Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0007611

Physical Location & Seq

Genomic Coordinates Forward (+)

23845019 .. 23858965

Gene Structure 13947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAAGAGAATTTGATCGACAAGTTAATGTATGCAGCGAATCACCCTCAACTCGCTAGTAGTAGCAGAAACAAGACTGCAGAAGACAACCAACAACTCGTGATGCAGCCACTCGCTTTAACTTTGCATCAATCTTGGTTGCAGCCGGCGTCGACCACAAACAAGAGAAAAGCAAGAGCACCAGTTATTCCGGAAGATGAAGATAGAATTAAGAAACCAGCCCCTCCTACTAATCCGAAACATCAAAAACTAGTAGTCTCTCATCATGAGAATATGGAGCCAAAGACGAAAAGTGACCCGGTAGCGGAATGTGATGATGCTCAGAACCTTCATACACTAACTGAAGGAAGCGCTAGGGCGAGTGCTCATCATCATATTGCTGAGCAGGTGGCTCGTGACCCGGCCTTATACAAAGTAAAGAAGAAGTTGACTCTAAGTGACCTCGGAAACTTAAGCAGGCTCTTGGTGCCAAAAGAGATGGTCAAGAACCATGTTCTGCCTCACGTGAATGGCGACTTTGTACAAAGACTCGAGAGCAAAGCCGGTAAACAAGTTACGGTTAAAGACTCTGACAAAGAGACCGAGCATCAATTAACTTTTAGATACTTGAGGTCGTCAAAGAGTTATGTTTTCAATGGAAATTGGATGGAAATAGTGAAGGGGAGAGATTTGAAGAAGGATGATGAAATTGGACTTTACTGGGACTCTCTCAATTCCAATTTCCACTTTTCTCTTGCCGATGAAGTTACTCGTGTTCATCAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

29.03

Weight (kDa)

8.48

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	141 - 242	2.7e-07	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007611)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28853
fragaria_vesca	FvH4_3g45250 FvH4_7g12901
prunus_persica	Prupe.5G100300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0351961 RchiOBHm_Chr5g0082871
rosa_laevigata	RLG00000028371 RLG00000036996
rosa_multiflora	Rmu_sc0001381.1_g000011 Rmu_sc0007728.1_g000010
rosa_roxburghii	Rroxscaffold_1G00001570 Rroxscaffold_4G00303420
rosa_rugosa	Rorug01G0223200 Rorug05G0480500
rosa_samantha	Rh1AG237200 Rh1BG207400 Rh1CG221600 Rh1DG234400 Rh5AG530900 Rh5BG557800 Rh5CG580800 Rh5DG566100
rosa_wichuraiana	Rw1G020630 Rw5G049780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	376
Acc36I	ACCTGC	1 cut(s)	376
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	190
AciI	CCGC	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	10
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	505
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	522
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	304
AflII	CTTAAG	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	634, 673
AhlI	ACTAGT	1 cut(s)	250
Alw21I	GWGCWC	2 cut(s)	181, 367
Alw26I	GTCTC	2 cut(s)	262, 572
Ama87I	CYCGRG	1 cut(s)	530
Aor13HI	TCCGGA	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	3 cut(s)	35, 106, 142
ApoI	RAATTY	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	353
AsuC2I	CCSGG	2 cut(s)	299, 401
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	530
BanI	GGYRCC	1 cut(s)	466
BauI	CACGAG	3 cut(s)	98, 393, 750
BbrPI	CACGTG	1 cut(s)	505
BbsI	GAAGAC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	181, 367
BbvI	GCAGC	3 cut(s)	47, 118, 154
BccI	CCATC	2 cut(s)	472, 640
BcgI	CGANNNNNNTGC	2 cut(s)	374, 408
BcnI	CCSGG	2 cut(s)	299, 401
BcoDI	GTCTC	2 cut(s)	262, 572
BcuI	ACTAGT	1 cut(s)	250
BfaI	CTAG	3 cut(s)	57, 251, 354
BfmI	CTRYAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	376
BisI	GCNGC	3 cut(s)	36, 107, 143
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	3 cut(s)	37, 108, 144
Bme1390I	CCNGG	2 cut(s)	299, 401
BmeT110I	CYCGRG	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	279, 468
BmrFI	CCNGG	2 cut(s)	299, 401
BmrI	ACTGGG	1 cut(s)	709
BmsI	GCATC	4 cut(s)	93, 136, 307, 595
BmuI	ACTGGG	1 cut(s)	709
BpiI	GAAGAC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	299, 401
BsaAI	YACGTR	1 cut(s)	505
BsaHI	GRCGYC	1 cut(s)	149
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse118I	RCCGGY	2 cut(s)	145, 542
Bse1I	ACTGG	2 cut(s)	182, 704
BseAI	TCCGGA	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	651, 685
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	335, 372
BseNI	ACTGG	2 cut(s)	182, 704
BseXI	GCAGC	3 cut(s)	47, 118, 154
BshFI	GGCC	1 cut(s)	404
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	2 cut(s)	181, 367
BsiHKCI	CYCGRG	1 cut(s)	530
BsiSI	CCGG	5 cut(s)	146, 191, 299, 401, 543
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmAI	GTCTC	2 cut(s)	262, 572
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	572
BsoBI	CYCGRG	1 cut(s)	530
Bsp1286I	GDGCHC	2 cut(s)	181, 367
Bsp13I	TCCGGA	1 cut(s)	190
Bsp1407I	TGTACA	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	15
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	2 cut(s)	334, 373
BspEI	TCCGGA	1 cut(s)	190
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	2 cut(s)	279, 468
BspMAI	CTGCAG	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	466
BspTI	CTTAAG	1 cut(s)	451
BspTNI	GGTCTC	1 cut(s)	572
BsrFI	RCCGGY	2 cut(s)	145, 542
BsrGI	TGTACA	1 cut(s)	520
BsrI	ACTGG	2 cut(s)	182, 704
BssAI	RCCGGY	2 cut(s)	145, 542
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	1 cut(s)	15
BssNI	GRCGYC	1 cut(s)	149
BssSI	CACGAG	3 cut(s)	98, 393, 750
Bst2BI	CACGAG	3 cut(s)	98, 393, 750
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	149
BstAFI	CTTAAG	1 cut(s)	451
BstAUI	TGTACA	1 cut(s)	520
BstBAI	YACGTR	1 cut(s)	505
BstC8I	GCNNGC	2 cut(s)	147, 458
BstDEI	CTNAG	3 cut(s)	321, 381, 434
BstF5I	GGATG	2 cut(s)	651, 685
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	1 cut(s)	18
BstMAI	GTCTC	2 cut(s)	262, 572
BstMBI	GATC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	466
BstSCI	CCNGG	2 cut(s)	297, 399
BstSFI	CTRYAG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	47, 118, 154
BstV2I	GAAGAC	1 cut(s)	90
BsuRI	GGCC	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	651, 685
BveI	ACCTGC	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	147, 458
CciI	TCATGA	1 cut(s)	265
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	2 cut(s)	145, 542
CseI	GACGC	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	521
CviAII	CATG	2 cut(s)	266, 491
CviJI	RGCY	8 cut(s)	109, 145, 221, 280, 392, 404, 460, 542
CviKI_1	RGCY	8 cut(s)	109, 145, 221, 280, 392, 404, 460, 542
CviQI	GTAC	1 cut(s)	521
DdeI	CTNAG	3 cut(s)	321, 381, 434
DpnI	GATC	1 cut(s)	17
DpnII	GATC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	572
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	530
FaeI	CATG	2 cut(s)	269, 494
FaiI	YATR	8 cut(s)	33, 267, 275, 333, 375, 409, 492, 627
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	2 cut(s)	265, 490
FblI	GTMKAC	1 cut(s)	152
Fnu4HI	GCNGC	3 cut(s)	36, 107, 143
FokI	GGATG	2 cut(s)	658, 692
Fsp4HI	GCNGC	3 cut(s)	36, 107, 143
FspBI	CTAG	3 cut(s)	57, 251, 354
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	3 cut(s)	36, 107, 143
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	5 cut(s)	146, 191, 299, 401, 543
HgaI	GACGC	1 cut(s)	138
HhaI	GCGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	269, 494
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HincII	GTYRAC	2 cut(s)	153, 429
HindII	GTYRAC	2 cut(s)	153, 429
HinfI	GANTC	5 cut(s)	40, 430, 528, 566, 704
HpaII	CCGG	5 cut(s)	146, 191, 299, 401, 543
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	3 cut(s)	153, 429, 548
Hpy188I	TCNGA	4 cut(s)	237, 324, 446, 571
Hpy188III	TCNNGA	6 cut(s)	100, 191, 266, 395, 484, 532
Hpy8I	GTNNAC	3 cut(s)	153, 429, 548
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	4 cut(s)	338, 338, 652, 670
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	35, 80, 106, 127, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	466
HpyF3I	CTNAG	3 cut(s)	321, 381, 434
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	269, 494
HspAI	GCGC	1 cut(s)	351
Kpn2I	TCCGGA	1 cut(s)	190
KroI	GCCGGC	1 cut(s)	145
KroNI	GCCGGC	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	15
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	3 cut(s)	47, 118, 154
LweI	GCATC	4 cut(s)	93, 136, 307, 595
MaeI	CTAG	3 cut(s)	57, 251, 354
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	5 cut(s)	293, 395, 437, 553, 745
MalI	GATC	1 cut(s)	17
MboI	GATC	1 cut(s)	15
MboII	GAAGA	6 cut(s)	17, 95, 206, 212, 433, 685
MhlI	GDGCHC	2 cut(s)	181, 367
MluCI	AATT	7 cut(s)	10, 207, 590, 640, 687, 712, 718
MlyI	GAGTC	4 cut(s)	424, 522, 560, 698
MnlI	CCTC	5 cut(s)	57, 234, 452, 510, 603
MroI	TCCGGA	1 cut(s)	190
MroNI	GCCGGC	1 cut(s)	145
MseI	TTAA	6 cut(s)	26, 119, 210, 452, 561, 593
MslI	CAYNNNNRTG	1 cut(s)	507
MspCI	CTTAAG	1 cut(s)	451
MspI	CCGG	5 cut(s)	146, 191, 299, 401, 543
MspR9I	CCNGG	2 cut(s)	299, 401
MwoI	GCNNNNNNNGC	1 cut(s)	466
NaeI	GCCGGC	1 cut(s)	147
NciI	CCSGG	2 cut(s)	299, 401
NdeII	GATC	1 cut(s)	15
NgoMIV	GCCGGC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	269, 494
NlaIV	GGNNCC	2 cut(s)	279, 468
NmuCI	GTSAC	3 cut(s)	293, 395, 437
PaeR7I	CTCGAG	1 cut(s)	530
PagI	TCATGA	1 cut(s)	265
PaqCI	CACCTGC	1 cut(s)	376
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdiI	GCCGGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	37, 108, 144
PleI	GAGTC	4 cut(s)	424, 522, 560, 698
PmaCI	CACGTG	1 cut(s)	505
PmlI	CACGTG	1 cut(s)	505
PpsI	GAGTC	4 cut(s)	424, 522, 560, 698
Ppu21I	YACGTR	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	505
PspN4I	GGNNCC	2 cut(s)	279, 468
PstI	CTGCAG	1 cut(s)	82
RsaI	GTAC	1 cut(s)	522
RsaNI	GTAC	1 cut(s)	521
RseI	CAYNNNNRTG	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	6 cut(s)	26, 119, 210, 452, 561, 593
SatI	GCNGC	3 cut(s)	36, 107, 143
Sau3AI	GATC	1 cut(s)	15
SchI	GAGTC	4 cut(s)	424, 522, 560, 698
ScrFI	CCNGG	2 cut(s)	299, 401
SduI	GDGCHC	2 cut(s)	181, 367
SetI	ASST	5 cut(s)	330, 390, 444, 507, 614
SfaNI	GCATC	4 cut(s)	93, 136, 307, 595
SfcI	CTRYAG	1 cut(s)	78
Sfr274I	CTCGAG	1 cut(s)	530
SlaI	CTCGAG	1 cut(s)	530
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	3 cut(s)	451, 530, 607
SmoI	CTYRAG	3 cut(s)	451, 530, 607
SpeI	ACTAGT	1 cut(s)	250
Sse9I	AATT	7 cut(s)	10, 207, 590, 640, 687, 712, 718
SsiI	CCGC	1 cut(s)	305
SspMI	CTAG	3 cut(s)	57, 251, 354
StyD4I	CCNGG	2 cut(s)	297, 399
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	3 cut(s)	18, 152, 531
TaqII	GACCGA	1 cut(s)	596
TasI	AATT	7 cut(s)	10, 207, 590, 640, 687, 712, 718
TatI	WGTACW	1 cut(s)	520
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	6 cut(s)	26, 119, 210, 452, 561, 593
Tru9I	TTAA	6 cut(s)	26, 119, 210, 452, 561, 593
TseFI	GTSAC	3 cut(s)	293, 395, 437
TseI	GCWGC	3 cut(s)	35, 106, 142
Tsp45I	GTSAC	3 cut(s)	293, 395, 437
TspDTI	ATGAA	5 cut(s)	213, 320, 699, 746, 756
Vha464I	CTTAAG	1 cut(s)	451
XapI	RAATTY	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	530
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	3 cut(s)	57, 251, 354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.