Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Reverse (-)

1889044 .. 1889976

Gene Structure 933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00001570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGGAACCATTGAAAACCCTCAATCTCATTGACAAGTTAACTGGAGGTGAATTGCGCTGCCCATCAATTGCTAGTTGTAGTAGTAATAGTAGTACCGATCCATTGGAACACCACCGACTACTTTGCCTTGCAGCTTCTTCTTTCACTCTAGAGCATTCTTGGTGGCAGCCCCTGCCCTCCACCACAAAGAAGAGAAAAGGAAAAGAACTAGTACCGGTGGAGGAAGGGTCAGCAGCACCTATGAATCATCCCAAACGTCGAAAACTAGTACTGAATGATCACCAGAATAATAGAGAGCTGAATAAAAGAAGTGCCTTGGAAAATAAAGATAATCACAACGAGAGCTGTCTTGGTCTTACTTTGGGGGTTTCTCCGGTGTCAACCACCCAGCCGGTTCATGATAATCAGTTGAAGGAGATAAGAGAAAACCGAGTAGCCGAACGTGATGACGACGAAAGCATTCTTAGGCTTACTGCTGGTCCTAGTGATCATCATCATCATCAAAGGCCGGTGGTGCGCCGTAGTGACCCGGCCATGTTCAACATCTTGAAGAAGTTAACGCCAAGCGACCTCGGACACCTGAGCAGGCTCTTGCTGCCAAAAGATATGGTCAAAAGCCATATTTTGCCTAATTTTGATGAAGACTTGGTAGGAAGGATGGAGAGTGAAGTGGGTTTGGAAGTTACTGTGTTCGACGAGGATCGGCAAAAGGAGTATGAGTTGATATTCAAATACTTGAAATCGTCGAGAAGTTACGTTTTCAACGGAAAGTGGACACATGACTTTGTGAAGTTATTAAATCTCAACAAGGATGATGAGATCGGACTTTACTTGGATACTACTCCATCTCCAAAACCCAAGTTCCACTTTTCACTTTTGAAACTCGCAGGCCAAGCTGACGAGGGTGCTCCTGCTCTTCGACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0009685 GO:0009987 GO:0010817 GO:0016101 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0045543 GO:0051213 GO:0052635 GO:0055114 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy B3 DIOX_N

Protein Analysis

310

Amino Acids

35.22

Weight (kDa)

6.58

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	95, 711
AcoI	YGGCCR	1 cut(s)	534
AfaI	GTAC	3 cut(s)	97, 216, 273
AgeI	ACCGGT	1 cut(s)	217
AgsI	TTSAA	8 cut(s)	16, 415, 544, 553, 733, 742, 766, 883
AhlI	ACTAGT	2 cut(s)	211, 268
AluBI	AGCT	4 cut(s)	137, 301, 348, 899
AluI	AGCT	4 cut(s)	137, 301, 348, 899
Alw21I	GWGCWC	1 cut(s)	913
AlwI	GGATC	2 cut(s)	95, 711
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	3 cut(s)	509, 534, 892
ApeKI	GCWGC	5 cut(s)	60, 134, 169, 236, 598
AsiGI	ACCGGT	1 cut(s)	217
Asp700I	GAANNNNTTC	1 cut(s)	462
AspLEI	GCGC	2 cut(s)	60, 522
AspS9I	GGNCC	1 cut(s)	482
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	62, 275
AvaII	GGWCC	1 cut(s)	482
BbsI	GAAGAC	1 cut(s)	651
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	5 cut(s)	47, 146, 181, 248, 585
BccI	CCATC	3 cut(s)	73, 655, 856
BceAI	ACGGC	1 cut(s)	507
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciVI	GTATCC	1 cut(s)	832
BclI	TGATCA	2 cut(s)	280, 490
BcnI	CCSGG	1 cut(s)	533
BcuI	ACTAGT	2 cut(s)	211, 268
BfaI	CTAG	5 cut(s)	75, 152, 212, 269, 486
BfuI	GTATCC	1 cut(s)	832
BisI	GCNGC	5 cut(s)	61, 135, 170, 237, 599
BlsI	GCNGC	5 cut(s)	62, 136, 171, 238, 600
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	533
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	533
BpiI	GAAGAC	1 cut(s)	651
BpmI	CTGGAG	1 cut(s)	66
Bpu10I	CCTNAGC	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	318, 574
BsaWI	WCCGGW	2 cut(s)	217, 376
BsaXI	ACNNNNNCTCC	6 cut(s)	215, 245, 707, 737, 835, 865
Bse118I	RCCGGY	3 cut(s)	217, 394, 511
Bse1I	ACTGG	1 cut(s)	49
Bse8I	GATNNNNATC	1 cut(s)	495
BseDI	CCNNGG	2 cut(s)	318, 574
BseGI	GGATG	3 cut(s)	250, 666, 820
BseJI	GATNNNNATC	1 cut(s)	495
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	49
BseXI	GCAGC	5 cut(s)	47, 146, 181, 248, 585
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	3 cut(s)	511, 536, 894
BshTI	ACCGGT	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	5 cut(s)	218, 377, 395, 512, 533
BsmI	GAATGC	2 cut(s)	157, 462
BsnI	GGCC	3 cut(s)	511, 536, 894
Bsp1286I	GDGCHC	1 cut(s)	913
Bsp143I	GATC	5 cut(s)	100, 280, 490, 703, 822
BspANI	GGCC	3 cut(s)	511, 536, 894
BspCNI	CTCAG	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	95, 711
BspQI	GCTCTTC	1 cut(s)	924
BsrFI	RCCGGY	3 cut(s)	217, 394, 511
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	3 cut(s)	217, 394, 511
BssECI	CCNNGG	2 cut(s)	318, 574
BssMI	GATC	5 cut(s)	100, 280, 490, 703, 822
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	691
Bst6I	CTCTTC	2 cut(s)	188, 924
BstAPI	GCANNNNNTGC	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	590, 892
BstDEI	CTNAG	2 cut(s)	467, 584
BstF5I	GGATG	3 cut(s)	250, 666, 820
BstHHI	GCGC	2 cut(s)	60, 522
BstKTI	GATC	5 cut(s)	103, 283, 493, 706, 825
BstMBI	GATC	5 cut(s)	100, 280, 490, 703, 822
BstMWI	GCNNNNNNNGC	4 cut(s)	175, 517, 598, 896
BstSCI	CCNGG	1 cut(s)	531
BstV1I	GCAGC	5 cut(s)	47, 146, 181, 248, 585
BstV2I	GAAGAC	1 cut(s)	651
BsuI	GTATCC	1 cut(s)	832
BsuRI	GGCC	3 cut(s)	511, 536, 894
BtsCI	GGATG	3 cut(s)	250, 666, 820
Cac8I	GCNNGC	2 cut(s)	590, 892
CaiI	CAGNNNCTG	1 cut(s)	175
CciI	TCATGA	1 cut(s)	400
CfoI	GCGC	2 cut(s)	60, 522
Cfr10I	RCCGGY	3 cut(s)	217, 394, 511
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	3 cut(s)	96, 215, 272
CspAI	ACCGGT	1 cut(s)	217
CviAII	CATG	3 cut(s)	401, 538, 782
CviQI	GTAC	3 cut(s)	96, 215, 272
DdeI	CTNAG	2 cut(s)	467, 584
DpnI	GATC	5 cut(s)	102, 282, 492, 705, 824
DpnII	GATC	5 cut(s)	100, 280, 490, 703, 822
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	2 cut(s)	188, 924
EarI	CTCTTC	2 cut(s)	188, 924
Eco130I	CCWWGG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	3 cut(s)	404, 541, 785
FaiI	YATR	7 cut(s)	245, 402, 539, 611, 624, 720, 783
FalI	AAGNNNNNCTT	2 cut(s)	854, 886
FatI	CATG	3 cut(s)	400, 537, 781
FbaI	TGATCA	2 cut(s)	280, 490
Fnu4HI	GCNGC	5 cut(s)	61, 135, 170, 237, 599
FokI	GGATG	3 cut(s)	237, 673, 827
Fsp4HI	GCNGC	5 cut(s)	61, 135, 170, 237, 599
FspBI	CTAG	5 cut(s)	75, 152, 212, 269, 486
GlaI	GCGC	2 cut(s)	59, 521
GluI	GCNGC	5 cut(s)	61, 135, 170, 237, 599
GsaI	CCCAGC	1 cut(s)	394
GsuI	CTGGAG	1 cut(s)	66
HaeIII	GGCC	3 cut(s)	511, 536, 894
HapII	CCGG	5 cut(s)	218, 377, 395, 512, 533
HhaI	GCGC	2 cut(s)	60, 522
Hin1II	CATG	3 cut(s)	404, 541, 785
Hin6I	GCGC	2 cut(s)	58, 520
HinP1I	GCGC	2 cut(s)	58, 520
HincII	GTYRAC	3 cut(s)	42, 384, 561
HindII	GTYRAC	3 cut(s)	42, 384, 561
HinfI	GANTC	1 cut(s)	247
HpaI	GTTAAC	2 cut(s)	42, 561
HpaII	CCGG	5 cut(s)	218, 377, 395, 512, 533
HphI	GGTGA	2 cut(s)	62, 275
Hpy166II	GTNNAC	4 cut(s)	42, 384, 561, 777
Hpy188I	TCNGA	2 cut(s)	578, 827
Hpy188III	TCNNGA	4 cut(s)	152, 401, 550, 750
Hpy8I	GTNNAC	4 cut(s)	42, 384, 561, 777
Hpy99I	CGWCG	4 cut(s)	264, 458, 701, 751
HpyAV	CCTTC	3 cut(s)	221, 409, 651
HpyCH4III	ACNGT	1 cut(s)	691
HpyCH4IV	ACGT	3 cut(s)	259, 445, 759
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	4 cut(s)	175, 517, 598, 896
HpyF3I	CTNAG	2 cut(s)	467, 584
HpySE526I	ACGT	3 cut(s)	259, 445, 759
Hsp92II	CATG	3 cut(s)	404, 541, 785
HspAI	GCGC	2 cut(s)	58, 520
Ksp22I	TGATCA	2 cut(s)	280, 490
KspAI	GTTAAC	2 cut(s)	42, 561
Kzo9I	GATC	5 cut(s)	100, 280, 490, 703, 822
LguI	GCTCTTC	1 cut(s)	924
LmnI	GCTCC	1 cut(s)	916
Lsp1109I	GCAGC	5 cut(s)	47, 146, 181, 248, 585
MaeI	CTAG	5 cut(s)	75, 152, 212, 269, 486
MaeII	ACGT	3 cut(s)	259, 445, 759
MaeIII	GTNAC	3 cut(s)	527, 685, 755
MalI	GATC	5 cut(s)	102, 282, 492, 705, 824
MboI	GATC	5 cut(s)	100, 280, 490, 703, 822
MboII	GAAGA	5 cut(s)	132, 205, 565, 656, 911
MfeI	CAATTG	1 cut(s)	69
MhlI	GDGCHC	1 cut(s)	913
MluCI	AATT	3 cut(s)	53, 69, 634
MnlI	CCTC	7 cut(s)	32, 41, 190, 217, 584, 694, 898
MroXI	GAANNNNTTC	1 cut(s)	462
MseI	TTAA	3 cut(s)	41, 560, 800
MspI	CCGG	5 cut(s)	218, 377, 395, 512, 533
MspR9I	CCNGG	1 cut(s)	533
MunI	CAATTG	1 cut(s)	69
Mva1269I	GAATGC	2 cut(s)	157, 462
MwoI	GCNNNNNNNGC	4 cut(s)	175, 517, 598, 896
NciI	CCSGG	1 cut(s)	533
NdeII	GATC	5 cut(s)	100, 280, 490, 703, 822
NlaIII	CATG	3 cut(s)	404, 541, 785
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	924
PctI	GAATGC	2 cut(s)	157, 462
PdmI	GAANNNNTTC	1 cut(s)	462
PfeI	GAWTC	1 cut(s)	247
PinAI	ACCGGT	1 cut(s)	217
PkrI	GCNGC	5 cut(s)	62, 136, 171, 238, 600
PspFI	CCCAGC	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	482
PstNI	CAGNNNCTG	1 cut(s)	175
RsaI	GTAC	3 cut(s)	97, 216, 273
RsaNI	GTAC	3 cut(s)	96, 215, 272
SapI	GCTCTTC	1 cut(s)	924
SaqAI	TTAA	3 cut(s)	41, 560, 800
SatI	GCNGC	5 cut(s)	61, 135, 170, 237, 599
Sau3AI	GATC	5 cut(s)	100, 280, 490, 703, 822
Sau96I	GGNCC	1 cut(s)	482
ScaI	AGTACT	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	913
SinI	GGWCC	1 cut(s)	482
SpeI	ACTAGT	2 cut(s)	211, 268
Sse9I	AATT	3 cut(s)	53, 69, 634
SspMI	CTAG	5 cut(s)	75, 152, 212, 269, 486
StyD4I	CCNGG	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	1 cut(s)	691
TaiI	ACGT	3 cut(s)	262, 448, 762
TaqI	TCGA	4 cut(s)	262, 696, 749, 922
TasI	AATT	3 cut(s)	53, 69, 634
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	41, 560, 800
Tru9I	TTAA	3 cut(s)	41, 560, 800
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	5 cut(s)	60, 134, 169, 236, 598
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	3 cut(s)	260, 389, 657
TspGWI	ACGGA	1 cut(s)	783
VpaK11BI	GGWCC	1 cut(s)	482
XbaI	TCTAGA	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	462
XspI	CTAG	5 cut(s)	75, 152, 212, 269, 486
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.