Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

87367648 .. 87368926

Gene Structure 1279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG566100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGATGGAGGAACCCTTGAAAACCCTCAATCTCATTGACAAGTTAACTGGAGGTGAATTGCGCTGCCCATCAATTGCTAGTTGTAGTAGTACCAATCCATTGGAACACCACCAACTACTTTGCCTTGCAGCTTCTTCTTTCACTCTGGATCAATCTTGGTGGCAGCCCCTGCCCTCCACCACAAAGAAGAGAAAAGGAAAAGAACTAGTACCGGTGGAGGAAGAGTCAGCAGCACCTATGAATCATCCCAAACGTCGAAAACTAGTAATGCTCCTATCACTGAATGATCACCAGAATAATAGAGAGCTGAATAAAAGAAGTGCCTTGGAAAATAAAGATAATGACAACGAGAGCTGCCTTGGTCTTACTTTGGGGGTTTCTCCGGTGTCAACCACCCTGCCGGTTCATGATAATCAGTTGAAGGAGATAAGAGAAAACCGAGTAGCCGAACGTGATGATGACGAAAGCATTCTTAGGCTTACTGTTGGTCCTAGTGATCATCATCATCATCAAAGGCCGGTGGTGCGCCGTAGTGACCCGGCCATGTTCAACATCAAGAAGAAGTTAACGCCAAGCGACCTCGGACACCTGAGCAGGCTCTTGCTGCCAAAAGATATGGTCAAAAGCCATATTTTGCCTAATTTTGATGAAGATTTGGTAGGAAGGATGGAGAGTGAAGTGGGTTTGGAAGTTACTGTGTTCGACGAGGATCGGCAAAAGGAGTATGAGTTGATATTCAAATACTTGAAATCGTCGAGAAGTTACGTTTTCAACGGTAAGTGGACACATGACTTTGTGAAGTTGTTAAATCTCAACAAGGATGATGAGATCGGAATTTACTTGGATACTACTCCATCTCCAAAACCCAAGTTCCACTTTTCACTCTTGAAACTCGCAGGCCAAGCTGACGAGGGTGCTCCTGCTCTTCAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

312

Amino Acids

35.51

Weight (kDa)

6.24

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	156, 717
AcoI	YGGCCR	1 cut(s)	540
AcsI	RAATTY	1 cut(s)	834
AfaI	GTAC	2 cut(s)	91, 210
AgeI	ACCGGT	1 cut(s)	211
AgsI	TTSAA	8 cut(s)	19, 421, 550, 739, 748, 772, 889, 929
AhlI	ACTAGT	2 cut(s)	205, 262
AluBI	AGCT	4 cut(s)	131, 307, 354, 905
AluI	AGCT	4 cut(s)	131, 307, 354, 905
Alw21I	GWGCWC	1 cut(s)	919
AlwI	GGATC	2 cut(s)	156, 717
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	3 cut(s)	515, 540, 898
ApeKI	GCWGC	6 cut(s)	63, 128, 163, 230, 354, 604
ApoI	RAATTY	1 cut(s)	834
AsiGI	ACCGGT	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	63, 528
AspS9I	GGNCC	1 cut(s)	488
AsuC2I	CCSGG	1 cut(s)	539
AsuHPI	GGTGA	2 cut(s)	65, 281
AvaII	GGWCC	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	6 cut(s)	50, 140, 175, 242, 341, 591
BccI	CCATC	3 cut(s)	76, 661, 862
BceAI	ACGGC	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	838
BclI	TGATCA	2 cut(s)	286, 496
BcnI	CCSGG	1 cut(s)	539
BcuI	ACTAGT	2 cut(s)	205, 262
BfaI	CTAG	4 cut(s)	78, 206, 263, 492
BfuI	GTATCC	1 cut(s)	838
BisI	GCNGC	6 cut(s)	64, 129, 164, 231, 355, 605
BlsI	GCNGC	6 cut(s)	65, 130, 165, 232, 356, 606
Bme1390I	CCNGG	1 cut(s)	539
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	12
BmrFI	CCNGG	1 cut(s)	539
BpmI	CTGGAG	1 cut(s)	69
Bpu10I	CCTNAGC	1 cut(s)	590
BpuMI	CCSGG	1 cut(s)	539
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	324, 358, 580
BsaWI	WCCGGW	2 cut(s)	211, 382
BsaXI	ACNNNNNCTCC	6 cut(s)	209, 239, 713, 743, 841, 871
Bse118I	RCCGGY	3 cut(s)	211, 400, 517
Bse1I	ACTGG	1 cut(s)	52
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	324, 358, 580
BseGI	GGATG	3 cut(s)	244, 672, 826
BseJI	GATNNNNATC	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	6 cut(s)	50, 140, 175, 242, 341, 591
BshFI	GGCC	3 cut(s)	517, 542, 900
BshTI	ACCGGT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	919
BsiSI	CCGG	5 cut(s)	212, 383, 401, 518, 539
BsmI	GAATGC	1 cut(s)	468
BsnI	GGCC	3 cut(s)	517, 542, 900
Bsp1286I	GDGCHC	1 cut(s)	919
Bsp143I	GATC	5 cut(s)	148, 286, 496, 709, 828
BspANI	GGCC	3 cut(s)	517, 542, 900
BspCNI	CTCAG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	156, 717
BspQI	GCTCTTC	1 cut(s)	930
BsrFI	RCCGGY	3 cut(s)	211, 400, 517
BsrI	ACTGG	1 cut(s)	52
BssAI	RCCGGY	3 cut(s)	211, 400, 517
BssECI	CCNNGG	3 cut(s)	324, 358, 580
BssMI	GATC	5 cut(s)	148, 286, 496, 709, 828
BssT1I	CCWWGG	2 cut(s)	324, 358
Bst4CI	ACNGT	3 cut(s)	484, 697, 776
Bst6I	CTCTTC	3 cut(s)	182, 216, 930
BstAPI	GCANNNNNTGC	1 cut(s)	169
BstC8I	GCNNGC	2 cut(s)	596, 898
BstDEI	CTNAG	2 cut(s)	473, 590
BstF5I	GGATG	3 cut(s)	244, 672, 826
BstHHI	GCGC	2 cut(s)	63, 528
BstKTI	GATC	5 cut(s)	151, 289, 499, 712, 831
BstMBI	GATC	5 cut(s)	148, 286, 496, 709, 828
BstMWI	GCNNNNNNNGC	4 cut(s)	169, 523, 604, 902
BstSCI	CCNGG	1 cut(s)	537
BstV1I	GCAGC	6 cut(s)	50, 140, 175, 242, 341, 591
BstXI	CCANNNNNNTGG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	838
BsuRI	GGCC	3 cut(s)	517, 542, 900
BtsCI	GGATG	3 cut(s)	244, 672, 826
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	596, 898
CaiI	CAGNNNCTG	1 cut(s)	169
CciI	TCATGA	1 cut(s)	406
CfoI	GCGC	2 cut(s)	63, 528
Cfr10I	RCCGGY	3 cut(s)	211, 400, 517
Cfr13I	GGNCC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	90, 209
CspAI	ACCGGT	1 cut(s)	211
CspCI	CAANNNNNGTGG	2 cut(s)	140, 175
CviAII	CATG	3 cut(s)	407, 544, 788
CviQI	GTAC	2 cut(s)	90, 209
DdeI	CTNAG	2 cut(s)	473, 590
DpnI	GATC	5 cut(s)	150, 288, 498, 711, 830
DpnII	GATC	5 cut(s)	148, 286, 496, 709, 828
EaeI	YGGCCR	1 cut(s)	540
Eam1104I	CTCTTC	3 cut(s)	182, 216, 930
EarI	CTCTTC	3 cut(s)	182, 216, 930
Eco130I	CCWWGG	2 cut(s)	324, 358
Eco47I	GGWCC	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	324, 358
ErhI	CCWWGG	2 cut(s)	324, 358
FaeI	CATG	3 cut(s)	410, 547, 791
FaiI	YATR	7 cut(s)	239, 408, 545, 617, 630, 726, 789
FalI	AAGNNNNNCTT	2 cut(s)	860, 892
FatI	CATG	3 cut(s)	406, 543, 787
FbaI	TGATCA	2 cut(s)	286, 496
Fnu4HI	GCNGC	6 cut(s)	64, 129, 164, 231, 355, 605
FokI	GGATG	3 cut(s)	231, 679, 833
Fsp4HI	GCNGC	6 cut(s)	64, 129, 164, 231, 355, 605
FspBI	CTAG	4 cut(s)	78, 206, 263, 492
GlaI	GCGC	2 cut(s)	62, 527
GluI	GCNGC	6 cut(s)	64, 129, 164, 231, 355, 605
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	3 cut(s)	517, 542, 900
HapII	CCGG	5 cut(s)	212, 383, 401, 518, 539
HhaI	GCGC	2 cut(s)	63, 528
Hin1II	CATG	3 cut(s)	410, 547, 791
Hin6I	GCGC	2 cut(s)	61, 526
HinP1I	GCGC	2 cut(s)	61, 526
HincII	GTYRAC	3 cut(s)	45, 390, 567
HindII	GTYRAC	3 cut(s)	45, 390, 567
HinfI	GANTC	2 cut(s)	224, 241
HpaI	GTTAAC	2 cut(s)	45, 567
HpaII	CCGG	5 cut(s)	212, 383, 401, 518, 539
HphI	GGTGA	2 cut(s)	65, 281
Hpy166II	GTNNAC	4 cut(s)	45, 390, 567, 783
Hpy188I	TCNGA	2 cut(s)	584, 833
Hpy188III	TCNNGA	5 cut(s)	146, 407, 556, 756, 886
Hpy8I	GTNNAC	4 cut(s)	45, 390, 567, 783
Hpy99I	CGWCG	3 cut(s)	258, 707, 757
HpyAV	CCTTC	2 cut(s)	415, 657
HpyCH4III	ACNGT	3 cut(s)	484, 697, 776
HpyCH4IV	ACGT	3 cut(s)	253, 451, 765
HpyCH4V	TGCA	1 cut(s)	128
HpyF10VI	GCNNNNNNNGC	4 cut(s)	169, 523, 604, 902
HpyF3I	CTNAG	2 cut(s)	473, 590
HpySE526I	ACGT	3 cut(s)	253, 451, 765
Hsp92II	CATG	3 cut(s)	410, 547, 791
HspAI	GCGC	2 cut(s)	61, 526
Ksp22I	TGATCA	2 cut(s)	286, 496
KspAI	GTTAAC	2 cut(s)	45, 567
Kzo9I	GATC	5 cut(s)	148, 286, 496, 709, 828
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	2 cut(s)	276, 922
Lsp1109I	GCAGC	6 cut(s)	50, 140, 175, 242, 341, 591
MaeI	CTAG	4 cut(s)	78, 206, 263, 492
MaeII	ACGT	3 cut(s)	253, 451, 765
MaeIII	GTNAC	3 cut(s)	533, 691, 761
MalI	GATC	5 cut(s)	150, 288, 498, 711, 830
MboI	GATC	5 cut(s)	148, 286, 496, 709, 828
MboII	GAAGA	6 cut(s)	126, 199, 233, 571, 662, 917
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	919
MluCI	AATT	4 cut(s)	56, 72, 640, 834
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	7 cut(s)	35, 44, 184, 211, 590, 700, 904
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	3 cut(s)	44, 566, 806
MspI	CCGG	5 cut(s)	212, 383, 401, 518, 539
MspR9I	CCNGG	1 cut(s)	539
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	1 cut(s)	468
MwoI	GCNNNNNNNGC	4 cut(s)	169, 523, 604, 902
NciI	CCSGG	1 cut(s)	539
NdeII	GATC	5 cut(s)	148, 286, 496, 709, 828
NlaIII	CATG	3 cut(s)	410, 547, 791
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	1 cut(s)	533
PagI	TCATGA	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	930
PctI	GAATGC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	241
PinAI	ACCGGT	1 cut(s)	211
PkrI	GCNGC	6 cut(s)	65, 130, 165, 232, 356, 606
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	488
PstNI	CAGNNNCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	91, 210
RsaNI	GTAC	2 cut(s)	90, 209
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	44, 566, 806
SatI	GCNGC	6 cut(s)	64, 129, 164, 231, 355, 605
Sau3AI	GATC	5 cut(s)	148, 286, 496, 709, 828
Sau96I	GGNCC	1 cut(s)	488
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	1 cut(s)	539
SduI	GDGCHC	1 cut(s)	919
SinI	GGWCC	1 cut(s)	488
SpeI	ACTAGT	2 cut(s)	205, 262
Sse9I	AATT	4 cut(s)	56, 72, 640, 834
SspMI	CTAG	4 cut(s)	78, 206, 263, 492
StyD4I	CCNGG	1 cut(s)	537
StyI	CCWWGG	2 cut(s)	324, 358
TaaI	ACNGT	3 cut(s)	484, 697, 776
TaiI	ACGT	3 cut(s)	256, 454, 768
TaqI	TCGA	3 cut(s)	256, 702, 755
TasI	AATT	4 cut(s)	56, 72, 640, 834
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	3 cut(s)	44, 566, 806
Tru9I	TTAA	3 cut(s)	44, 566, 806
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	6 cut(s)	63, 128, 163, 230, 354, 604
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	3 cut(s)	254, 395, 663
TspRI	CASTG	1 cut(s)	285
VpaK11BI	GGWCC	1 cut(s)	488
XapI	RAATTY	1 cut(s)	834
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	4 cut(s)	78, 206, 263, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.