Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

82462746 .. 82464049

Gene Structure 1304 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG580800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGATGGAGGAACCCTTGAAAACCCTCAATCTCATTGACAAGTTAACTGGAGGTGAATTGCGCTGCCCATCAATTGCTAGTTGTAGTAGTAATAGTAGTACCGATCCATTGGAACACCACCGACTACTTTGTCTTGCAGCTTCTTCTTTCACTCTGGATCATTCTTGGTGGCAGTTCCTGCCCTCCACCACAAAGAAGAGAAAAGGAAAAGAACTAGTACCGGTGGAGGAAGAGTCAGCAGCACCTATGAATCATCCCAAACGTCGAAAACTAGTACTGAATGATCACCAGAATAATAGAGAGCTGAAAAAAAGAAGTGCCTTGGAAAATAAAGATAATGACAACGAGAGCTGTCTTGGTCTTACTTTGGGGGTTTCTCCGGTGTCAACCACCCAGGCGGTTCATGATAATCAGTTGAAGGAGATGAGAGAAAACCGAGTAGCCGAACGTGATGACGACGAAAGCATTCTTAGGCTTACTGCTGGTCCTAGTGATCATCATCATCATCATCATCAAAGGCCGGTGGTGCGCCGTAGTGACCCGGCCATGTTCAACATCAAGAAGAAGCTAACGCCAAGCGACCTCGGACACCTGAGCAGGCTCTTGCTGCCAAAAGATATGGTCAAAAGCCATATTTTGCCTAATTTTGATGAAGACCTGGTAGGAAGGATGGAGAGTGAAGTGGGTTTGGAAGTTACTGTGTTCGACGAGGATCGGCAAAAGGAGTATGAGTTGATATTCAAATACTTGAAATCGTCGAGAAGTTACGTTTTCAACGGAAAGTGGACACATGACTTTGTGAAGTTGTTAAATCTCAACAAGGATGATGAGATCGGACTTTACTTGGATACTATTCCATCTCCAAAACCCAAGTTTCACTTTTCACTCTTGAAACTCGCAGGCCAAGCTGACGGGTGCTCCTGCTCTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

311

Amino Acids

35.42

Weight (kDa)

6.76

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	3 cut(s)	98, 165, 720
AcoI	YGGCCR	1 cut(s)	543
AfaI	GTAC	3 cut(s)	100, 219, 276
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	8 cut(s)	19, 418, 553, 742, 751, 775, 892, 930
AhlI	ACTAGT	2 cut(s)	214, 271
AjnI	CCWGG	2 cut(s)	393, 657
AluBI	AGCT	5 cut(s)	140, 304, 351, 568, 908
AluI	AGCT	5 cut(s)	140, 304, 351, 568, 908
Alw21I	GWGCWC	1 cut(s)	920
AlwI	GGATC	3 cut(s)	98, 165, 720
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	3 cut(s)	518, 543, 901
ApeKI	GCWGC	4 cut(s)	63, 137, 239, 607
AsiGI	ACCGGT	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	63, 531
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	2 cut(s)	65, 278
AvaII	GGWCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	920
BbvI	GCAGC	4 cut(s)	50, 149, 251, 594
BccI	CCATC	3 cut(s)	76, 664, 865
BceAI	ACGGC	1 cut(s)	516
BciT130I	CCWGG	2 cut(s)	395, 659
BciVI	GTATCC	1 cut(s)	841
BclI	TGATCA	2 cut(s)	283, 493
BcnI	CCSGG	1 cut(s)	542
BcuI	ACTAGT	2 cut(s)	214, 271
BfaI	CTAG	4 cut(s)	78, 215, 272, 489
BfuI	GTATCC	1 cut(s)	841
BisI	GCNGC	4 cut(s)	64, 138, 240, 608
BlsI	GCNGC	4 cut(s)	65, 139, 241, 609
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	3 cut(s)	395, 542, 659
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	3 cut(s)	395, 542, 659
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	593
BpuMI	CCSGG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	3 cut(s)	321, 393, 583
BsaWI	WCCGGW	2 cut(s)	220, 379
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 716, 746, 902, 932
Bse118I	RCCGGY	2 cut(s)	220, 520
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	395, 659
BseDI	CCNNGG	3 cut(s)	321, 393, 583
BseGI	GGATG	3 cut(s)	253, 675, 829
BseJI	GATNNNNATC	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	584
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	50, 149, 251, 594
BshFI	GGCC	3 cut(s)	520, 545, 903
BshTI	ACCGGT	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	920
BsiSI	CCGG	4 cut(s)	221, 380, 521, 542
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	520, 545, 903
Bsp1286I	GDGCHC	1 cut(s)	920
Bsp143I	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	3 cut(s)	520, 545, 903
BspCNI	CTCAG	1 cut(s)	585
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	98, 165, 720
BspQI	GCTCTTC	1 cut(s)	931
BsrFI	RCCGGY	2 cut(s)	220, 520
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	2 cut(s)	220, 520
BssECI	CCNNGG	3 cut(s)	321, 393, 583
BssMI	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	395, 659
Bst4CI	ACNGT	1 cut(s)	700
Bst6I	CTCTTC	3 cut(s)	191, 225, 931
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	599, 901
BstDEI	CTNAG	2 cut(s)	470, 593
BstF5I	GGATG	3 cut(s)	253, 675, 829
BstHHI	GCGC	2 cut(s)	63, 531
BstKTI	GATC	6 cut(s)	106, 160, 286, 496, 715, 834
BstMBI	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 526, 607, 905
BstNI	CCWGG	2 cut(s)	395, 659
BstSCI	CCNGG	3 cut(s)	393, 540, 657
BstV1I	GCAGC	4 cut(s)	50, 149, 251, 594
BstV2I	GAAGAC	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	841
BsuRI	GGCC	3 cut(s)	520, 545, 903
BtsCI	GGATG	3 cut(s)	253, 675, 829
Cac8I	GCNNGC	2 cut(s)	599, 901
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	2 cut(s)	63, 531
Cfr10I	RCCGGY	2 cut(s)	220, 520
Cfr13I	GGNCC	1 cut(s)	485
CsiI	ACCWGGT	1 cut(s)	657
Csp6I	GTAC	3 cut(s)	99, 218, 275
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	4 cut(s)	404, 547, 791, 933
CviQI	GTAC	3 cut(s)	99, 218, 275
DdeI	CTNAG	2 cut(s)	470, 593
DpnI	GATC	6 cut(s)	105, 159, 285, 495, 714, 833
DpnII	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	543
Eam1104I	CTCTTC	3 cut(s)	191, 225, 931
EarI	CTCTTC	3 cut(s)	191, 225, 931
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	393, 657
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	4 cut(s)	407, 550, 794, 936
FaiI	YATR	8 cut(s)	248, 405, 548, 620, 633, 729, 792, 934
FalI	AAGNNNNNCTT	2 cut(s)	863, 895
FatI	CATG	4 cut(s)	403, 546, 790, 932
FbaI	TGATCA	2 cut(s)	283, 493
Fnu4HI	GCNGC	4 cut(s)	64, 138, 240, 608
FokI	GGATG	3 cut(s)	240, 682, 836
Fsp4HI	GCNGC	4 cut(s)	64, 138, 240, 608
FspBI	CTAG	4 cut(s)	78, 215, 272, 489
GlaI	GCGC	2 cut(s)	62, 530
GluI	GCNGC	4 cut(s)	64, 138, 240, 608
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	520, 545, 903
HapII	CCGG	4 cut(s)	221, 380, 521, 542
HhaI	GCGC	2 cut(s)	63, 531
Hin1II	CATG	4 cut(s)	407, 550, 794, 936
Hin6I	GCGC	2 cut(s)	61, 529
HinP1I	GCGC	2 cut(s)	61, 529
HincII	GTYRAC	2 cut(s)	45, 387
HindII	GTYRAC	2 cut(s)	45, 387
HinfI	GANTC	2 cut(s)	233, 250
HpaI	GTTAAC	1 cut(s)	45
HpaII	CCGG	4 cut(s)	221, 380, 521, 542
HphI	GGTGA	2 cut(s)	65, 278
Hpy166II	GTNNAC	3 cut(s)	45, 387, 786
Hpy188I	TCNGA	2 cut(s)	587, 836
Hpy188III	TCNNGA	5 cut(s)	155, 404, 559, 759, 889
Hpy8I	GTNNAC	3 cut(s)	45, 387, 786
Hpy99I	CGWCG	4 cut(s)	267, 461, 710, 760
HpyAV	CCTTC	2 cut(s)	412, 660
HpyCH4III	ACNGT	1 cut(s)	700
HpyCH4IV	ACGT	3 cut(s)	262, 448, 768
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 526, 607, 905
HpyF3I	CTNAG	2 cut(s)	470, 593
HpySE526I	ACGT	3 cut(s)	262, 448, 768
Hsp92II	CATG	4 cut(s)	407, 550, 794, 936
HspAI	GCGC	2 cut(s)	61, 529
Ksp22I	TGATCA	2 cut(s)	283, 493
KspAI	GTTAAC	1 cut(s)	45
Kzo9I	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
LguI	GCTCTTC	1 cut(s)	931
LmnI	GCTCC	1 cut(s)	923
Lsp1109I	GCAGC	4 cut(s)	50, 149, 251, 594
MabI	ACCWGGT	1 cut(s)	657
MaeI	CTAG	4 cut(s)	78, 215, 272, 489
MaeII	ACGT	3 cut(s)	262, 448, 768
MaeIII	GTNAC	3 cut(s)	536, 694, 764
MalI	GATC	6 cut(s)	105, 159, 285, 495, 714, 833
MboI	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
MboII	GAAGA	6 cut(s)	135, 208, 242, 574, 665, 918
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	920
MluCI	AATT	3 cut(s)	56, 72, 643
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	35, 44, 193, 220, 593, 703
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	2 cut(s)	44, 809
MspI	CCGG	4 cut(s)	221, 380, 521, 542
MspR9I	CCNGG	3 cut(s)	395, 542, 659
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	395, 659
MwoI	GCNNNNNNNGC	4 cut(s)	178, 526, 607, 905
NciI	CCSGG	1 cut(s)	542
NdeII	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
NlaIII	CATG	4 cut(s)	407, 550, 794, 936
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	536
PagI	TCATGA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	931
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	250
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	65, 139, 241, 609
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp6I	CCWGG	2 cut(s)	393, 657
PspGI	CCWGG	2 cut(s)	393, 657
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	100, 219, 276
RsaNI	GTAC	3 cut(s)	99, 218, 275
SapI	GCTCTTC	1 cut(s)	931
SaqAI	TTAA	2 cut(s)	44, 809
SatI	GCNGC	4 cut(s)	64, 138, 240, 608
Sau3AI	GATC	6 cut(s)	103, 157, 283, 493, 712, 831
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	3 cut(s)	395, 542, 659
SduI	GDGCHC	1 cut(s)	920
SexAI	ACCWGGT	1 cut(s)	657
SinI	GGWCC	1 cut(s)	485
SpeI	ACTAGT	2 cut(s)	214, 271
Sse9I	AATT	3 cut(s)	56, 72, 643
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	4 cut(s)	78, 215, 272, 489
StyD4I	CCNGG	3 cut(s)	393, 540, 657
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	700
TaiI	ACGT	3 cut(s)	265, 451, 771
TaqI	TCGA	3 cut(s)	265, 705, 758
TasI	AATT	3 cut(s)	56, 72, 643
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	2 cut(s)	44, 809
Tru9I	TTAA	2 cut(s)	44, 809
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	4 cut(s)	63, 137, 239, 607
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	3 cut(s)	263, 392, 666
TspGWI	ACGGA	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	4 cut(s)	78, 215, 272, 489
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.