Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Forward (+)

25363754 .. 25366958

Gene Structure 3205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G274700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATTCTCGATTTTTGCTCACTCTTTCTCTTTGTTTCCTTTGCATTTTCCCTCATCTCTCCTATTCCAGAAGTCGCGTCCCAATATTGATCGAGGAGAAGAAAACGGAGGGATCGGTGCTTAGACTGAGAAGAGGCGCTTCTTCTGCTACCTTCGATCCAACTCGGGTCACTCAACTCTCGTGGCATCCCAGGGCTTTTCTTTATAAGGGTTTTCTTTCTGAGGAGGAATGTGATCATCTAATCGAGATTGCAAAGAATAAGCTGGAGAAGTCTATGGTGGCTGATAATGAGTCTGGTAAGAGTATAGAGAGTGAAGTCCGGACAAGCTCCGGAATGTTCCTTCAGAAATCTCAGGATGAAGTAGTTGCTAACATTGAGGCCAGGATTGCTGCATGGACCTTTCTTCCAATTGAGAATGGGGAGTCCATTCAGATACTGCACTATGAACATGGCCAAAAGTACGAACCGCATTTTGATTATTTTCATGACAAGGCTAACCAAGAATTGGGTGGCCACCGTGTTGCCACTGTGTTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACTGTCTTTCCCAATACGGAGGCGCAAATGTCTCAATCTAAGGATGATGACGCGTCTGATTGTGCTAAACAAGGCTATTCAGTGAAACCCTACAAGGGTGATGCCTTGCTGTTCTTCAGTCTTCATCCTGATGCAACAACCGATCCAAGCAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCTGCAACCAAGTGGATTCATGTGAGATCCTTCGAAAAGTCACTAAAGCATGCAGTTAGCGGGGACTGTGCGGATGAGAATGACAACTGCCCCCTATGGGCCAAAGCTGGTGAATGTGAAAAGAACCCTACATATATGGTGGGTTCGAAGGGTCTTCCTGGGTTTTGTAGGAAGAGTTGCAATATGTGTTCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

320

Amino Acids

35.72

Weight (kDa)

5.86

Isoelectric Point (pI)

56.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	207
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccII	CGCG	2 cut(s)	78, 623
AccIII	TCCGGA	2 cut(s)	321, 332
AciI	CCGC	3 cut(s)	470, 822, 833
AclWI	GGATC	4 cut(s)	121, 152, 707, 783
AcoI	YGGCCR	2 cut(s)	454, 514
AcuI	CTGAAG	2 cut(s)	329, 670
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	508, 665, 859
AflIII	ACRYGT	1 cut(s)	621
AgsI	TTSAA	1 cut(s)	557
AjnI	CCWGG	3 cut(s)	191, 383, 919
AluBI	AGCT	4 cut(s)	265, 330, 735, 869
AluI	AGCT	4 cut(s)	265, 330, 735, 869
Alw26I	GTCTC	1 cut(s)	606
AlwI	GGATC	4 cut(s)	121, 152, 707, 783
AlwNI	CAGNNNCTG	1 cut(s)	439
Ama87I	CYCGRG	1 cut(s)	165
Aor13HI	TCCGGA	2 cut(s)	321, 332
AoxI	GGCC	4 cut(s)	381, 454, 514, 861
ApeKI	GCWGC	2 cut(s)	392, 735
AspLEI	GCGC	2 cut(s)	140, 595
AspS9I	GGNCC	2 cut(s)	399, 861
AsuHPI	GGTGA	3 cut(s)	680, 764, 884
AsuII	TTCGAA	2 cut(s)	795, 908
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	399
BalI	TGGCCA	2 cut(s)	456, 516
BauI	CACGAG	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	683, 908
BbvI	GCAGC	2 cut(s)	379, 722
BciT130I	CCWGG	3 cut(s)	193, 385, 921
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	606
BfaI	CTAG	1 cut(s)	958
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	2 cut(s)	393, 736
BlsI	GCNGC	2 cut(s)	394, 737
Bme1390I	CCNGG	3 cut(s)	193, 385, 921
Bme18I	GGWCC	1 cut(s)	399
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	2 cut(s)	399, 861
BmrFI	CCNGG	3 cut(s)	193, 385, 921
BmsI	GCATC	3 cut(s)	196, 661, 691
BpiI	GAAGAC	2 cut(s)	683, 908
BpmI	CTGGAG	1 cut(s)	287
Bpu14I	TTCGAA	2 cut(s)	795, 908
BsaJI	CCNNGG	3 cut(s)	191, 192, 920
BsaWI	WCCGGW	2 cut(s)	321, 332
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 665, 859
BseAI	TCCGGA	2 cut(s)	321, 332
BseBI	CCWGG	3 cut(s)	193, 385, 921
BseDI	CCNNGG	3 cut(s)	191, 192, 920
BseGI	GGATG	6 cut(s)	187, 364, 619, 694, 841, 953
BseLI	CCNNNNNNNGG	3 cut(s)	508, 665, 859
BseMII	CTCAG	3 cut(s)	119, 213, 368
BseRI	GAGGAG	2 cut(s)	110, 239
BseXI	GCAGC	2 cut(s)	379, 722
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	78, 623
BshFI	GGCC	4 cut(s)	383, 456, 516, 863
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	2 cut(s)	322, 333
BslFI	GGGAC	2 cut(s)	65, 839
BslI	CCNNNNNNNGG	3 cut(s)	508, 665, 859
BsmAI	GTCTC	1 cut(s)	606
BsmFI	GGGAC	2 cut(s)	65, 839
BsnI	GGCC	4 cut(s)	383, 456, 516, 863
BsoBI	CYCGRG	1 cut(s)	165
Bsp119I	TTCGAA	2 cut(s)	795, 908
Bsp13I	TCCGGA	2 cut(s)	321, 332
Bsp143I	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
BspACI	CCGC	3 cut(s)	470, 822, 833
BspANI	GGCC	4 cut(s)	383, 456, 516, 863
BspCNI	CTCAG	3 cut(s)	120, 214, 367
BspEI	TCCGGA	2 cut(s)	321, 332
BspFNI	CGCG	2 cut(s)	78, 623
BspHI	TCATGA	1 cut(s)	487
BspPI	GGATC	4 cut(s)	121, 152, 707, 783
BspT104I	TTCGAA	2 cut(s)	795, 908
BssECI	CCNNGG	3 cut(s)	191, 192, 920
BssMI	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
BssSI	CACGAG	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	181
Bst2UI	CCWGG	3 cut(s)	193, 385, 921
Bst4CI	ACNGT	4 cut(s)	521, 532, 574, 830
Bst6I	CTCTTC	2 cut(s)	127, 929
BstBI	TTCGAA	2 cut(s)	795, 908
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	5 cut(s)	122, 128, 222, 354, 609
BstF5I	GGATG	6 cut(s)	187, 364, 619, 694, 841, 953
BstFNI	CGCG	2 cut(s)	78, 623
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	140, 595
BstKTI	GATC	6 cut(s)	93, 116, 160, 238, 715, 791
BstMAI	GTCTC	1 cut(s)	606
BstMBI	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 389
BstNI	CCWGG	3 cut(s)	193, 385, 921
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	3 cut(s)	191, 383, 919
BstUI	CGCG	2 cut(s)	78, 623
BstV1I	GCAGC	2 cut(s)	379, 722
BstV2I	GAAGAC	2 cut(s)	683, 908
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
BsuRI	GGCC	4 cut(s)	383, 456, 516, 863
BtsCI	GGATG	6 cut(s)	187, 364, 619, 694, 841, 953
BtsIMutI	CAGTG	2 cut(s)	528, 657
Cac8I	GCNNGC	1 cut(s)	813
CaiI	CAGNNNCTG	1 cut(s)	439
CciI	TCATGA	1 cut(s)	487
CfoI	GCGC	2 cut(s)	140, 595
Cfr13I	GGNCC	2 cut(s)	399, 861
CseI	GACGC	3 cut(s)	67, 612, 629
Csp6I	GTAC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	164, 199
CviAII	CATG	6 cut(s)	396, 452, 488, 728, 782, 812
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	5 cut(s)	122, 128, 222, 354, 609
DpnI	GATC	6 cut(s)	92, 115, 159, 237, 714, 790
DpnII	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
EaeI	YGGCCR	2 cut(s)	454, 514
Eam1104I	CTCTTC	2 cut(s)	127, 929
EarI	CTCTTC	2 cut(s)	127, 929
Eco47I	GGWCC	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	329, 670
Eco88I	CYCGRG	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	191, 383, 919
FaeI	CATG	6 cut(s)	399, 455, 491, 731, 785, 815
FalI	AAGNNNNNCTT	2 cut(s)	124, 156
FaqI	GGGAC	2 cut(s)	65, 839
FatI	CATG	6 cut(s)	395, 451, 487, 727, 781, 811
FauI	CCCGC	1 cut(s)	815
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	393, 736
FokI	GGATG	6 cut(s)	174, 371, 626, 681, 848, 940
Fsp4HI	GCNGC	2 cut(s)	393, 736
FspBI	CTAG	1 cut(s)	958
GlaI	GCGC	2 cut(s)	139, 594
GluI	GCNGC	2 cut(s)	393, 736
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	383, 456, 516, 863
HapII	CCGG	2 cut(s)	322, 333
HgaI	GACGC	3 cut(s)	67, 612, 629
HhaI	GCGC	2 cut(s)	140, 595
Hin1II	CATG	6 cut(s)	399, 455, 491, 731, 785, 815
Hin6I	GCGC	2 cut(s)	138, 593
HinP1I	GCGC	2 cut(s)	138, 593
HinfI	GANTC	4 cut(s)	5, 293, 425, 778
HpaII	CCGG	2 cut(s)	322, 333
HphI	GGTGA	3 cut(s)	680, 764, 884
Hpy188I	TCNGA	4 cut(s)	223, 348, 435, 628
Hpy188III	TCNNGA	8 cut(s)	9, 69, 247, 322, 333, 356, 488, 698
HpyAV	CCTTC	4 cut(s)	163, 353, 802, 904
HpyCH4III	ACNGT	4 cut(s)	521, 532, 574, 830
HpyCH4V	TGCA	9 cut(s)	45, 254, 395, 442, 704, 727, 767, 815, 942
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 389
HpyF3I	CTNAG	5 cut(s)	122, 128, 222, 354, 609
Hsp92II	CATG	6 cut(s)	399, 455, 491, 731, 785, 815
HspAI	GCGC	2 cut(s)	138, 593
Kpn2I	TCCGGA	2 cut(s)	321, 332
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
LmnI	GCTCC	2 cut(s)	335, 732
Lsp1109I	GCAGC	2 cut(s)	379, 722
LweI	GCATC	3 cut(s)	196, 661, 691
MaeI	CTAG	1 cut(s)	958
MaeIII	GTNAC	2 cut(s)	169, 801
MalI	GATC	6 cut(s)	92, 115, 159, 237, 714, 790
MboI	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
MboII	GAAGA	8 cut(s)	112, 135, 144, 398, 676, 683, 908, 946
MfeI	CAATTG	1 cut(s)	411
MflI	RGATCY	1 cut(s)	788
MlsI	TGGCCA	2 cut(s)	456, 516
MluCI	AATT	2 cut(s)	411, 506
MluI	ACGCGT	1 cut(s)	621
MluNI	TGGCCA	2 cut(s)	456, 516
MlyI	GAGTC	2 cut(s)	302, 434
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	63, 88, 103, 128, 217, 220, 373, 583, 742
Mox20I	TGGCCA	2 cut(s)	456, 516
MroI	TCCGGA	2 cut(s)	321, 332
MscI	TGGCCA	2 cut(s)	456, 516
MslI	CAYNNNNRTG	1 cut(s)	699
Msp20I	TGGCCA	2 cut(s)	456, 516
MspI	CCGG	2 cut(s)	322, 333
MspR9I	CCNGG	3 cut(s)	193, 385, 921
MunI	CAATTG	1 cut(s)	411
MvaI	CCWGG	3 cut(s)	193, 385, 921
MvnI	CGCG	2 cut(s)	78, 623
MwoI	GCNNNNNNNGC	2 cut(s)	146, 389
NdeII	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
NlaIII	CATG	6 cut(s)	399, 455, 491, 731, 785, 815
NmuCI	GTSAC	2 cut(s)	169, 801
NspI	RCATGY	1 cut(s)	815
NspV	TTCGAA	2 cut(s)	795, 908
PaeI	GCATGC	1 cut(s)	815
PagI	TCATGA	1 cut(s)	487
PasI	CCCWGGG	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	5, 778
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	2 cut(s)	394, 737
PleI	GAGTC	2 cut(s)	301, 433
PpsI	GAGTC	2 cut(s)	301, 433
PsiI	TTATAA	1 cut(s)	207
Psp6I	CCWGG	3 cut(s)	191, 383, 919
PspGI	CCWGG	3 cut(s)	191, 383, 919
PspPI	GGNCC	2 cut(s)	399, 861
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	788
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
RseI	CAYNNNNRTG	1 cut(s)	699
SatI	GCNGC	2 cut(s)	393, 736
Sau3AI	GATC	6 cut(s)	90, 113, 157, 235, 712, 788
Sau96I	GGNCC	2 cut(s)	399, 861
SchI	GAGTC	2 cut(s)	302, 434
ScrFI	CCNGG	3 cut(s)	193, 385, 921
SetI	ASST	6 cut(s)	155, 267, 332, 404, 737, 871
SfaNI	GCATC	3 cut(s)	196, 661, 691
SfuI	TTCGAA	2 cut(s)	795, 908
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	699
SphI	GCATGC	1 cut(s)	815
Sse9I	AATT	2 cut(s)	411, 506
SsiI	CCGC	3 cut(s)	470, 822, 833
SspI	AATATT	1 cut(s)	87
SspMI	CTAG	1 cut(s)	958
StyD4I	CCNGG	3 cut(s)	191, 383, 919
TaaI	ACNGT	4 cut(s)	521, 532, 574, 830
TaqI	TCGA	6 cut(s)	10, 93, 156, 246, 795, 908
TasI	AATT	2 cut(s)	411, 506
TfiI	GAWTC	2 cut(s)	5, 778
TscAI	CASTG	2 cut(s)	535, 657
TseFI	GTSAC	2 cut(s)	169, 801
TseI	GCWGC	2 cut(s)	392, 735
Tsp45I	GTSAC	2 cut(s)	169, 801
TspDTI	ATGAA	6 cut(s)	375, 462, 476, 683, 770, 942
TspGWI	ACGGA	2 cut(s)	122, 602
TspRI	CASTG	2 cut(s)	535, 657
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	399
XceI	RCATGY	1 cut(s)	815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XspI	CTAG	1 cut(s)	958

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.