Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

87392307 .. 87393239

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036996

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGAGGAACCCTTGAAAACCCTCAATCTCATTGACAAGTTAACTGGAGCTTCTTCTCTCACTCTGGATCAATCTTGGTGGCAGCCCCTGCCCTCCACCACAAAGAAGAGAAAAGGAAAAGAACTAGTACCGGTGGAGGAAGAGTCAGCAGCACCTATGAATCATCCCAAACGTCGAAAACTAGTACTGAATGATCACCAGAATAATAGAGAGCTGAATAAAAGAAGTGCCTTGGAAAATAAAGATAATGACAACGAGAGCTGTCTTGGTCTTACTTTGGGGGTTTCTCCGGTGTCAACCACCCGGCCGGTTCATGATGATCAGTTGAAGGAGATAAGAGAAATCCGAGTAGCCGAACGTCATGATGACGAAAGCATTCTTAGGCTTACTGTTGGTCCTAGTGATCATCATCATCATCAAAGGCCGGTGGTGCGCCGTAGTGACCCGGCCATATTCAACATCAAGAAGAAGTTAACGCCAAGCGACCTCGGACACCTGAGCAGGCTCTTGCTGCCAAAAGATATGGTCAAAAGCCATATTTTGCCTAATTTTGATGAAGACTTGGTAGGAAGGATGGAGAGTGAAGTGGGTTTGGAAGTTACTGTGTTCGACGAGGATCGGCAAAAGGAGTATGAGTTGATATTCAAATACTTGAAATCGTCGAGAAGTTACGTTTTCAACGGAAAGTGGACACATGACTTTGTGAAGTTGTTAAATCTCAACAAGGATGATGAGATCGGACTTTACTTGGATACTACTCCATCTCCAAAACCCAAGTTCCACTTTTCACTCTTGAAACTCGCAGGCCAAGCTGACGAGGGTGCTCCTGCTCTTCAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

282

Amino Acids

32.18

Weight (kDa)

6.47

Isoelectric Point (pI)

56.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	75, 624
AcoI	YGGCCR	2 cut(s)	305, 447
AfaI	GTAC	2 cut(s)	129, 186
AgeI	ACCGGT	1 cut(s)	130
AgsI	TTSAA	8 cut(s)	16, 328, 457, 646, 655, 679, 796, 836
AhlI	ACTAGT	2 cut(s)	124, 181
AluBI	AGCT	4 cut(s)	50, 214, 261, 812
AluI	AGCT	4 cut(s)	50, 214, 261, 812
Alw21I	GWGCWC	1 cut(s)	826
AlwI	GGATC	2 cut(s)	75, 624
AlwNI	CAGNNNCTG	1 cut(s)	88
AoxI	GGCC	4 cut(s)	305, 422, 447, 805
ApeKI	GCWGC	3 cut(s)	82, 149, 511
AsiGI	ACCGGT	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	375
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	395
AsuC2I	CCSGG	2 cut(s)	304, 446
AsuHPI	GGTGA	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	94, 161, 498
BccI	CCATC	2 cut(s)	568, 769
BceAI	ACGGC	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	3 cut(s)	193, 319, 403
BcnI	CCSGG	2 cut(s)	304, 446
BcuI	ACTAGT	2 cut(s)	124, 181
BfaI	CTAG	3 cut(s)	125, 182, 399
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	3 cut(s)	83, 150, 512
BlsI	GCNGC	3 cut(s)	84, 151, 513
BmcAI	AGTACT	1 cut(s)	186
Bme1390I	CCNGG	2 cut(s)	304, 446
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	304, 446
BpiI	GAAGAC	1 cut(s)	564
BpmI	CTGGAG	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	497
BpuMI	CCSGG	2 cut(s)	304, 446
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	231, 487
BsaWI	WCCGGW	2 cut(s)	130, 289
BsaXI	ACNNNNNCTCC	6 cut(s)	128, 158, 620, 650, 748, 778
Bse118I	RCCGGY	3 cut(s)	130, 307, 424
Bse1I	ACTGG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	231, 487
BseGI	GGATG	3 cut(s)	163, 579, 733
BseJI	GATNNNNATC	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	1 cut(s)	49
BseX3I	CGGCCG	1 cut(s)	305
BseXI	GCAGC	3 cut(s)	94, 161, 498
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	4 cut(s)	307, 424, 449, 807
BshTI	ACCGGT	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	308
BsiHKAI	GWGCWC	1 cut(s)	826
BsiSI	CCGG	6 cut(s)	131, 290, 304, 308, 425, 446
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	4 cut(s)	307, 424, 449, 807
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp143I	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
BspANI	GGCC	4 cut(s)	307, 424, 449, 807
BspCNI	CTCAG	1 cut(s)	489
BspHI	TCATGA	2 cut(s)	313, 361
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	75, 624
BspQI	GCTCTTC	1 cut(s)	837
BsrFI	RCCGGY	3 cut(s)	130, 307, 424
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	3 cut(s)	130, 307, 424
BssECI	CCNNGG	2 cut(s)	231, 487
BssMI	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
BssT1I	CCWWGG	1 cut(s)	231
Bst4CI	ACNGT	2 cut(s)	391, 604
Bst6I	CTCTTC	3 cut(s)	101, 135, 837
BstAPI	GCANNNNNTGC	1 cut(s)	88
BstC8I	GCNNGC	2 cut(s)	503, 805
BstDEI	CTNAG	2 cut(s)	380, 497
BstF5I	GGATG	3 cut(s)	163, 579, 733
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	6 cut(s)	70, 196, 322, 406, 619, 738
BstMBI	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	4 cut(s)	88, 430, 511, 809
BstSCI	CCNGG	2 cut(s)	302, 444
BstV1I	GCAGC	3 cut(s)	94, 161, 498
BstV2I	GAAGAC	1 cut(s)	564
BstZI	CGGCCG	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	307, 424, 449, 807
BtsCI	GGATG	3 cut(s)	163, 579, 733
Cac8I	GCNNGC	2 cut(s)	503, 805
CaiI	CAGNNNCTG	1 cut(s)	88
CciI	TCATGA	2 cut(s)	313, 361
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	3 cut(s)	130, 307, 424
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	2 cut(s)	128, 185
CspAI	ACCGGT	1 cut(s)	130
CspCI	CAANNNNNGTGG	2 cut(s)	59, 94
CviAII	CATG	3 cut(s)	314, 362, 695
CviQI	GTAC	2 cut(s)	128, 185
DdeI	CTNAG	2 cut(s)	380, 497
DpnI	GATC	6 cut(s)	69, 195, 321, 405, 618, 737
DpnII	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
EaeI	YGGCCR	2 cut(s)	305, 447
EagI	CGGCCG	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	101, 135, 837
EarI	CTCTTC	3 cut(s)	101, 135, 837
EclXI	CGGCCG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	395
Eco52I	CGGCCG	1 cut(s)	305
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	317, 365, 698
FaiI	YATR	8 cut(s)	158, 315, 363, 452, 524, 537, 633, 696
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	3 cut(s)	313, 361, 694
FbaI	TGATCA	3 cut(s)	193, 319, 403
Fnu4HI	GCNGC	3 cut(s)	83, 150, 512
FokI	GGATG	3 cut(s)	150, 586, 740
Fsp4HI	GCNGC	3 cut(s)	83, 150, 512
FspBI	CTAG	3 cut(s)	125, 182, 399
GlaI	GCGC	1 cut(s)	434
GluI	GCNGC	3 cut(s)	83, 150, 512
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	4 cut(s)	307, 424, 449, 807
HapII	CCGG	6 cut(s)	131, 290, 304, 308, 425, 446
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	3 cut(s)	317, 365, 698
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HincII	GTYRAC	3 cut(s)	42, 297, 474
HindII	GTYRAC	3 cut(s)	42, 297, 474
HinfI	GANTC	2 cut(s)	143, 160
HpaI	GTTAAC	2 cut(s)	42, 474
HpaII	CCGG	6 cut(s)	131, 290, 304, 308, 425, 446
HphI	GGTGA	1 cut(s)	188
Hpy166II	GTNNAC	4 cut(s)	42, 297, 474, 690
Hpy188I	TCNGA	3 cut(s)	347, 491, 740
Hpy188III	TCNNGA	6 cut(s)	65, 314, 362, 463, 663, 793
Hpy8I	GTNNAC	4 cut(s)	42, 297, 474, 690
Hpy99I	CGWCG	3 cut(s)	177, 614, 664
HpyAV	CCTTC	2 cut(s)	322, 564
HpyCH4III	ACNGT	2 cut(s)	391, 604
HpyCH4IV	ACGT	3 cut(s)	172, 358, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	88, 430, 511, 809
HpyF3I	CTNAG	2 cut(s)	380, 497
HpySE526I	ACGT	3 cut(s)	172, 358, 672
Hsp92II	CATG	3 cut(s)	317, 365, 698
HspAI	GCGC	1 cut(s)	433
Ksp22I	TGATCA	3 cut(s)	193, 319, 403
KspAI	GTTAAC	2 cut(s)	42, 474
Kzo9I	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
LguI	GCTCTTC	1 cut(s)	837
LmnI	GCTCC	2 cut(s)	47, 829
Lsp1109I	GCAGC	3 cut(s)	94, 161, 498
MaeI	CTAG	3 cut(s)	125, 182, 399
MaeII	ACGT	3 cut(s)	172, 358, 672
MaeIII	GTNAC	3 cut(s)	440, 598, 668
MalI	GATC	6 cut(s)	69, 195, 321, 405, 618, 737
MboI	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
MboII	GAAGA	6 cut(s)	45, 118, 152, 478, 569, 824
MhlI	GDGCHC	1 cut(s)	826
MluCI	AATT	1 cut(s)	547
MlyI	GAGTC	1 cut(s)	152
MnlI	CCTC	6 cut(s)	32, 103, 130, 497, 607, 811
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	3 cut(s)	41, 473, 713
MspI	CCGG	6 cut(s)	131, 290, 304, 308, 425, 446
MspR9I	CCNGG	2 cut(s)	304, 446
Mva1269I	GAATGC	1 cut(s)	375
MwoI	GCNNNNNNNGC	4 cut(s)	88, 430, 511, 809
NciI	CCSGG	2 cut(s)	304, 446
NdeII	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
NlaIII	CATG	3 cut(s)	317, 365, 698
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	440
PagI	TCATGA	2 cut(s)	313, 361
PciSI	GCTCTTC	1 cut(s)	837
PctI	GAATGC	1 cut(s)	375
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	160
PinAI	ACCGGT	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	84, 151, 513
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	88
RsaI	GTAC	2 cut(s)	129, 186
RsaNI	GTAC	2 cut(s)	128, 185
SapI	GCTCTTC	1 cut(s)	837
SaqAI	TTAA	3 cut(s)	41, 473, 713
SatI	GCNGC	3 cut(s)	83, 150, 512
Sau3AI	GATC	6 cut(s)	67, 193, 319, 403, 616, 735
Sau96I	GGNCC	1 cut(s)	395
ScaI	AGTACT	1 cut(s)	186
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	304, 446
SduI	GDGCHC	1 cut(s)	826
SinI	GGWCC	1 cut(s)	395
SpeI	ACTAGT	2 cut(s)	124, 181
Sse9I	AATT	1 cut(s)	547
SspMI	CTAG	3 cut(s)	125, 182, 399
StyD4I	CCNGG	2 cut(s)	302, 444
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	2 cut(s)	391, 604
TaiI	ACGT	3 cut(s)	175, 361, 675
TaqI	TCGA	3 cut(s)	175, 609, 662
TasI	AATT	1 cut(s)	547
TatI	WGTACW	1 cut(s)	184
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	41, 473, 713
Tru9I	TTAA	3 cut(s)	41, 473, 713
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	3 cut(s)	82, 149, 511
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	3 cut(s)	173, 302, 570
TspGWI	ACGGA	1 cut(s)	696
VpaK11BI	GGWCC	1 cut(s)	395
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	3 cut(s)	125, 182, 399
ZrmI	AGTACT	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.