Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Reverse (-)

10851718 .. 10852080

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28853.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCAGACAATATCGATTTGGAGTTGAGTTTACAAACAAATCACTCTATGATCATAAACAAAAGACTAACCCAATCTGATGTCGATTATAATAATAGGCTTCATCTACCAAAAAGAGAGTTTGAACAATTTATACTTCCGGAAATGGAATGGGAATTAGTCATGAATTTGAGAAACAGTGTCGAAGTGATAGTTAAAGATGTGAATGGGAATGAATACCATGTAACGCTAGTAAAATACCAAAATGGTCATTATTATTTCATGGGAAAATGGATGGATATCGTGAGAGCAAAAGGTTACAAAAGGGACGATGAAATTTCACTTTTGTGGGATAAGAGTAATGAAGTTTTCTATATTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

120

Amino Acids

14.46

Weight (kDa)

5.3

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	21 - 115	1.4e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	166, 315
AgsI	TTSAA	1 cut(s)	125
AleI	CACNNNNGTG	1 cut(s)	325
Aor13HI	TCCGGA	1 cut(s)	139
ApoI	RAATTY	2 cut(s)	166, 315
BccI	CCATC	1 cut(s)	268
BclI	TGATCA	1 cut(s)	51
BfaI	CTAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	15
BsaBI	GATNNNNATC	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	139
Bse8I	GATNNNNATC	1 cut(s)	278
BseAI	TCCGGA	1 cut(s)	139
BseCI	ATCGAT	1 cut(s)	15
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	320
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	51
BspDI	ATCGAT	1 cut(s)	15
BspEI	TCCGGA	1 cut(s)	139
BspHI	TCATGA	1 cut(s)	162
BssMI	GATC	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	179
BstF5I	GGATG	1 cut(s)	279
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
Bsu15I	ATCGAT	1 cut(s)	15
BsuTUI	ATCGAT	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	279
BtsIMutI	CAGTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	162
ClaI	ATCGAT	1 cut(s)	15
CviAII	CATG	3 cut(s)	163, 221, 262
CviJI	RGCY	1 cut(s)	100
CviKI_1	RGCY	1 cut(s)	100
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco32I	GATATC	1 cut(s)	280
EcoRV	GATATC	1 cut(s)	280
FaeI	CATG	3 cut(s)	166, 224, 265
FaiI	YATR	8 cut(s)	50, 56, 90, 134, 164, 222, 263, 354
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	3 cut(s)	162, 220, 261
FbaI	TGATCA	1 cut(s)	51
FokI	GGATG	1 cut(s)	286
FspBI	CTAG	1 cut(s)	230
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	3 cut(s)	166, 224, 265
HpaII	CCGG	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	140, 163, 283
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4III	ACNGT	1 cut(s)	179
Hsp92II	CATG	3 cut(s)	166, 224, 265
Kpn2I	TCCGGA	1 cut(s)	139
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	1 cut(s)	153
MaeI	CTAG	1 cut(s)	230
MaeIII	GTNAC	2 cut(s)	223, 296
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MluCI	AATT	4 cut(s)	128, 155, 166, 315
MroI	TCCGGA	1 cut(s)	139
MseI	TTAA	2 cut(s)	195, 361
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	1 cut(s)	140
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	166, 224, 265
OliI	CACNNNNGTG	1 cut(s)	325
PagI	TCATGA	1 cut(s)	162
PsiI	TTATAA	1 cut(s)	90
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
RseI	CAYNNNNRTG	1 cut(s)	325
SaqAI	TTAA	2 cut(s)	195, 361
Sau3AI	GATC	1 cut(s)	51
SetI	ASST	1 cut(s)	298
SgeI	CNNG	6 cut(s)	152, 175, 233, 242, 274, 295
SmiMI	CAYNNNNRTG	1 cut(s)	325
Sse9I	AATT	4 cut(s)	128, 155, 166, 315
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	3 cut(s)	15, 84, 183
TasI	AATT	4 cut(s)	128, 155, 166, 315
Tru1I	TTAA	2 cut(s)	195, 361
Tru9I	TTAA	2 cut(s)	195, 361
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	6 cut(s)	92, 179, 228, 250, 327, 357
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	2 cut(s)	166, 315
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.