Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001381.1

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Reverse (-)

29885 .. 30823

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001381.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgatggaggaacccttgaaaaccctcaatctcattgacaagttaactggaggtgaattgcgctgcccatcaattgctagttgtagtagtaatagtagtaccgatccattggaacaccaccgactactttgtcttgcagcttcttctttcactctggatcattcttggtggcagttcctgccctccaccacaaagaagagaaaaggaaaagaactagtaccggtggaggaagagtcagcagcacctatgaatcatcccaaacgtcgaaaactagtactgaatgatcaccagaataaaagagagctgaataaaagaagtgccttggaaaataaagataatgacaacgagagctgtcttggtcttactttgggggtttctccggtgtcaaccacccagccggttcatgataatcagttgaaggagatgagagaaaaccgagtagccgaacgtgatgatgacgaaagcattcttaggcttactgctggtcctagtgatcatcatcatcatcaaaggccggtggtgcgccgtagtgacccggccatgttcaacatcaagaagaagttaacgccaagcgacctcggacacctgagcaggctcttgctgccaaaagatatggtcaaaagccatattttgcctaattttgatgaagacttggtaggaaggatggagagtgaagtgggtttagaagttactgtgttcgacgaggatcggcaaaaggagtatgagttgatattcaaatacttgaaatcgtcgagaagttacgttttcaacggaaagtggacacatgactttgtgaagttgttaaatctcaacaaggatgatgagatcggactttacttggatactattccatatccaaaacccaagttccacttttcactcttgaaactcgcaggccaagctgacgggtgctcctgctcttcaacaagaatagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

312

Amino Acids

35.65

Weight (kDa)

6.71

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	129
AclWI	GGATC	3 cut(s)	98, 165, 714
AcoI	YGGCCR	1 cut(s)	537
AfaI	GTAC	3 cut(s)	100, 219, 276
AgeI	ACCGGT	1 cut(s)	220
AgsI	TTSAA	8 cut(s)	19, 418, 547, 736, 745, 769, 886, 924
AhlI	ACTAGT	2 cut(s)	214, 271
AluBI	AGCT	4 cut(s)	140, 304, 351, 902
AluI	AGCT	4 cut(s)	140, 304, 351, 902
Alw21I	GWGCWC	1 cut(s)	914
AlwI	GGATC	3 cut(s)	98, 165, 714
AlwNI	CAGNNNCTG	1 cut(s)	178
AoxI	GGCC	3 cut(s)	512, 537, 895
ApeKI	GCWGC	4 cut(s)	63, 137, 239, 601
AsiGI	ACCGGT	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	465
AspLEI	GCGC	2 cut(s)	63, 525
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	2 cut(s)	65, 278
AvaII	GGWCC	1 cut(s)	485
BbsI	GAAGAC	1 cut(s)	654
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	4 cut(s)	50, 149, 251, 588
BccI	CCATC	2 cut(s)	76, 658
BceAI	ACGGC	1 cut(s)	510
BciVI	GTATCC	1 cut(s)	835
BclI	TGATCA	2 cut(s)	283, 493
BcnI	CCSGG	1 cut(s)	536
BcuI	ACTAGT	2 cut(s)	214, 271
BfaI	CTAG	4 cut(s)	78, 215, 272, 489
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	4 cut(s)	64, 138, 240, 602
BlsI	GCNGC	4 cut(s)	65, 139, 241, 603
BmcAI	AGTACT	1 cut(s)	276
Bme1390I	CCNGG	1 cut(s)	536
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	654
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	536
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	321, 577
BsaWI	WCCGGW	2 cut(s)	220, 379
BsaXI	ACNNNNNCTCC	6 cut(s)	218, 248, 710, 740, 896, 926
Bse118I	RCCGGY	3 cut(s)	220, 397, 514
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	498
BseDI	CCNNGG	2 cut(s)	321, 577
BseGI	GGATG	3 cut(s)	253, 669, 823
BseJI	GATNNNNATC	1 cut(s)	498
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	4 cut(s)	50, 149, 251, 588
BseYI	CCCAGC	1 cut(s)	393
BshFI	GGCC	3 cut(s)	514, 539, 897
BshTI	ACCGGT	1 cut(s)	220
BsiHKAI	GWGCWC	1 cut(s)	914
BsiSI	CCGG	5 cut(s)	221, 380, 398, 515, 536
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	3 cut(s)	514, 539, 897
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
BspANI	GGCC	3 cut(s)	514, 539, 897
BspCNI	CTCAG	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	403
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	3 cut(s)	98, 165, 714
BspQI	GCTCTTC	1 cut(s)	925
BsrFI	RCCGGY	3 cut(s)	220, 397, 514
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	3 cut(s)	220, 397, 514
BssECI	CCNNGG	2 cut(s)	321, 577
BssMI	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	3 cut(s)	191, 225, 925
BstAPI	GCANNNNNTGC	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	593, 895
BstDEI	CTNAG	2 cut(s)	470, 587
BstF5I	GGATG	3 cut(s)	253, 669, 823
BstHHI	GCGC	2 cut(s)	63, 525
BstKTI	GATC	6 cut(s)	106, 160, 286, 496, 709, 828
BstMBI	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 520, 601, 899
BstSCI	CCNGG	1 cut(s)	534
BstV1I	GCAGC	4 cut(s)	50, 149, 251, 588
BstV2I	GAAGAC	1 cut(s)	654
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	3 cut(s)	514, 539, 897
BtsCI	GGATG	3 cut(s)	253, 669, 823
Cac8I	GCNNGC	2 cut(s)	593, 895
CaiI	CAGNNNCTG	1 cut(s)	178
CciI	TCATGA	1 cut(s)	403
CfoI	GCGC	2 cut(s)	63, 525
Cfr10I	RCCGGY	3 cut(s)	220, 397, 514
Cfr13I	GGNCC	1 cut(s)	485
Csp6I	GTAC	3 cut(s)	99, 218, 275
CspAI	ACCGGT	1 cut(s)	220
CviAII	CATG	3 cut(s)	404, 541, 785
CviQI	GTAC	3 cut(s)	99, 218, 275
DdeI	CTNAG	2 cut(s)	470, 587
DpnI	GATC	6 cut(s)	105, 159, 285, 495, 708, 827
DpnII	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
DrdI	GACNNNNNNGTC	1 cut(s)	129
DseDI	GACNNNNNNGTC	1 cut(s)	129
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	191, 225, 925
EarI	CTCTTC	3 cut(s)	191, 225, 925
Eco130I	CCWWGG	1 cut(s)	321
Eco47I	GGWCC	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	3 cut(s)	407, 544, 788
FaiI	YATR	8 cut(s)	248, 405, 542, 614, 627, 723, 786, 853
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FatI	CATG	3 cut(s)	403, 540, 784
FbaI	TGATCA	2 cut(s)	283, 493
Fnu4HI	GCNGC	4 cut(s)	64, 138, 240, 602
FokI	GGATG	3 cut(s)	240, 676, 830
Fsp4HI	GCNGC	4 cut(s)	64, 138, 240, 602
FspBI	CTAG	4 cut(s)	78, 215, 272, 489
GlaI	GCGC	2 cut(s)	62, 524
GluI	GCNGC	4 cut(s)	64, 138, 240, 602
GsaI	CCCAGC	1 cut(s)	397
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	514, 539, 897
HapII	CCGG	5 cut(s)	221, 380, 398, 515, 536
HhaI	GCGC	2 cut(s)	63, 525
Hin1II	CATG	3 cut(s)	407, 544, 788
Hin6I	GCGC	2 cut(s)	61, 523
HinP1I	GCGC	2 cut(s)	61, 523
HincII	GTYRAC	3 cut(s)	45, 387, 564
HindII	GTYRAC	3 cut(s)	45, 387, 564
HinfI	GANTC	2 cut(s)	233, 250
HpaI	GTTAAC	2 cut(s)	45, 564
HpaII	CCGG	5 cut(s)	221, 380, 398, 515, 536
HphI	GGTGA	2 cut(s)	65, 278
Hpy166II	GTNNAC	4 cut(s)	45, 387, 564, 780
Hpy188I	TCNGA	2 cut(s)	581, 830
Hpy188III	TCNNGA	5 cut(s)	155, 404, 553, 753, 883
Hpy8I	GTNNAC	4 cut(s)	45, 387, 564, 780
Hpy99I	CGWCG	3 cut(s)	267, 704, 754
HpyAV	CCTTC	2 cut(s)	412, 654
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	3 cut(s)	262, 448, 762
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 520, 601, 899
HpyF3I	CTNAG	2 cut(s)	470, 587
HpySE526I	ACGT	3 cut(s)	262, 448, 762
Hsp92II	CATG	3 cut(s)	407, 544, 788
HspAI	GCGC	2 cut(s)	61, 523
Ksp22I	TGATCA	2 cut(s)	283, 493
KspAI	GTTAAC	2 cut(s)	45, 564
Kzo9I	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
LguI	GCTCTTC	1 cut(s)	925
LmnI	GCTCC	1 cut(s)	917
Lsp1109I	GCAGC	4 cut(s)	50, 149, 251, 588
MaeI	CTAG	4 cut(s)	78, 215, 272, 489
MaeII	ACGT	3 cut(s)	262, 448, 762
MaeIII	GTNAC	3 cut(s)	530, 688, 758
MalI	GATC	6 cut(s)	105, 159, 285, 495, 708, 827
MboI	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
MboII	GAAGA	6 cut(s)	135, 208, 242, 568, 659, 912
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	914
MluCI	AATT	3 cut(s)	56, 72, 637
MlyI	GAGTC	1 cut(s)	242
MnlI	CCTC	6 cut(s)	35, 44, 193, 220, 587, 697
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	44, 563, 803
MspI	CCGG	5 cut(s)	221, 380, 398, 515, 536
MspR9I	CCNGG	1 cut(s)	536
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	465
MwoI	GCNNNNNNNGC	4 cut(s)	178, 520, 601, 899
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
NlaIII	CATG	3 cut(s)	407, 544, 788
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	530
PagI	TCATGA	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	925
PctI	GAATGC	1 cut(s)	465
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	250
PinAI	ACCGGT	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	65, 139, 241, 603
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
PspFI	CCCAGC	1 cut(s)	393
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	178
RsaI	GTAC	3 cut(s)	100, 219, 276
RsaNI	GTAC	3 cut(s)	99, 218, 275
SapI	GCTCTTC	1 cut(s)	925
SaqAI	TTAA	3 cut(s)	44, 563, 803
SatI	GCNGC	4 cut(s)	64, 138, 240, 602
Sau3AI	GATC	6 cut(s)	103, 157, 283, 493, 706, 825
Sau96I	GGNCC	1 cut(s)	485
ScaI	AGTACT	1 cut(s)	276
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	536
SduI	GDGCHC	1 cut(s)	914
SinI	GGWCC	1 cut(s)	485
SpeI	ACTAGT	2 cut(s)	214, 271
Sse9I	AATT	3 cut(s)	56, 72, 637
SspMI	CTAG	4 cut(s)	78, 215, 272, 489
StyD4I	CCNGG	1 cut(s)	534
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	3 cut(s)	265, 451, 765
TaqI	TCGA	3 cut(s)	265, 699, 752
TasI	AATT	3 cut(s)	56, 72, 637
TatI	WGTACW	1 cut(s)	274
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	3 cut(s)	44, 563, 803
Tru9I	TTAA	3 cut(s)	44, 563, 803
TseFI	GTSAC	1 cut(s)	530
TseI	GCWGC	4 cut(s)	63, 137, 239, 601
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	3 cut(s)	263, 392, 660
TspGWI	ACGGA	1 cut(s)	786
VpaK11BI	GGWCC	1 cut(s)	485
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	4 cut(s)	78, 215, 272, 489
ZrmI	AGTACT	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.