2 cut(s)	873, 874
AsuHPI	GGTGA	4 cut(s)	559, 635, 719, 836
AsuII	TTCGAA	2 cut(s)	302, 750
AvaI	CYCGRG	1 cut(s)	872
AvaII	GGWCC	3 cut(s)	92, 354, 717
BalI	TGGCCA	2 cut(s)	209, 471
BamHI	GGATCC	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	287
BbvI	GCAGC	2 cut(s)	334, 677
BccI	CCATC	2 cut(s)	31, 124
BciT130I	CCWGG	1 cut(s)	148
BclI	TGATCA	2 cut(s)	75, 190
BcnI	CCSGG	2 cut(s)	873, 874
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	2 cut(s)	221, 774
BfuAI	ACCTGC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	348, 691
BlsI	GCNGC	2 cut(s)	349, 692
Bme1390I	CCNGG	3 cut(s)	148, 873, 874
Bme18I	GGWCC	3 cut(s)	92, 354, 717
BmeT110I	CYCGRG	1 cut(s)	872
BmgT120I	GGNCC	3 cut(s)	92, 354, 717
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	3 cut(s)	148, 873, 874
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	1 cut(s)	638
Bpu14I	TTCGAA	2 cut(s)	302, 750
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	2 cut(s)	873, 874
BsaJI	CCNNGG	5 cut(s)	146, 147, 231, 564, 872
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse118I	RCCGGY	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	390
BseAI	TCCGGA	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	5 cut(s)	146, 147, 231, 564, 872
BseGI	GGATG	2 cut(s)	574, 793
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	143, 168
BseRI	GAGGAG	2 cut(s)	194, 197
BseXI	GCAGC	2 cut(s)	334, 677
BsgI	GTGCAG	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	209, 471
BsiHKAI	GWGCWC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	872
BsiSI	CCGG	3 cut(s)	288, 822, 873
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	799
BsnI	GGCC	2 cut(s)	209, 471
BsoBI	CYCGRG	1 cut(s)	872
Bsp119I	TTCGAA	2 cut(s)	302, 750
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	287
Bsp143I	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	2 cut(s)	277, 720
BspANI	GGCC	2 cut(s)	209, 471
BspCNI	CTCAG	2 cut(s)	142, 169
BspEI	TCCGGA	1 cut(s)	287
BspFNI	CGCG	1 cut(s)	123
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	6 cut(s)	63, 76, 107, 662, 738, 873
BspT104I	TTCGAA	2 cut(s)	302, 750
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	5 cut(s)	146, 147, 231, 564, 872
BssMI	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
BssNAI	GTATAC	1 cut(s)	847
BssT1I	CCWWGG	2 cut(s)	231, 564
Bst1107I	GTATAC	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	5 cut(s)	476, 487, 529, 556, 677
Bst6I	CTCTTC	2 cut(s)	80, 881
BstAPI	GCANNNNNTGC	1 cut(s)	394
BstBI	TTCGAA	2 cut(s)	302, 750
BstDEI	CTNAG	3 cut(s)	129, 177, 909
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	574, 793
BstFNI	CGCG	1 cut(s)	123
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	7 cut(s)	71, 78, 115, 193, 670, 746, 868
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	148
BstSCI	CCNGG	3 cut(s)	146, 871, 872
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	334, 677
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	3 cut(s)	68, 743, 865
BstYI	RGATCY	3 cut(s)	68, 743, 865
BstZ17I	GTATAC	1 cut(s)	847
BsuRI	GGCC	2 cut(s)	209, 471
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	574, 793
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 483
BveI	ACCTGC	1 cut(s)	535
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	544
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	92, 354, 717
Cfr9I	CCCGGG	1 cut(s)	872
CseI	GACGC	1 cut(s)	112
CviAII	CATG	8 cut(s)	232, 351, 443, 539, 683, 737, 810, 850
DdeI	CTNAG	3 cut(s)	129, 177, 909
DpnI	GATC	7 cut(s)	70, 77, 114, 192, 669, 745, 867
DpnII	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
EaeI	YGGCCR	2 cut(s)	207, 469
Eam1104I	CTCTTC	2 cut(s)	80, 881
EarI	CTCTTC	2 cut(s)	80, 881
Ecl136II	GAGCTC	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	231, 564
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	3 cut(s)	92, 354, 717
Eco53kI	GAGCTC	1 cut(s)	285
Eco57I	CTGAAG	1 cut(s)	625
Eco88I	CYCGRG	1 cut(s)	872
EcoICRI	GAGCTC	1 cut(s)	285
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	2 cut(s)	231, 564
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	2 cut(s)	231, 564
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	8 cut(s)	235, 354, 446, 542, 686, 740, 813, 853
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	8 cut(s)	231, 350, 442, 538, 682, 736, 809, 849
FbaI	TGATCA	2 cut(s)	75, 190
FblI	GTMKAC	1 cut(s)	846
Fnu4HI	GCNGC	2 cut(s)	348, 691
FokI	GGATG	2 cut(s)	581, 800
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	348, 691
FspBI	CTAG	2 cut(s)	221, 774
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	2 cut(s)	348, 691
HaeIII	GGCC	2 cut(s)	209, 471
HapII	CCGG	3 cut(s)	288, 822, 873
HgaI	GACGC	1 cut(s)	112
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	8 cut(s)	235, 354, 446, 542, 686, 740, 813, 853
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HinfI	GANTC	6 cut(s)	142, 248, 259, 335, 733, 838
HpaII	CCGG	3 cut(s)	288, 822, 873
HphI	GGTGA	4 cut(s)	559, 635, 719, 836
Hpy166II	GTNNAC	1 cut(s)	847
Hpy188I	TCNGA	4 cut(s)	80, 178, 583, 862
Hpy188III	TCNNGA	5 cut(s)	20, 288, 311, 443, 458
Hpy8I	GTNNAC	1 cut(s)	847
HpyAV	CCTTC	4 cut(s)	105, 367, 371, 757
HpyCH4III	ACNGT	5 cut(s)	476, 487, 529, 556, 677
HpyCH4V	TGCA	8 cut(s)	52, 60, 350, 388, 397, 682, 797, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	3 cut(s)	129, 177, 909
Hsp92II	CATG	8 cut(s)	235, 354, 446, 542, 686, 740, 813, 853
HspAI	GCGC	1 cut(s)	542
Kpn2I	TCCGGA	1 cut(s)	287
Ksp22I	TGATCA	2 cut(s)	75, 190
Kzo9I	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
LmnI	GCTCC	2 cut(s)	290, 687
Lsp1109I	GCAGC	2 cut(s)	334, 677
LweI	GCATC	1 cut(s)	616
MaeI	CTAG	2 cut(s)	221, 774
MalI	GATC	7 cut(s)	70, 77, 114, 192, 669, 745, 867
MboI	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
MboII	GAAGA	8 cut(s)	90, 97, 631, 638, 641, 847, 860, 898
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	3 cut(s)	68, 743, 865
MhlI	GDGCHC	1 cut(s)	287
MlsI	TGGCCA	2 cut(s)	209, 471
MluCI	AATT	6 cut(s)	23, 31, 166, 198, 366, 461
MluNI	TGGCCA	2 cut(s)	209, 471
MlyI	GAGTC	4 cut(s)	151, 242, 268, 344
MmeI	TCCRAC	1 cut(s)	351
Mox20I	TGGCCA	2 cut(s)	209, 471
MroI	TCCGGA	1 cut(s)	287
MroXI	GAANNNNTTC	1 cut(s)	614
MscI	TGGCCA	2 cut(s)	209, 471
MseI	TTAA	3 cut(s)	15, 27, 201
Msp20I	TGGCCA	2 cut(s)	209, 471
MspI	CCGG	3 cut(s)	288, 822, 873
MspR9I	CCNGG	3 cut(s)	148, 873, 874
MunI	CAATTG	1 cut(s)	366
Mva1269I	GAATGC	1 cut(s)	799
MvaI	CCWGG	1 cut(s)	148
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	2 cut(s)	873, 874
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
NlaIII	CATG	8 cut(s)	235, 354, 446, 542, 686, 740, 813, 853
NlaIV	GGNNCC	1 cut(s)	70
NsbI	TGCGCA	1 cut(s)	543
NspV	TTCGAA	2 cut(s)	302, 750
PagI	TCATGA	1 cut(s)	442
PaqCI	CACCTGC	1 cut(s)	535
PasI	CCCWGGG	1 cut(s)	147
PctI	GAATGC	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	733, 838
PkrI	GCNGC	2 cut(s)	349, 692
PleI	GAGTC	4 cut(s)	150, 242, 267, 343
PpsI	GAGTC	4 cut(s)	150, 242, 267, 343
PpuMI	RGGWCCY	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	201
PsiI	TTATAA	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	287
Psp5II	RGGWCCY	1 cut(s)	92
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	3 cut(s)	92, 354, 717
PspPPI	RGGWCCY	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	3 cut(s)	68, 743, 865
SacI	GAGCTC	1 cut(s)	287
SaqAI	TTAA	3 cut(s)	15, 27, 201
SatI	GCNGC	2 cut(s)	348, 691
Sau3AI	GATC	7 cut(s)	68, 75, 112, 190, 667, 743, 865
Sau96I	GGNCC	3 cut(s)	92, 354, 717
SchI	GAGTC	4 cut(s)	151, 242, 268, 344
ScrFI	CCNGG	3 cut(s)	148, 873, 874
SduI	GDGCHC	1 cut(s)	287
SfaNI	GCATC	1 cut(s)	616
SfuI	TTCGAA	2 cut(s)	302, 750
SinI	GGWCC	3 cut(s)	92, 354, 717
SmaI	CCCGGG	1 cut(s)	874
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	6 cut(s)	23, 31, 166, 198, 366, 461
SsiI	CCGC	2 cut(s)	277, 720
SspMI	CTAG	2 cut(s)	221, 774
SstI	GAGCTC	1 cut(s)	287
StyD4I	CCNGG	3 cut(s)	146, 871, 872
StyI	CCWWGG	2 cut(s)	231, 564
TaaI	ACNGT	5 cut(s)	476, 487, 529, 556, 677
TaqI	TCGA	4 cut(s)	111, 302, 432, 750
TasI	AATT	6 cut(s)	23, 31, 166, 198, 366, 461
TfiI	GAWTC	2 cut(s)	733, 838
Tru1I	TTAA	3 cut(s)	15, 27, 201
Tru9I	TTAA	3 cut(s)	15, 27, 201
TscAI	CASTG	2 cut(s)	67, 490
TseI	GCWGC	2 cut(s)	347, 690
TspDTI	ATGAA	6 cut(s)	98, 330, 417, 431, 725, 894
TspGWI	ACGGA	1 cut(s)	595
TspMI	CCCGGG	1 cut(s)	872
TspRI	CASTG	2 cut(s)	67, 490
VpaK11BI	GGWCC	3 cut(s)	92, 354, 717
VspI	ATTAAT	1 cut(s)	201
XapI	RAATTY	2 cut(s)	23, 166
XmaI	CCCGGG	1 cut(s)	872
XmiI	GTMKAC	1 cut(s)	846
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	2 cut(s)	221, 774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.