Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

10835504 .. 10836268

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G100300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAACGGGAAGCAAAAGCTTTTCCTTATGATAAACCCAAAGCTGTACTCTTCCACAAGTCAGTGAAGTCACCTCAACGTCCTACCCATATCACCATGAATATCACCAGAAACACTATGCCTCATAAGCTTTTGGATTCTCTCCAAGGCCAAGATCCAAAAACCTACTGCATTTTCCACTCTCTCTTTCAAGTTTCCAGAATGGAAGAAGAGAAACCCTCAACAGAGCTAACCCTAGCCGCTACTTCCAGTGCACCTCAGTCTCAGTGCCCACCGGAAGATATAGTTTGGACAACTTTGACTTTGGGGCTTCCATCTTCAACCTCCGAGAAGAGAGAAGCAGTGGATCAAAACCCTGCTCCTTCCATGAAAAAGGGCCCTTGGGAGATCAAGAAGAGGTTGACCACAAGCGACCTTGGAAACCGGTGCAAGCTTTTGGCCAGAAGTTTGGAGAAACATGTTATGCCCTGCTTGGATGAGGAGTTTGGACAAAGGGTTTCGAGCAGAGAGGGTGCAAGGGTTATAGTTTACGATTGCGATACAAATTCCAACCATCAACTGATTCTCAAGTATTACAAGAGCTCCGACAGTTATGTTTTCGGTAGAAAGTGGGGGAAGTTTGTGAGGAGAAGAGACTTGAACATGGGTGACGAAATTGGGCTCAGCTGGGATGTTCTCAACTCCAGGTTCTTGTTTTCGGTTCTTCAACGGGCAAACCAACAACCTGCTAGCTCTTCATCGAATTCAAGAACGAAGCATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

28.99

Weight (kDa)

9.6

Isoelectric Point (pI)

63.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	733
AciI	CCGC	1 cut(s)	240
AclWI	GGATC	2 cut(s)	149, 354
AcoI	YGGCCR	1 cut(s)	438
AcsI	RAATTY	2 cut(s)	544, 742
AfaI	GTAC	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	457
AgeI	ACCGGT	1 cut(s)	423
AgsI	TTSAA	5 cut(s)	191, 321, 640, 707, 747
AjnI	CCWGG	1 cut(s)	683
AluBI	AGCT	8 cut(s)	20, 44, 130, 229, 433, 582, 666, 732
AluI	AGCT	8 cut(s)	20, 44, 130, 229, 433, 582, 666, 732
Alw21I	GWGCWC	2 cut(s)	256, 584
Alw26I	GTCTC	2 cut(s)	267, 627
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	2 cut(s)	149, 354
AoxI	GGCC	3 cut(s)	148, 376, 438
ApaI	GGGCCC	1 cut(s)	380
ApaLI	GTGCAC	1 cut(s)	252
ApoI	RAATTY	2 cut(s)	544, 742
AsiGI	ACCGGT	1 cut(s)	423
AspS9I	GGNCC	2 cut(s)	376, 377
AsuHPI	GGTGA	4 cut(s)	63, 85, 97, 659
AsuNHI	GCTAGC	1 cut(s)	728
BaeGI	GKGCMC	3 cut(s)	256, 272, 380
BalI	TGGCCA	1 cut(s)	440
BanII	GRGCYC	3 cut(s)	380, 584, 663
Bbv12I	GWGCWC	2 cut(s)	256, 584
BccI	CCATC	2 cut(s)	322, 561
BciT130I	CCWGG	1 cut(s)	685
BcoDI	GTCTC	2 cut(s)	267, 627
BfaI	CTAG	2 cut(s)	236, 729
BfuAI	ACCTGC	1 cut(s)	733
BisI	GCNGC	1 cut(s)	240
BlpI	GCTNAGC	1 cut(s)	662
BlsI	GCNGC	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	685
BmgT120I	GGNCC	2 cut(s)	376, 377
BmiI	GGNNCC	1 cut(s)	378
BmrFI	CCNGG	1 cut(s)	685
BmtI	GCTAGC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	667
Bpu1102I	GCTNAGC	1 cut(s)	662
BpuEI	CTTGAG	1 cut(s)	551
BsaJI	CCNNGG	3 cut(s)	145, 380, 415
BsaWI	WCCGGW	2 cut(s)	274, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	249
BseBI	CCWGG	1 cut(s)	685
BseDI	CCNNGG	3 cut(s)	145, 380, 415
BseGI	GGATG	2 cut(s)	481, 676
BseMII	CTCAG	3 cut(s)	272, 278, 676
BseNI	ACTGG	1 cut(s)	249
BseRI	GAGGAG	2 cut(s)	494, 640
BseSI	GKGCMC	3 cut(s)	256, 272, 380
BseYI	CCCAGC	1 cut(s)	666
BshFI	GGCC	3 cut(s)	150, 378, 440
BshTI	ACCGGT	1 cut(s)	423
BsiHKAI	GWGCWC	2 cut(s)	256, 584
BsiSI	CCGG	2 cut(s)	275, 424
BsmAI	GTCTC	2 cut(s)	267, 627
BsnI	GGCC	3 cut(s)	150, 378, 440
Bsp120I	GGGCCC	1 cut(s)	376
Bsp1286I	GDGCHC	5 cut(s)	256, 272, 380, 584, 663
Bsp143I	GATC	3 cut(s)	154, 346, 387
Bsp1720I	GCTNAGC	1 cut(s)	662
BspACI	CCGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	150, 378, 440
BspCNI	CTCAG	3 cut(s)	271, 277, 675
BspLI	GGNNCC	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	733
BspOI	GCTAGC	1 cut(s)	732
BspPI	GGATC	2 cut(s)	149, 354
BspQI	GCTCTTC	1 cut(s)	739
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	249
BssAI	RCCGGY	1 cut(s)	423
BssECI	CCNNGG	3 cut(s)	145, 380, 415
BssMI	GATC	3 cut(s)	154, 346, 387
BssT1I	CCWWGG	3 cut(s)	145, 380, 415
Bst2UI	CCWGG	1 cut(s)	685
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	6 cut(s)	56, 204, 326, 389, 625, 739
BstC8I	GCNNGC	2 cut(s)	431, 730
BstDEI	CTNAG	3 cut(s)	258, 264, 662
BstF5I	GGATG	2 cut(s)	481, 676
BstKTI	GATC	3 cut(s)	157, 349, 390
BstMAI	GTCTC	2 cut(s)	267, 627
BstMBI	GATC	3 cut(s)	154, 346, 387
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	1 cut(s)	685
BstNSI	RCATGY	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	683
BstSLI	GKGCMC	3 cut(s)	256, 272, 380
BstX2I	RGATCY	1 cut(s)	154
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	3 cut(s)	150, 378, 440
BtsCI	GGATG	2 cut(s)	481, 676
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	4 cut(s)	69, 256, 272, 348
BveI	ACCTGC	1 cut(s)	733
Cac8I	GCNNGC	2 cut(s)	431, 730
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	376, 377
Csp6I	GTAC	1 cut(s)	47
CspAI	ACCGGT	1 cut(s)	423
CviAII	CATG	4 cut(s)	97, 367, 458, 643
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	3 cut(s)	258, 264, 662
DpnI	GATC	3 cut(s)	156, 348, 389
DpnII	GATC	3 cut(s)	154, 346, 387
EaeI	YGGCCR	1 cut(s)	438
Eam1104I	CTCTTC	6 cut(s)	56, 204, 326, 389, 625, 739
EarI	CTCTTC	6 cut(s)	56, 204, 326, 389, 625, 739
Ecl136II	GAGCTC	1 cut(s)	582
Eco130I	CCWWGG	3 cut(s)	145, 380, 415
Eco24I	GRGCYC	3 cut(s)	380, 584, 663
Eco53kI	GAGCTC	1 cut(s)	582
EcoICRI	GAGCTC	1 cut(s)	582
EcoO109I	RGGNCCY	2 cut(s)	376, 377
EcoRI	GAATTC	1 cut(s)	742
EcoRII	CCWGG	1 cut(s)	683
EcoT14I	CCWWGG	3 cut(s)	145, 380, 415
EcoT38I	GRGCYC	3 cut(s)	380, 584, 663
ErhI	CCWWGG	3 cut(s)	145, 380, 415
FaeI	CATG	4 cut(s)	100, 370, 461, 646
FatI	CATG	4 cut(s)	96, 366, 457, 642
Fnu4HI	GCNGC	1 cut(s)	240
FokI	GGATG	2 cut(s)	488, 683
FriOI	GRGCYC	3 cut(s)	380, 584, 663
Fsp4HI	GCNGC	1 cut(s)	240
FspBI	CTAG	2 cut(s)	236, 729
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	1 cut(s)	667
HaeIII	GGCC	3 cut(s)	150, 378, 440
HapII	CCGG	2 cut(s)	275, 424
Hin1II	CATG	4 cut(s)	100, 370, 461, 646
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	3 cut(s)	18, 128, 431
HinfI	GANTC	2 cut(s)	137, 562
HpaII	CCGG	2 cut(s)	275, 424
HphI	GGTGA	4 cut(s)	63, 85, 97, 659
Hpy166II	GTNNAC	3 cut(s)	254, 402, 529
Hpy188I	TCNGA	2 cut(s)	328, 586
Hpy188III	TCNNGA	3 cut(s)	198, 391, 747
Hpy8I	GTNNAC	3 cut(s)	254, 402, 529
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	4 cut(s)	171, 254, 429, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	3 cut(s)	258, 264, 662
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	4 cut(s)	100, 370, 461, 646
Kzo9I	GATC	3 cut(s)	154, 346, 387
LguI	GCTCTTC	1 cut(s)	739
LmnI	GCTCC	2 cut(s)	364, 587
MaeI	CTAG	2 cut(s)	236, 729
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	2 cut(s)	69, 647
MalI	GATC	3 cut(s)	156, 348, 389
MboI	GATC	3 cut(s)	154, 346, 387
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	5 cut(s)	256, 272, 380, 584, 663
MlsI	TGGCCA	1 cut(s)	440
MluCI	AATT	3 cut(s)	544, 654, 742
MluNI	TGGCCA	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	573, 609
MnlI	CCTC	9 cut(s)	84, 132, 229, 267, 334, 390, 472, 502, 618
Mox20I	TGGCCA	1 cut(s)	440
MscI	TGGCCA	1 cut(s)	440
Msp20I	TGGCCA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	666
MspI	CCGG	2 cut(s)	275, 424
MspR9I	CCNGG	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	685
MwoI	GCNNNNNNNGC	1 cut(s)	127
NdeII	GATC	3 cut(s)	154, 346, 387
NheI	GCTAGC	1 cut(s)	728
NlaIII	CATG	4 cut(s)	100, 370, 461, 646
NlaIV	GGNNCC	1 cut(s)	378
NmuCI	GTSAC	2 cut(s)	69, 647
NspI	RCATGY	1 cut(s)	461
PciI	ACATGT	1 cut(s)	457
PciSI	GCTCTTC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	137, 562
PinAI	ACCGGT	1 cut(s)	423
PkrI	GCNGC	1 cut(s)	241
PscI	ACATGT	1 cut(s)	457
Psp124BI	GAGCTC	1 cut(s)	584
Psp6I	CCWGG	1 cut(s)	683
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	683
PspN4I	GGNNCC	1 cut(s)	378
PspOMI	GGGCCC	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	376, 377
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	666
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	584
SapI	GCTCTTC	1 cut(s)	739
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	3 cut(s)	154, 346, 387
Sau96I	GGNCC	2 cut(s)	376, 377
ScrFI	CCNGG	1 cut(s)	685
SduI	GDGCHC	5 cut(s)	256, 272, 380, 584, 663
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	544, 654, 742
SsiI	CCGC	1 cut(s)	240
SspMI	CTAG	2 cut(s)	236, 729
SstI	GAGCTC	1 cut(s)	584
StyD4I	CCNGG	1 cut(s)	683
StyI	CCWWGG	3 cut(s)	145, 380, 415
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	2 cut(s)	500, 740
TasI	AATT	3 cut(s)	544, 654, 742
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	242
TfiI	GAWTC	2 cut(s)	137, 562
TscAI	CASTG	4 cut(s)	69, 256, 272, 348
TseFI	GTSAC	2 cut(s)	69, 647
Tsp45I	GTSAC	2 cut(s)	69, 647
TspDTI	ATGAA	4 cut(s)	17, 113, 383, 726
TspRI	CASTG	4 cut(s)	69, 256, 272, 348
VneI	GTGCAC	1 cut(s)	252
XapI	RAATTY	2 cut(s)	544, 742
XceI	RCATGY	1 cut(s)	461
XspI	CTAG	2 cut(s)	236, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.