Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

37588371 .. 37589309

Gene Structure 939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGGAAGCACCCTTGAAAACCCTCAATCTCATCGACAAGTTAACAGGTGAATCTTGGTCATCAATTGCTAGTTTTAGTAGTAGTATGGATCCATTGGAACACCACCGACTACTTTGCATTGCAGCTTCTACTTTCACTTTGCATCAATCTTGGTGGCAGCCACCACCCTCCACTACAAAGAAGAGAAAAGGAAAAGAACTGGCGGAGGAAGAGTCAGCAGCACCTAACAATCATCCCAAACGTCGAAAAATAGTACTGACTGATCATCAACAGAATATCATAGAGCTGAAGAAAAGAAGTGACTTGGTAACCAAAAATAATGACAATGAGAGCTTTCTCGGACTTACTTTGGGGGTTTCTCCGGTGAGGCCAACCACCCTGCCGGCTCATGATGAACAGTTGAAGGAAATAAGGGATAACCGAGTAGCCAAACATGACAACGACAGCCTTCTTAAGCTTAATGTTGGGACTAATGAAGTTCATCATTATCATCAAAGGCCGGTGGTGCGCCGCAGTGACCCGGCCAAGTTCAACATAAAAAAGAAGTTAACACCGAGCGACCTCGGACACCTGAGCAGGCTGCTGCTGCCAAAAGACATGGTCACAAACTACATTCTACCTAAGTTTGATGAAGACTTGAAAGCAAGGATGAGGAGTGAAGTAGGTTTGGAGGTTACTGTGTTTGATGAGGTTCGGCAGAAGGAGTATGAGTTAATATTCAAGTACTTGAAGTCGTCGGGAAGTTATGTTTTCAACGGAAAGTGGACACATGACTTTGTGAAGGTGTTGGATCTCAACAAGGATGATGAGATCGGACTTTACTTGCATAGCAGCACTACTCCATCTCCCAAACCCAAGTTTCACTTTTCACTCTTGAAACTCGCAGGCCAAGCTGACGAGGGTTCTCCTGCTAGCTCTTCAACAAGAAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

313

Amino Acids

35.55

Weight (kDa)

9.13

Isoelectric Point (pI)

48.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 514
AclWI	GGATC	3 cut(s)	86, 99, 801
AcoI	YGGCCR	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	258, 728
AflII	CTTAAG	1 cut(s)	455
AgsI	TTSAA	9 cut(s)	19, 406, 535, 643, 724, 733, 757, 880, 924
AluBI	AGCT	6 cut(s)	128, 289, 336, 460, 896, 918
AluI	AGCT	6 cut(s)	128, 289, 336, 460, 896, 918
AlwI	GGATC	3 cut(s)	86, 99, 801
AoxI	GGCC	4 cut(s)	371, 500, 525, 889
ApeKI	GCWGC	7 cut(s)	125, 160, 221, 583, 586, 589, 834
AspLEI	GCGC	1 cut(s)	513
AsuC2I	CCSGG	1 cut(s)	524
AsuHPI	GGTGA	2 cut(s)	62, 379
AsuNHI	GCTAGC	1 cut(s)	914
BamHI	GGATCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	642
BbvI	GCAGC	7 cut(s)	137, 172, 233, 570, 573, 576, 846
BccI	CCATC	1 cut(s)	853
BcgI	CGANNNNNNTGC	2 cut(s)	99, 133
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	524
BfaI	CTAG	2 cut(s)	72, 915
BfrI	CTTAAG	1 cut(s)	455
BisI	GCNGC	8 cut(s)	126, 161, 222, 514, 584, 587, 590, 835
BlsI	GCNGC	8 cut(s)	127, 162, 223, 515, 585, 588, 591, 836
BmcAI	AGTACT	2 cut(s)	258, 728
Bme1390I	CCNGG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	524
BmsI	GCATC	1 cut(s)	154
BmtI	GCTAGC	1 cut(s)	918
BpiI	GAAGAC	1 cut(s)	642
Bpu10I	CCTNAGC	1 cut(s)	575
BpuMI	CCSGG	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	6 cut(s)	200, 230, 698, 728, 832, 862
Bse118I	RCCGGY	2 cut(s)	385, 502
Bse1I	ACTGG	1 cut(s)	207
Bse3DI	GCAATG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	235, 657, 811
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	670
BseXI	GCAGC	7 cut(s)	137, 172, 233, 570, 573, 576, 846
BshFI	GGCC	4 cut(s)	373, 502, 527, 891
BsiSI	CCGG	4 cut(s)	365, 386, 503, 524
BslFI	GGGAC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	484
BsnI	GGCC	4 cut(s)	373, 502, 527, 891
Bsp143I	GATC	4 cut(s)	91, 265, 793, 813
BspACI	CCGC	2 cut(s)	206, 514
BspANI	GGCC	4 cut(s)	373, 502, 527, 891
BspCNI	CTCAG	1 cut(s)	567
BspHI	TCATGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	93
BspOI	GCTAGC	1 cut(s)	918
BspPI	GGATC	3 cut(s)	86, 99, 801
BspQI	GCTCTTC	1 cut(s)	925
BspTI	CTTAAG	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	2 cut(s)	385, 502
BsrI	ACTGG	1 cut(s)	207
BssAI	RCCGGY	2 cut(s)	385, 502
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	4 cut(s)	91, 265, 793, 813
Bst4CI	ACNGT	2 cut(s)	402, 682
Bst6I	CTCTTC	3 cut(s)	179, 207, 925
BstAFI	CTTAAG	1 cut(s)	455
BstC8I	GCNNGC	4 cut(s)	387, 581, 889, 916
BstDEI	CTNAG	2 cut(s)	575, 624
BstEII	GGTNACC	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	235, 657, 811
BstHHI	GCGC	1 cut(s)	513
BstKTI	GATC	4 cut(s)	94, 268, 796, 816
BstMBI	GATC	4 cut(s)	91, 265, 793, 813
BstMWI	GCNNNNNNNGC	3 cut(s)	508, 589, 893
BstPI	GGTNACC	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	522
BstV1I	GCAGC	7 cut(s)	137, 172, 233, 570, 573, 576, 846
BstV2I	GAAGAC	1 cut(s)	642
BstX2I	RGATCY	2 cut(s)	91, 793
BstYI	RGATCY	2 cut(s)	91, 793
BsuRI	GGCC	4 cut(s)	373, 502, 527, 891
BtsCI	GGATG	3 cut(s)	235, 657, 811
BtsI	GCAGTG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	523
Cac8I	GCNNGC	4 cut(s)	387, 581, 889, 916
CciI	TCATGA	1 cut(s)	391
CfoI	GCGC	1 cut(s)	513
Cfr10I	RCCGGY	2 cut(s)	385, 502
Csp6I	GTAC	2 cut(s)	257, 727
CspCI	CAANNNNNGTGG	2 cut(s)	137, 172
CviAII	CATG	4 cut(s)	392, 437, 601, 773
CviQI	GTAC	2 cut(s)	257, 727
DdeI	CTNAG	2 cut(s)	575, 624
DpnI	GATC	4 cut(s)	93, 267, 795, 815
DpnII	GATC	4 cut(s)	91, 265, 793, 813
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	3 cut(s)	179, 207, 925
EarI	CTCTTC	3 cut(s)	179, 207, 925
EciI	GGCGGA	1 cut(s)	221
Eco57I	CTGAAG	1 cut(s)	311
Eco91I	GGTNACC	1 cut(s)	310
EcoO65I	GGTNACC	1 cut(s)	310
FaeI	CATG	4 cut(s)	395, 440, 604, 776
FalI	AAGNNNNNCTT	2 cut(s)	851, 883
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	4 cut(s)	391, 436, 600, 772
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	8 cut(s)	126, 161, 222, 514, 584, 587, 590, 835
FokI	GGATG	3 cut(s)	222, 664, 818
Fsp4HI	GCNGC	8 cut(s)	126, 161, 222, 514, 584, 587, 590, 835
FspBI	CTAG	2 cut(s)	72, 915
GlaI	GCGC	1 cut(s)	512
GluI	GCNGC	8 cut(s)	126, 161, 222, 514, 584, 587, 590, 835
HaeIII	GGCC	4 cut(s)	373, 502, 527, 891
HapII	CCGG	4 cut(s)	365, 386, 503, 524
HhaI	GCGC	1 cut(s)	513
Hin1II	CATG	4 cut(s)	395, 440, 604, 776
Hin6I	GCGC	1 cut(s)	511
HinP1I	GCGC	1 cut(s)	511
HincII	GTYRAC	2 cut(s)	45, 552
HindII	GTYRAC	2 cut(s)	45, 552
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	53, 215
HpaI	GTTAAC	2 cut(s)	45, 552
HpaII	CCGG	4 cut(s)	365, 386, 503, 524
HphI	GGTGA	2 cut(s)	62, 379
Hpy166II	GTNNAC	3 cut(s)	45, 552, 768
Hpy188I	TCNGA	3 cut(s)	344, 569, 818
Hpy188III	TCNNGA	3 cut(s)	392, 741, 877
Hpy8I	GTNNAC	3 cut(s)	45, 552, 768
Hpy99I	CGWCG	2 cut(s)	249, 742
HpyAV	CCTTC	4 cut(s)	400, 461, 697, 778
HpyCH4III	ACNGT	2 cut(s)	402, 682
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	120, 125, 145, 829
HpyF10VI	GCNNNNNNNGC	3 cut(s)	508, 589, 893
HpyF3I	CTNAG	2 cut(s)	575, 624
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	395, 440, 604, 776
HspAI	GCGC	1 cut(s)	511
KroI	GCCGGC	1 cut(s)	385
KroNI	GCCGGC	1 cut(s)	387
Ksp22I	TGATCA	1 cut(s)	265
KspAI	GTTAAC	2 cut(s)	45, 552
Kzo9I	GATC	4 cut(s)	91, 265, 793, 813
LguI	GCTCTTC	1 cut(s)	925
Lsp1109I	GCAGC	7 cut(s)	137, 172, 233, 570, 573, 576, 846
LweI	GCATC	1 cut(s)	154
MaeI	CTAG	2 cut(s)	72, 915
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	5 cut(s)	302, 310, 518, 604, 676
MalI	GATC	4 cut(s)	93, 267, 795, 815
MboI	GATC	4 cut(s)	91, 265, 793, 813
MboII	GAAGA	5 cut(s)	196, 224, 304, 647, 912
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	2 cut(s)	91, 793
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	224
MmeI	TCCRAC	1 cut(s)	771
MnlI	CCTC	9 cut(s)	35, 181, 202, 363, 575, 648, 667, 685, 895
MroNI	GCCGGC	1 cut(s)	385
MseI	TTAA	5 cut(s)	44, 456, 462, 551, 716
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	4 cut(s)	365, 386, 503, 524
MspR9I	CCNGG	1 cut(s)	524
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	3 cut(s)	508, 589, 893
NaeI	GCCGGC	1 cut(s)	387
NciI	CCSGG	1 cut(s)	524
NdeII	GATC	4 cut(s)	91, 265, 793, 813
NgoMIV	GCCGGC	1 cut(s)	385
NheI	GCTAGC	1 cut(s)	914
NlaIII	CATG	4 cut(s)	395, 440, 604, 776
NlaIV	GGNNCC	1 cut(s)	93
NmuCI	GTSAC	3 cut(s)	302, 518, 604
PagI	TCATGA	1 cut(s)	391
PciSI	GCTCTTC	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	387
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	602
PkrI	GCNGC	8 cut(s)	127, 162, 223, 515, 585, 588, 591, 836
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
PspEI	GGTNACC	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	93
PsuI	RGATCY	2 cut(s)	91, 793
PsyI	GACNNNGTC	1 cut(s)	602
RsaI	GTAC	2 cut(s)	258, 728
RsaNI	GTAC	2 cut(s)	257, 727
SapI	GCTCTTC	1 cut(s)	925
SaqAI	TTAA	5 cut(s)	44, 456, 462, 551, 716
SatI	GCNGC	8 cut(s)	126, 161, 222, 514, 584, 587, 590, 835
Sau3AI	GATC	4 cut(s)	91, 265, 793, 813
ScaI	AGTACT	2 cut(s)	258, 728
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	1 cut(s)	524
SfaNI	GCATC	1 cut(s)	154
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	2 cut(s)	206, 514
SspI	AATATT	1 cut(s)	720
SspMI	CTAG	2 cut(s)	72, 915
StyD4I	CCNGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	402, 682
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	36, 247
TasI	AATT	1 cut(s)	66
TatI	WGTACW	2 cut(s)	256, 726
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	5 cut(s)	44, 456, 462, 551, 716
Tru9I	TTAA	5 cut(s)	44, 456, 462, 551, 716
TscAI	CASTG	1 cut(s)	523
TseFI	GTSAC	3 cut(s)	302, 518, 604
TseI	GCWGC	7 cut(s)	125, 160, 221, 583, 586, 589, 834
Tsp45I	GTSAC	3 cut(s)	302, 518, 604
TspDTI	ATGAA	4 cut(s)	411, 473, 492, 648
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	1 cut(s)	523
Tth111I	GACNNNGTC	1 cut(s)	602
Vha464I	CTTAAG	1 cut(s)	455
XspI	CTAG	2 cut(s)	72, 915
ZrmI	AGTACT	2 cut(s)	258, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.