Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Reverse (-)

2034143 .. 2036073

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g03360.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTTCGATCATCTAATTGAAATAGCGAAGGATAAGCTAGAAAAGTCTATGGTGGCCGATAACGAGTCTGGTAAGAGTATAGAGAGTGAAGTCCGGACGAGCTCCGGAATGTTCCTTCTGAAAGCTCAGGATGAAGTAGTTGCTAACATTGAAGCCAGGATTGCTGCATGGACCTTTCTTCCAGTTGAAAATGGGGAGTCCATTCAGATACTGCACTATGAACACGGTCAAAAGTACGAACCGCATTTTGATTATTTTCATGACAAGGCTAACCAACAATTGGGTGGCCACCGTATTGCCACAGTATTGATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCTAATTCGGAGGGGAAACTGTCTCAAATTAAGGATGATGACGCTTCTGATTGTGCTAGAGACGGCTATTCAGTGAAACCGTACAAGGGTGATGCCCTGATGTTCTTCAGTCTCCATCCCAATGCAACCATCGATCCAAACAGCTTGCACGGGAGTTGCCCTGTCATTGAGGGCGAGAAATGGTCTGCAACCAAGTGGATTCATGTGATCGATCTTTCGAGAAGTCGCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

195

Amino Acids

21.82

Weight (kDa)

5.32

Isoelectric Point (pI)

39.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	280
AccIII	TCCGGA	2 cut(s)	93, 104
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	2 cut(s)	54, 286
AcuI	CTGAAG	1 cut(s)	442
AfaI	GTAC	2 cut(s)	236, 434
AfiI	CCNNNNNNNGG	2 cut(s)	280, 437
AgsI	TTSAA	4 cut(s)	20, 152, 188, 329
AjnI	CCWGG	1 cut(s)	155
AluBI	AGCT	4 cut(s)	37, 102, 125, 495
AluI	AGCT	4 cut(s)	37, 102, 125, 495
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	378, 405, 467
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	211
Aor13HI	TCCGGA	2 cut(s)	93, 104
AoxI	GGCC	2 cut(s)	54, 286
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	2 cut(s)	474, 488
BceAI	ACGGC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	157
BcoDI	GTCTC	3 cut(s)	378, 405, 467
BfaI	CTAG	2 cut(s)	38, 408
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	157
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmrFI	CCNGG	1 cut(s)	157
BmsI	GCATC	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	126
Bsa29I	ATCGAT	2 cut(s)	483, 561
BsaWI	WCCGGW	2 cut(s)	93, 104
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 437
Bse1I	ACTGG	1 cut(s)	182
BseAI	TCCGGA	2 cut(s)	93, 104
BseBI	CCWGG	1 cut(s)	157
BseCI	ATCGAT	2 cut(s)	483, 561
BseGI	GGATG	3 cut(s)	136, 391, 466
BseLI	CCNNNNNNNGG	2 cut(s)	280, 437
BseMII	CTCAG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	197
BshFI	GGCC	2 cut(s)	56, 288
BshVI	ATCGAT	2 cut(s)	483, 561
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	94, 105
BslI	CCNNNNNNNGG	2 cut(s)	280, 437
BsmAI	GTCTC	3 cut(s)	378, 405, 467
BsmBI	CGTCTC	1 cut(s)	405
BsnI	GGCC	2 cut(s)	56, 288
Bsp1286I	GDGCHC	1 cut(s)	104
Bsp13I	TCCGGA	2 cut(s)	93, 104
Bsp143I	GATC	4 cut(s)	7, 484, 558, 562
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	56, 288
BspCNI	CTCAG	1 cut(s)	139
BspDI	ATCGAT	2 cut(s)	483, 561
BspEI	TCCGGA	2 cut(s)	93, 104
BspHI	TCATGA	1 cut(s)	259
BspPI	GGATC	1 cut(s)	479
BsrI	ACTGG	1 cut(s)	182
BssMI	GATC	4 cut(s)	7, 484, 558, 562
Bst2UI	CCWGG	1 cut(s)	157
Bst4CI	ACNGT	6 cut(s)	227, 293, 304, 346, 372, 432
BstC8I	GCNNGC	1 cut(s)	497
BstDEI	CTNAG	1 cut(s)	126
BstF5I	GGATG	3 cut(s)	136, 391, 466
BstKTI	GATC	4 cut(s)	10, 487, 561, 565
BstMAI	GTCTC	3 cut(s)	378, 405, 467
BstMBI	GATC	4 cut(s)	7, 484, 558, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	161
BstNI	CCWGG	1 cut(s)	157
BstSCI	CCNGG	1 cut(s)	155
BstV1I	GCAGC	1 cut(s)	151
Bsu15I	ATCGAT	2 cut(s)	483, 561
BsuRI	GGCC	2 cut(s)	56, 288
BsuTUI	ATCGAT	2 cut(s)	483, 561
BtsCI	GGATG	3 cut(s)	136, 391, 466
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	497
CaiI	CAGNNNCTG	1 cut(s)	211
CciI	TCATGA	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	171
ClaI	ATCGAT	2 cut(s)	483, 561
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	235, 433
CviAII	CATG	3 cut(s)	168, 260, 554
CviJI	RGCY	9 cut(s)	37, 56, 102, 125, 155, 269, 288, 417, 495
CviKI_1	RGCY	9 cut(s)	37, 56, 102, 125, 155, 269, 288, 417, 495
CviQI	GTAC	2 cut(s)	235, 433
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	4 cut(s)	9, 486, 560, 564
DpnII	GATC	4 cut(s)	7, 484, 558, 562
EaeI	YGGCCR	2 cut(s)	54, 286
Ecl136II	GAGCTC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	442
EcoICRI	GAGCTC	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	155
EcoT38I	GRGCYC	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	405
FaeI	CATG	3 cut(s)	171, 263, 557
FaiI	YATR	6 cut(s)	50, 80, 169, 219, 261, 555
FatI	CATG	3 cut(s)	167, 259, 553
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	143, 398, 453
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	38, 408
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	56, 288
HapII	CCGG	2 cut(s)	94, 105
HgaI	GACGC	1 cut(s)	401
Hin1II	CATG	3 cut(s)	171, 263, 557
HinfI	GANTC	3 cut(s)	65, 197, 550
HpaII	CCGG	2 cut(s)	94, 105
HphI	GGTGA	1 cut(s)	452
Hpy188I	TCNGA	4 cut(s)	120, 207, 361, 400
Hpy188III	TCNNGA	5 cut(s)	94, 105, 128, 260, 570
HpyAV	CCTTC	2 cut(s)	22, 125
HpyCH4III	ACNGT	6 cut(s)	227, 293, 304, 346, 372, 432
HpyCH4V	TGCA	5 cut(s)	167, 214, 476, 499, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	161
HpyF3I	CTNAG	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	171, 263, 557
Kpn2I	TCCGGA	2 cut(s)	93, 104
Kzo9I	GATC	4 cut(s)	7, 484, 558, 562
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	9 cut(s)	54, 107, 113, 118, 142, 169, 195, 461, 525
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	38, 408
MalI	GATC	4 cut(s)	9, 486, 560, 564
MboI	GATC	4 cut(s)	7, 484, 558, 562
MboII	GAAGA	2 cut(s)	170, 448
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	104
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	15, 278, 355, 378
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	74, 206
MnlI	CCTC	2 cut(s)	355, 514
Mox20I	TGGCCA	1 cut(s)	288
MroI	TCCGGA	2 cut(s)	93, 104
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	2 cut(s)	381, 583
MslI	CAYNNNNRTG	1 cut(s)	471
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	2 cut(s)	94, 105
MspR9I	CCNGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	278
MvaI	CCWGG	1 cut(s)	157
MwoI	GCNNNNNNNGC	1 cut(s)	161
NdeII	GATC	4 cut(s)	7, 484, 558, 562
NlaIII	CATG	3 cut(s)	171, 263, 557
PagI	TCATGA	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	280
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	73, 205
PpsI	GAGTC	2 cut(s)	73, 205
Psp124BI	GAGCTC	1 cut(s)	104
Psp6I	CCWGG	1 cut(s)	155
PspGI	CCWGG	1 cut(s)	155
PspPI	GGNCC	1 cut(s)	171
PstNI	CAGNNNCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	236, 434
RsaNI	GTAC	2 cut(s)	235, 433
RseI	CAYNNNNRTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	104
SaqAI	TTAA	2 cut(s)	381, 583
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	7, 484, 558, 562
Sau96I	GGNCC	1 cut(s)	171
SchI	GAGTC	2 cut(s)	74, 206
ScrFI	CCNGG	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	104
SetI	ASST	5 cut(s)	39, 104, 127, 176, 497
SfaNI	GCATC	1 cut(s)	433
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	4 cut(s)	15, 278, 355, 378
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	38, 408
SstI	GAGCTC	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	155
TaaI	ACNGT	6 cut(s)	227, 293, 304, 346, 372, 432
TaqI	TCGA	4 cut(s)	6, 483, 561, 569
TasI	AATT	4 cut(s)	15, 278, 355, 378
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	381, 583
Tru9I	TTAA	2 cut(s)	381, 583
TscAI	CASTG	1 cut(s)	429
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	4 cut(s)	147, 234, 248, 542
TspRI	CASTG	1 cut(s)	429
Van91I	CCANNNNNTGG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XspI	CTAG	2 cut(s)	38, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.