Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8239437.1

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 611

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8239437.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 278 bp

ctgacagtgaaaccattcaagggtgatgccttgctgttcttcagtcttcttcctaatgccacaaccgatccaaacagtttgcatgggagctgccctgtcattgagggtgagaaatggtccgcaaccaagtggattcatgtgagatccttcgaagattcaatcaggcagggaactagcggggagtgcaaggatcagaatgcaaactgctttacatgggcaaaagccggtgaatgtgagaagaatcctgtatacatggtgggttcagaggatcttcccgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

93

Amino Acids

10.21

Weight (kDa)

5.24

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	2 cut(s)	120, 177
AclWI	GGATC	4 cut(s)	62, 138, 198, 276
AcuI	CTGAAG	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	19, 159
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
AlwI	GGATC	4 cut(s)	62, 138, 198, 276
ApeKI	GCWGC	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	14
AspS9I	GGNCC	1 cut(s)	117
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	3 cut(s)	35, 119, 239
AsuII	TTCGAA	1 cut(s)	150
AvaII	GGWCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	77
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	1 cut(s)	174
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	117
BmgT120I	GGNCC	1 cut(s)	117
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	38
Bpu14I	TTCGAA	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	1 cut(s)	20
Bse118I	RCCGGY	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	225, 276
BslI	CCNNNNNNNGG	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	202
Bsp119I	TTCGAA	1 cut(s)	150
Bsp143I	GATC	4 cut(s)	67, 143, 190, 268
BspACI	CCGC	2 cut(s)	120, 177
BspPI	GGATC	4 cut(s)	62, 138, 198, 276
BspT104I	TTCGAA	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	224
BssAI	RCCGGY	1 cut(s)	224
BssMI	GATC	4 cut(s)	67, 143, 190, 268
BssNAI	GTATAC	1 cut(s)	250
Bst1107I	GTATAC	1 cut(s)	250
Bst4CI	ACNGT	2 cut(s)	7, 77
BstBI	TTCGAA	1 cut(s)	150
BstKTI	GATC	4 cut(s)	70, 146, 193, 271
BstMBI	GATC	4 cut(s)	67, 143, 190, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	77
BstV2I	GAAGAC	1 cut(s)	38
BstX2I	RGATCY	2 cut(s)	143, 268
BstYI	RGATCY	2 cut(s)	143, 268
BstZ17I	GTATAC	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	12
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	117
CviAII	CATG	4 cut(s)	83, 137, 213, 253
CviJI	RGCY	2 cut(s)	90, 224
CviKI_1	RGCY	2 cut(s)	90, 224
DpnI	GATC	4 cut(s)	69, 145, 192, 270
DpnII	GATC	4 cut(s)	67, 143, 190, 268
Eco47I	GGWCC	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	25
FaeI	CATG	4 cut(s)	86, 140, 216, 256
FaiI	YATR	5 cut(s)	84, 138, 214, 250, 254
FatI	CATG	4 cut(s)	82, 136, 212, 252
FauI	CCCGC	1 cut(s)	170
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	91
HapII	CCGG	2 cut(s)	225, 276
Hin1II	CATG	4 cut(s)	86, 140, 216, 256
HinfI	GANTC	3 cut(s)	133, 155, 241
HpaII	CCGG	2 cut(s)	225, 276
HphI	GGTGA	3 cut(s)	35, 119, 239
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	2 cut(s)	195, 265
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	7, 77
HpyCH4V	TGCA	3 cut(s)	82, 186, 200
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	86, 140, 216, 256
Kzo9I	GATC	4 cut(s)	67, 143, 190, 268
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	5 cut(s)	108, 148, 152, 238, 258
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	174
MalI	GATC	4 cut(s)	69, 145, 192, 270
MboI	GATC	4 cut(s)	67, 143, 190, 268
MboII	GAAGA	6 cut(s)	31, 38, 41, 164, 250, 263
MflI	RGATCY	2 cut(s)	143, 268
MnlI	CCTC	2 cut(s)	97, 259
MroXI	GAANNNNTTC	1 cut(s)	14
MspI	CCGG	2 cut(s)	225, 276
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	183
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	4 cut(s)	67, 143, 190, 268
NlaIII	CATG	4 cut(s)	86, 140, 216, 256
NspV	TTCGAA	1 cut(s)	150
PctI	GAATGC	1 cut(s)	202
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	133, 155, 241
PkrI	GCNGC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	117
PsuI	RGATCY	2 cut(s)	143, 268
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	4 cut(s)	67, 143, 190, 268
Sau96I	GGNCC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	150
SinI	GGWCC	1 cut(s)	117
SsiI	CCGC	2 cut(s)	120, 177
SspMI	CTAG	1 cut(s)	174
TaaI	ACNGT	2 cut(s)	7, 77
TaqI	TCGA	1 cut(s)	150
TfiI	GAWTC	3 cut(s)	133, 155, 241
TscAI	CASTG	1 cut(s)	12
TseI	GCWGC	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	117
XmiI	GTMKAC	1 cut(s)	249
XmnI	GAANNNNTTC	1 cut(s)	14
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.