Rh2AG614200

prolyl 4-hydroxylase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
83972982 .. 83975513
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG614200.1

Sequence Viewer

Length: 1050 bp
ATGGATGCTCGCTTCTTTCTCGCCCTCTCCCTCTGTTTCTTCTTCTTCCTCTTCTTCTTCCCTCACGTCTCCCATTCCAGAGCTCGAATCTCAGACGTGATCCCCAAGAAGCAAACGTATAATCTAAATTCATGTTTTTTTTTTTTTTTTAATCTTGAATTTAATAATTTGATGGAGTATTGTGTGCATTTTTGCAGTGTGGGATCCCTGATCAGAATGAAGAGAGGTCCTTCTTCTGCTACATTCGATCCGTCTCGCGTCTCTCAGCTCTCATGGAGTCCCAGGGCTTTTATTTATAAGAATTTTCTCTCTGAGGAGGAGTGTGATCATCTAATTAATCTGGCCAAAGATAAGCTAGAGGTGTCCATGGTGGCTGACAATGACTCTGGTAAGAGTATAAAGAGTGAAGTGCGGACAAGCTCCGGAATGTTCCTTTCGAAAGCTCAAGATGAAGTAGTTTCCAACATTGAGTCGAAGATTGCTGCATGGACCTTCCTTCCAATTGAGAATGGGGAGGCAATGCAGATACTGCACTATGAAAATGGTCAAAAGTATGAGCCACATTTCGATTATTTTCATGACAAAGCTAATCAAGAATTGGGTGGCCACCGTGTTGCCACTGTATTGATGTATCTCTCTAATGTTGACAAGGGTGGGGAAACAGTCTTTCCTCATGCGCAGGTGAAAACGGTTGAAGCCAAGGATGAGGTCTTGTCTGATTGTGCTAAAAATGGCTATTCCGTGAAGCCATTCAAGGGTGATGCCTTGCTGTTCTTCAGTCTTCTTCCTAATGCCACAACCGATCCAAACAGTTTGCATGGGAGCTGCCCTGTCATTGAGGGTGAGAAATGGTCTGCAACCAAGTGGATTCATGTGAGATCCTTCGAAAAGTCAATCAGGCAGGGAACTAGCGGGGAGTGCAAGGATGAGAATGCAAACTGCTTTACATGGGCTAAAGCCGGTGAATGTGAGAAGAATCCTGTATACATGGTGGGTTCAGAGGATCTTCCCGGGTTTTGTAGGAAGAGTTGCAAGGTCTGTTCATCTTAG

Protein Analysis

349

Amino Acids

39.45

Weight (kDa)

6.27

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 172 - 291 1.4e-09 2OG-Fe(II) oxygenase superfamily
2OG-FeII_Oxy_3 PF13640 174 - 291 1.5e-18 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
AarI CACCTGC 1 cut(s) 670
Acc16I TGCGCA 1 cut(s) 678
Acc36I ACCTGC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 984
AccII CGCG 1 cut(s) 258
AccIII TCCGGA 1 cut(s) 422
AciI CCGC 2 cut(s) 412, 912
AclWI GGATC 7 cut(s) 94, 198, 211, 242, 797, 873, 1011
AcoI YGGCCR 2 cut(s) 342, 604
AcsI RAATTY 3 cut(s) 127, 158, 301
AcuI CTGAAG 1 cut(s) 760
AfiI CCNNNNNNNGG 1 cut(s) 755
AgsI TTSAA 3 cut(s) 158, 695, 754
AjiI CACGTC 2 cut(s) 67, 97
AjnI CCWGG 1 cut(s) 281
AluBI AGCT 7 cut(s) 83, 268, 355, 420, 443, 587, 825
AluI AGCT 7 cut(s) 83, 268, 355, 420, 443, 587, 825
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 3 cut(s) 73, 258, 265
AlwI GGATC 7 cut(s) 94, 198, 211, 242, 797, 873, 1011
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 1 cut(s) 1010
Aor13HI TCCGGA 1 cut(s) 422
AoxI GGCC 2 cut(s) 342, 604
ApeKI GCWGC 2 cut(s) 482, 825
ApoI RAATTY 3 cut(s) 127, 158, 301
AseI ATTAAT 1 cut(s) 336
Asp700I GAANNNNTTC 1 cut(s) 749
AspLEI GCGC 1 cut(s) 679
AspS9I GGNCC 2 cut(s) 227, 489
AsuC2I CCSGG 2 cut(s) 1011, 1012
AsuHPI GGTGA 4 cut(s) 694, 770, 854, 974
AsuII TTCGAA 2 cut(s) 437, 885
AvaI CYCGRG 1 cut(s) 1010
AvaII GGWCC 2 cut(s) 227, 489
BalI TGGCCA 2 cut(s) 344, 606
BamHI GGATCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 2 cut(s) 469, 812
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 283
BclI TGATCA 2 cut(s) 210, 325
BcnI CCSGG 2 cut(s) 1011, 1012
BcoDI GTCTC 3 cut(s) 73, 258, 265
BfaI CTAG 2 cut(s) 356, 909
BfuAI ACCTGC 1 cut(s) 670
BisI GCNGC 2 cut(s) 483, 826
BlsI GCNGC 2 cut(s) 484, 827
Bme1390I CCNGG 3 cut(s) 283, 1011, 1012
Bme18I GGWCC 2 cut(s) 227, 489
BmeT110I CYCGRG 1 cut(s) 1010
BmgBI CACGTC 2 cut(s) 67, 97
BmgT120I GGNCC 2 cut(s) 227, 489
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 3 cut(s) 283, 1011, 1012
BmsI GCATC 1 cut(s) 751
BpiI GAAGAC 1 cut(s) 773
Bpu14I TTCGAA 2 cut(s) 437, 885
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 2 cut(s) 1011, 1012
BsaJI CCNNGG 5 cut(s) 281, 282, 366, 699, 1010
BsaWI WCCGGW 1 cut(s) 422
Bsc4I CCNNNNNNNGG 1 cut(s) 755
Bse118I RCCGGY 1 cut(s) 959
Bse3DI GCAATG 1 cut(s) 525
BseAI TCCGGA 1 cut(s) 422
BseBI CCWGG 1 cut(s) 283
BseDI CCNNGG 5 cut(s) 281, 282, 366, 699, 1010
BseGI GGATG 3 cut(s) 10, 709, 931
BseLI CCNNNNNNNGG 1 cut(s) 755
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 3 cut(s) 105, 278, 303
BseRI GAGGAG 2 cut(s) 329, 332
BseXI GCAGC 2 cut(s) 469, 812
BsgI GTGCAG 1 cut(s) 515
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 344, 606
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 1010
BsiSI CCGG 3 cut(s) 423, 960, 1011
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 755
BsmAI GTCTC 3 cut(s) 73, 258, 265
BsmBI CGTCTC 3 cut(s) 73, 258, 265
BsmFI GGGAC 1 cut(s) 264
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 2 cut(s) 344, 606
BsoBI CYCGRG 1 cut(s) 1010
Bsp119I TTCGAA 2 cut(s) 437, 885
Bsp1286I GDGCHC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 422
Bsp143I GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 2 cut(s) 412, 912
BspANI GGCC 2 cut(s) 344, 606
BspCNI CTCAG 3 cut(s) 104, 277, 304
BspEI TCCGGA 1 cut(s) 422
BspFNI CGCG 1 cut(s) 258
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 670
BspPI GGATC 7 cut(s) 94, 198, 211, 242, 797, 873, 1011
BspT104I TTCGAA 2 cut(s) 437, 885
BsrDI GCAATG 1 cut(s) 525
BsrFI RCCGGY 1 cut(s) 959
BssAI RCCGGY 1 cut(s) 959
BssECI CCNNGG 5 cut(s) 281, 282, 366, 699, 1010
BssMI GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
BssNAI GTATAC 1 cut(s) 985
BssT1I CCWWGG 2 cut(s) 366, 699
Bst1107I GTATAC 1 cut(s) 985
Bst2UI CCWGG 1 cut(s) 283
Bst4CI ACNGT 5 cut(s) 611, 622, 664, 691, 812
Bst6I CTCTTC 3 cut(s) 56, 215, 1019
BstAPI GCANNNNNTGC 1 cut(s) 529
BstBI TTCGAA 2 cut(s) 437, 885
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 4 cut(s) 91, 264, 312, 1047
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 3 cut(s) 10, 709, 931
BstFNI CGCG 1 cut(s) 258
BstHHI GCGC 1 cut(s) 679
BstKTI GATC 8 cut(s) 102, 206, 213, 250, 328, 805, 881, 1006
BstMAI GTCTC 3 cut(s) 73, 258, 265
BstMBI GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
BstMWI GCNNNNNNNGC 2 cut(s) 529, 918
BstNI CCWGG 1 cut(s) 283
BstSCI CCNGG 3 cut(s) 281, 1009, 1010
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 469, 812
BstV2I GAAGAC 1 cut(s) 773
BstX2I RGATCY 3 cut(s) 203, 878, 1003
BstYI RGATCY 3 cut(s) 203, 878, 1003
BstZ17I GTATAC 1 cut(s) 985
BsuRI GGCC 2 cut(s) 344, 606
BtgI CCRYGG 1 cut(s) 366
BtrI CACGTC 2 cut(s) 67, 97
BtsCI GGATG 3 cut(s) 10, 709, 931
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 202, 618
BveI ACCTGC 1 cut(s) 670
Cac8I GCNNGC 1 cut(s) 10
CaiI CAGNNNCTG 1 cut(s) 529
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 679
Cfr10I RCCGGY 1 cut(s) 959
Cfr13I GGNCC 2 cut(s) 227, 489
Cfr9I CCCGGG 1 cut(s) 1010
CseI GACGC 1 cut(s) 247
DdeI CTNAG 4 cut(s) 91, 264, 312, 1047
DpnI GATC 8 cut(s) 101, 205, 212, 249, 327, 804, 880, 1005
DpnII GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
EaeI YGGCCR 2 cut(s) 342, 604
Eam1104I CTCTTC 3 cut(s) 56, 215, 1019
EarI CTCTTC 3 cut(s) 56, 215, 1019
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 366, 699
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 227, 489
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 760
Eco88I CYCGRG 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 366, 699
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 366, 699
Esp3I CGTCTC 3 cut(s) 73, 258, 265
FaqI GGGAC 1 cut(s) 264
FauI CCCGC 1 cut(s) 905
FbaI TGATCA 2 cut(s) 210, 325
FblI GTMKAC 1 cut(s) 984
Fnu4HI GCNGC 2 cut(s) 483, 826
FokI GGATG 3 cut(s) 17, 716, 938
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 483, 826
FspBI CTAG 2 cut(s) 356, 909
FspI TGCGCA 1 cut(s) 678
GlaI GCGC 1 cut(s) 678
GluI GCNGC 2 cut(s) 483, 826
HaeIII GGCC 2 cut(s) 344, 606
HapII CCGG 3 cut(s) 423, 960, 1011
HgaI GACGC 1 cut(s) 247
HhaI GCGC 1 cut(s) 679
Hin6I GCGC 1 cut(s) 677
HinP1I GCGC 1 cut(s) 677
HincII GTYRAC 1 cut(s) 646
HindII GTYRAC 1 cut(s) 646
HinfI GANTC 6 cut(s) 87, 277, 383, 470, 868, 976
HpaII CCGG 3 cut(s) 423, 960, 1011
HphI GGTGA 4 cut(s) 694, 770, 854, 974
Hpy166II GTNNAC 2 cut(s) 646, 985
Hpy188I TCNGA 5 cut(s) 94, 215, 313, 718, 1000
Hpy188III TCNNGA 6 cut(s) 78, 155, 423, 446, 578, 593
Hpy8I GTNNAC 2 cut(s) 646, 985
HpyAV CCTTC 4 cut(s) 240, 502, 506, 892
HpyCH4III ACNGT 5 cut(s) 611, 622, 664, 691, 812
HpyCH4IV ACGT 3 cut(s) 66, 96, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 529, 918
HpyF3I CTNAG 4 cut(s) 91, 264, 312, 1047
HpySE526I ACGT 3 cut(s) 66, 96, 116
HspAI GCGC 1 cut(s) 677
Kpn2I TCCGGA 1 cut(s) 422
Ksp22I TGATCA 2 cut(s) 210, 325
Kzo9I GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
LmnI GCTCC 2 cut(s) 425, 822
Lsp1109I GCAGC 2 cut(s) 469, 812
LweI GCATC 1 cut(s) 751
MaeI CTAG 2 cut(s) 356, 909
MaeII ACGT 3 cut(s) 66, 96, 116
MalI GATC 8 cut(s) 101, 205, 212, 249, 327, 804, 880, 1005
MboI GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 3 cut(s) 203, 878, 1003
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 2 cut(s) 344, 606
MluCI AATT 7 cut(s) 127, 158, 166, 301, 333, 501, 596
MluNI TGGCCA 2 cut(s) 344, 606
MlyI GAGTC 3 cut(s) 286, 377, 479
MmeI TCCRAC 1 cut(s) 486
Mox20I TGGCCA 2 cut(s) 344, 606
MroI TCCGGA 1 cut(s) 422
MroXI GAANNNNTTC 1 cut(s) 749
MscI TGGCCA 2 cut(s) 344, 606
MseI TTAA 3 cut(s) 150, 162, 336
Msp20I TGGCCA 2 cut(s) 344, 606
MspI CCGG 3 cut(s) 423, 960, 1011
MspR9I CCNGG 3 cut(s) 283, 1011, 1012
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 283
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 2 cut(s) 529, 918
NciI CCSGG 2 cut(s) 1011, 1012
NcoI CCATGG 1 cut(s) 366
NdeII GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
NlaIV GGNNCC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 678
NspV TTCGAA 2 cut(s) 437, 885
PagI TCATGA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 670
PasI CCCWGGG 1 cut(s) 282
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 749
PfeI GAWTC 3 cut(s) 87, 868, 976
PkrI GCNGC 2 cut(s) 484, 827
PleI GAGTC 3 cut(s) 285, 377, 478
PpsI GAGTC 3 cut(s) 285, 377, 478
PpuMI RGGWCCY 1 cut(s) 227
PshBI ATTAAT 1 cut(s) 336
PsiI TTATAA 1 cut(s) 297
Psp124BI GAGCTC 1 cut(s) 85
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 281
PspGI CCWGG 1 cut(s) 281
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 227, 489
PspPPI RGGWCCY 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 3 cut(s) 203, 878, 1003
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 150, 162, 336
SatI GCNGC 2 cut(s) 483, 826
Sau3AI GATC 8 cut(s) 99, 203, 210, 247, 325, 802, 878, 1003
Sau96I GGNCC 2 cut(s) 227, 489
SchI GAGTC 3 cut(s) 286, 377, 479
ScrFI CCNGG 3 cut(s) 283, 1011, 1012
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 1 cut(s) 751
SfuI TTCGAA 2 cut(s) 437, 885
SinI GGWCC 2 cut(s) 227, 489
SmaI CCCGGG 1 cut(s) 1012
SmlI CTYRAG 1 cut(s) 444
SmoI CTYRAG 1 cut(s) 444
Sse9I AATT 7 cut(s) 127, 158, 166, 301, 333, 501, 596
SsiI CCGC 2 cut(s) 412, 912
SspMI CTAG 2 cut(s) 356, 909
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 3 cut(s) 281, 1009, 1010
StyI CCWWGG 2 cut(s) 366, 699
TaaI ACNGT 5 cut(s) 611, 622, 664, 691, 812
TaiI ACGT 3 cut(s) 69, 99, 119
TaqI TCGA 6 cut(s) 85, 246, 437, 473, 567, 885
TasI AATT 7 cut(s) 127, 158, 166, 301, 333, 501, 596
TfiI GAWTC 3 cut(s) 87, 868, 976
Tru1I TTAA 3 cut(s) 150, 162, 336
Tru9I TTAA 3 cut(s) 150, 162, 336
TscAI CASTG 2 cut(s) 202, 625
TseI GCWGC 2 cut(s) 482, 825
TspDTI ATGAA 7 cut(s) 120, 233, 465, 552, 566, 860, 1032
TspGWI ACGGA 2 cut(s) 240, 730
TspMI CCCGGG 1 cut(s) 1010
TspRI CASTG 2 cut(s) 202, 625
VpaK11BI GGWCC 2 cut(s) 227, 489
VspI ATTAAT 1 cut(s) 336
XapI RAATTY 3 cut(s) 127, 158, 301
XmaI CCCGGG 1 cut(s) 1010
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 1 cut(s) 749
XspI CTAG 2 cut(s) 356, 909
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.