Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009061

Physical Location & Seq

Genomic Coordinates Reverse (-)

2768001 .. 2770716

Gene Structure 2716 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1043000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGATCTTGGATATTTTCTCGCACTTTCTCTCTGTTTCCTCTGCATTTCCTCTCACCTCGCCCATTCCCTCGTTCCGGGATCGCTCGACGAGAAGAAAACGGAGGGATCGGTGATCAGATTTAGAAGAGGAGCTTCCTCTGCTACCTTCGATCCGACTCGTGTCAGTCAGCTCACATGGCGTCCAAGGGCGTTTTTGTTCAAGGGTTTTCTTTCTGAGGAGGAATGTGATCATCTAATTGAAATTGCGAAGAATAAGCTAGAAAAGTCTATGGTGGCCGATAACGAGTCTGGTAAGAGTATAGAGAGTGAAGTCCGGACGAGCTCCGGAATGTTCCTTCTGAAAGCTCAGGATGAAGTAGTTGCTAACATTGAAGCTAGGATTGCTGCATGGACCTTTCTTCCAATTGAAAATGGGGAGTCCATTCAGATACTGCACTATGAACACGGTCAAAAGTACGAACCGCATTTTGATTATTTTCATGACAAGGCTAACCAACAATTGGGTGGCCACCGTATCGCCACTGTATTAATGTATCTCTCTAATGTTGAAAAGGGTGGGGAAACAGTCTTTCCCAATTCGGAGGGAAAACTGTCTCAAATTAAGGATGACGACGCTTCTGATTGTGCTAAAGACGGCTATTCAGTGAAACCGTACAAGGGTGATGCCCTGATGTTCTTCAGTCTCCATCCCAATGGAACCACCGATCCAAGCAGCTTGCACGGGAGTTGCCCTGTCATTGAGGGCGAGAAATGGTCTGCAACCAAGTGGATTCATGTGAGATCCTTCGAGAAGTCGCTATTAAAGTCTGCAACTGGCAAGGGTTGTTCAGACGAGAATGATAACTGCCCCCTTTGGGCTAAAGCCGGTGAATGTCAAAAGAACCCGACTTATATGATAGGCACACAGGGCCTTCCTGGATATTGCAGGAAGAGTTGCGATGCGTGTTCGTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004656 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009790 GO:0009792 GO:0009987 GO:0010171 GO:0010172 GO:0012505 GO:0016491 GO:0016705 GO:0016706 GO:0018126 GO:0018193 GO:0018208 GO:0018996 GO:0019511 GO:0019538 GO:0019798 GO:0031543 GO:0031545 GO:0031974 GO:0032501 GO:0032502 GO:0036211 GO:0040002 GO:0040008 GO:0040014 GO:0040018 GO:0042303 GO:0042335 GO:0042338 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0048518 GO:0048598 GO:0048638 GO:0048639 GO:0048856 GO:0050789 GO:0050793 GO:0051094 GO:0051213 GO:0051239 GO:0051240 GO:0055114 GO:0065007 GO:0070013 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 map00330 map01100

Pfam Domains

Protein Families

2OG-FeII_Oxy_3 ShK

Protein Analysis

319

Amino Acids

35.21

Weight (kDa)

5.9

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	140 - 259	7.8e-10	2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3	PF13640	143 - 259	3e-19	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28480 AT3G28480 AT3G28490
fragaria_vesca	FvH4_6g49620 FvH4_6g49620 FvH4_6g49620
malus_domestica	MD09G1043000.v1.1 MD17G1044500.v1.1
prunus_persica	Prupe.3G274700_v2.0.a1
pyrus_communis	pycom111g03360 pycom17g03920
rosa_chinensis	RchiOBHm_Chr2g0169661
rosa_laevigata	RLG00000021892
rosa_multiflora	Rmu_co8239437.1_g000001 Rmu_sc0013280.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081910
rosa_rugosa	Rorug02G0541900
rosa_samantha	Rh2AG614200 Rh2BG626400 Rh2CG595700 Rh2DG637300
rosa_wichuraiana	Rw2G050910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccIII	TCCGGA	2 cut(s)	315, 326
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	6 cut(s)	12, 88, 115, 146, 701, 777
AcoI	YGGCCR	2 cut(s)	276, 508
AcuI	CTGAAG	1 cut(s)	664
AcyI	GRCGYC	1 cut(s)	181
AfaI	GTAC	2 cut(s)	458, 656
AfiI	CCNNNNNNNGG	4 cut(s)	76, 502, 659, 856
AgsI	TTSAA	5 cut(s)	202, 242, 374, 410, 551
AjnI	CCWGG	1 cut(s)	916
AloI	GAACNNNNNNTCC	2 cut(s)	691, 723
AluBI	AGCT	7 cut(s)	134, 172, 259, 324, 347, 377, 717
AluI	AGCT	7 cut(s)	134, 172, 259, 324, 347, 377, 717
Alw21I	GWGCWC	1 cut(s)	326
Alw26I	GTCTC	2 cut(s)	600, 689
AlwI	GGATC	6 cut(s)	12, 88, 115, 146, 701, 777
AlwNI	CAGNNNCTG	1 cut(s)	433
Aor13HI	TCCGGA	2 cut(s)	315, 326
AoxI	GGCC	3 cut(s)	276, 508, 910
ApeKI	GCWGC	2 cut(s)	386, 714
AseI	ATTAAT	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	393, 910
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	4 cut(s)	47, 124, 674, 881
AvaII	GGWCC	1 cut(s)	393
BalI	TGGCCA	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	326
BauI	CACGAG	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	326
BbvI	GCAGC	2 cut(s)	373, 726
BccI	CCATC	1 cut(s)	696
BceAI	ACGGC	1 cut(s)	652
BciT130I	CCWGG	1 cut(s)	918
BclI	TGATCA	2 cut(s)	114, 229
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	2 cut(s)	600, 689
BfaI	CTAG	2 cut(s)	260, 378
BisI	GCNGC	2 cut(s)	387, 715
BlsI	GCNGC	2 cut(s)	388, 716
Bme1390I	CCNGG	2 cut(s)	78, 918
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	393, 910
BmiI	GGNNCC	1 cut(s)	700
BmrFI	CCNGG	2 cut(s)	78, 918
BmsI	GCATC	2 cut(s)	655, 931
BoxI	GACNNNNGTC	1 cut(s)	161
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	181
BsaJI	CCNNGG	1 cut(s)	185
BsaWI	WCCGGW	2 cut(s)	315, 326
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 502, 659, 856
Bse118I	RCCGGY	1 cut(s)	866
Bse1I	ACTGG	1 cut(s)	820
BseAI	TCCGGA	2 cut(s)	315, 326
BseBI	CCWGG	1 cut(s)	918
BseDI	CCNNGG	1 cut(s)	185
BseGI	GGATG	3 cut(s)	358, 613, 688
BseLI	CCNNNNNNNGG	4 cut(s)	76, 502, 659, 856
BseMII	CTCAG	2 cut(s)	207, 362
BseNI	ACTGG	1 cut(s)	820
BseRI	GAGGAG	2 cut(s)	144, 233
BseXI	GCAGC	2 cut(s)	373, 726
BsgI	GTGCAG	1 cut(s)	419
BshFI	GGCC	3 cut(s)	278, 510, 912
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	4 cut(s)	77, 316, 327, 867
BslI	CCNNNNNNNGG	4 cut(s)	76, 502, 659, 856
BsmAI	GTCTC	2 cut(s)	600, 689
BsnI	GGCC	3 cut(s)	278, 510, 912
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp13I	TCCGGA	2 cut(s)	315, 326
Bsp143I	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	3 cut(s)	278, 510, 912
BspCNI	CTCAG	2 cut(s)	208, 361
BspEI	TCCGGA	2 cut(s)	315, 326
BspHI	TCATGA	1 cut(s)	481
BspLI	GGNNCC	1 cut(s)	700
BspPI	GGATC	6 cut(s)	12, 88, 115, 146, 701, 777
BsrFI	RCCGGY	1 cut(s)	866
BsrI	ACTGG	1 cut(s)	820
BssAI	RCCGGY	1 cut(s)	866
BssECI	CCNNGG	1 cut(s)	185
BssMI	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
BssNI	GRCGYC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	159
BssT1I	CCWWGG	1 cut(s)	185
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	918
Bst4CI	ACNGT	6 cut(s)	449, 515, 526, 568, 594, 654
Bst6I	CTCTTC	2 cut(s)	121, 926
BstACI	GRCGYC	1 cut(s)	181
BstC8I	GCNNGC	1 cut(s)	719
BstDEI	CTNAG	2 cut(s)	216, 348
BstF5I	GGATG	3 cut(s)	358, 613, 688
BstKTI	GATC	8 cut(s)	7, 83, 110, 117, 154, 232, 709, 785
BstMAI	GTCTC	2 cut(s)	600, 689
BstMBI	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
BstMWI	GCNNNNNNNGC	4 cut(s)	140, 178, 383, 909
BstNI	CCWGG	1 cut(s)	918
BstPAI	GACNNNNGTC	1 cut(s)	161
BstSCI	CCNGG	2 cut(s)	76, 916
BstV1I	GCAGC	2 cut(s)	373, 726
BstX2I	RGATCY	2 cut(s)	4, 782
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	2 cut(s)	4, 782
BsuRI	GGCC	3 cut(s)	278, 510, 912
BtsCI	GGATG	3 cut(s)	358, 613, 688
BtsIMutI	CAGTG	2 cut(s)	522, 651
Cac8I	GCNNGC	1 cut(s)	719
CaiI	CAGNNNCTG	1 cut(s)	433
CciI	TCATGA	1 cut(s)	481
Cfr10I	RCCGGY	1 cut(s)	866
Cfr13I	GGNCC	2 cut(s)	393, 910
CseI	GACGC	2 cut(s)	170, 623
Csp6I	GTAC	2 cut(s)	457, 655
CviAII	CATG	4 cut(s)	177, 390, 482, 776
CviQI	GTAC	2 cut(s)	457, 655
DdeI	CTNAG	2 cut(s)	216, 348
DpnI	GATC	8 cut(s)	6, 82, 109, 116, 153, 231, 708, 784
DpnII	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
EaeI	YGGCCR	2 cut(s)	276, 508
Eam1104I	CTCTTC	2 cut(s)	121, 926
EarI	CTCTTC	2 cut(s)	121, 926
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	1 cut(s)	185
Eco24I	GRGCYC	1 cut(s)	326
Eco47I	GGWCC	1 cut(s)	393
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	664
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	910
EcoRII	CCWGG	1 cut(s)	916
EcoT14I	CCWWGG	1 cut(s)	185
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	4 cut(s)	180, 393, 485, 779
FaiI	YATR	9 cut(s)	178, 272, 302, 391, 441, 483, 777, 894, 896
FalI	AAGNNNNNCTT	2 cut(s)	118, 150
FatI	CATG	4 cut(s)	176, 389, 481, 775
FbaI	TGATCA	2 cut(s)	114, 229
Fnu4HI	GCNGC	2 cut(s)	387, 715
FokI	GGATG	3 cut(s)	365, 620, 675
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	2 cut(s)	387, 715
FspBI	CTAG	2 cut(s)	260, 378
GluI	GCNGC	2 cut(s)	387, 715
HaeIII	GGCC	3 cut(s)	278, 510, 912
HapII	CCGG	4 cut(s)	77, 316, 327, 867
HgaI	GACGC	2 cut(s)	170, 623
Hin1I	GRCGYC	1 cut(s)	181
Hin1II	CATG	4 cut(s)	180, 393, 485, 779
HinfI	GANTC	4 cut(s)	157, 287, 419, 772
HpaII	CCGG	4 cut(s)	77, 316, 327, 867
HphI	GGTGA	4 cut(s)	47, 124, 674, 881
Hpy188I	TCNGA	8 cut(s)	119, 156, 217, 342, 429, 583, 622, 832
Hpy188III	TCNNGA	5 cut(s)	316, 327, 350, 482, 790
Hpy99I	CGWCG	2 cut(s)	92, 617
HpyAV	CCTTC	4 cut(s)	157, 347, 796, 923
HpyCH4III	ACNGT	6 cut(s)	449, 515, 526, 568, 594, 654
HpyCH4V	TGCA	7 cut(s)	45, 389, 436, 721, 761, 812, 927
HpyF10VI	GCNNNNNNNGC	4 cut(s)	140, 178, 383, 909
HpyF3I	CTNAG	2 cut(s)	216, 348
Hsp92I	GRCGYC	1 cut(s)	181
Hsp92II	CATG	4 cut(s)	180, 393, 485, 779
Kpn2I	TCCGGA	2 cut(s)	315, 326
Ksp22I	TGATCA	2 cut(s)	114, 229
Kzo9I	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
LmnI	GCTCC	2 cut(s)	131, 329
Lsp1109I	GCAGC	2 cut(s)	373, 726
LweI	GCATC	2 cut(s)	655, 931
MaeI	CTAG	2 cut(s)	260, 378
MalI	GATC	8 cut(s)	6, 82, 109, 116, 153, 231, 708, 784
MboI	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
MboII	GAAGA	6 cut(s)	106, 138, 262, 392, 670, 943
MfeI	CAATTG	2 cut(s)	405, 500
MflI	RGATCY	2 cut(s)	4, 782
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	6 cut(s)	237, 243, 405, 500, 577, 600
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	3 cut(s)	151, 296, 428
MmeI	TCCRAC	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	510
MroI	TCCGGA	2 cut(s)	315, 326
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	3 cut(s)	530, 603, 803
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	510
MspI	CCGG	4 cut(s)	77, 316, 327, 867
MspR9I	CCNGG	2 cut(s)	78, 918
MunI	CAATTG	2 cut(s)	405, 500
MvaI	CCWGG	1 cut(s)	918
MwoI	GCNNNNNNNGC	4 cut(s)	140, 178, 383, 909
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
NlaIII	CATG	4 cut(s)	180, 393, 485, 779
NlaIV	GGNNCC	1 cut(s)	700
PagI	TCATGA	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	772
PflMI	CCANNNNNTGG	1 cut(s)	502
PfoI	TCCNGGA	2 cut(s)	76, 916
PkrI	GCNGC	2 cut(s)	388, 716
PleI	GAGTC	3 cut(s)	151, 295, 427
PpsI	GAGTC	3 cut(s)	151, 295, 427
PshAI	GACNNNNGTC	1 cut(s)	161
PshBI	ATTAAT	1 cut(s)	530
Psp124BI	GAGCTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	916
PspGI	CCWGG	1 cut(s)	916
PspN4I	GGNNCC	1 cut(s)	700
PspPI	GGNCC	2 cut(s)	393, 910
PstNI	CAGNNNCTG	1 cut(s)	433
PsuI	RGATCY	2 cut(s)	4, 782
RsaI	GTAC	2 cut(s)	458, 656
RsaNI	GTAC	2 cut(s)	457, 655
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	530, 603, 803
SatI	GCNGC	2 cut(s)	387, 715
Sau3AI	GATC	8 cut(s)	4, 80, 107, 114, 151, 229, 706, 782
Sau96I	GGNCC	2 cut(s)	393, 910
SchI	GAGTC	3 cut(s)	151, 296, 428
ScrFI	CCNGG	2 cut(s)	78, 918
SduI	GDGCHC	1 cut(s)	326
SfaNI	GCATC	2 cut(s)	655, 931
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	693
Sse9I	AATT	6 cut(s)	237, 243, 405, 500, 577, 600
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	2 cut(s)	260, 378
SstI	GAGCTC	1 cut(s)	326
StyD4I	CCNGG	2 cut(s)	76, 916
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	6 cut(s)	449, 515, 526, 568, 594, 654
TaqI	TCGA	3 cut(s)	87, 150, 789
TasI	AATT	6 cut(s)	237, 243, 405, 500, 577, 600
TfiI	GAWTC	1 cut(s)	772
Tru1I	TTAA	3 cut(s)	530, 603, 803
Tru9I	TTAA	3 cut(s)	530, 603, 803
TscAI	CASTG	2 cut(s)	529, 651
TseI	GCWGC	2 cut(s)	386, 714
TspDTI	ATGAA	4 cut(s)	369, 456, 470, 764
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	529, 651
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	393
VspI	ATTAAT	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	503
XspI	CTAG	2 cut(s)	260, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.