Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Reverse (-)

11236576 .. 11238043

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29280.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATGAAGGAAGAGAAGGAGAGATAGAGAAGAAGAAGAAGAAAGATGAAGAAGGAGAAGTGAAGGAAGGAGTAGCATCAATAGCTTTGTTACCATGTGGGACTATCTCTGGTCATTTCATTCAGATGCCTAGCTCTATCTGTTATGGCCTCCATGGCACTGAACTAGCTTGTGAGACTGAGTGTAGCCGCGGTGAGGATTATCGGTTGATCAAACTCACTATCATAGACTACAATAGAAAGAAGGAACAAACAGTTGTAGTGGAGTGCAAAGGCCATGATGCTGCTCGAATTAATGATGTCGAGCATGCTCACGGGTGGGAGGAAGATGTGATAGGATTAGTCGAAGAAAAACACGGGAAGAAGAAAGTATCGGTTTCGTTCGAGTGTGAGACATTGAAGGCAGATGAAGCAGCAGAGGACCATATCAGACAGTTTATGCCCAAATTAGCTGGACTTGATGCTGTTATTAACATTGGACCGATGAAGATTTCCGGGCTTGATTTTGCTGCGGTGGAAGAGGGACACATAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.69

Weight (kDa)

5.07

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	192
AciI	CCGC	3 cut(s)	190, 192, 512
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	1 cut(s)	400
AluBI	AGCT	4 cut(s)	86, 135, 170, 452
AluI	AGCT	4 cut(s)	86, 135, 170, 452
Alw26I	GTCTC	2 cut(s)	170, 386
AoxI	GGCC	2 cut(s)	148, 274
ApeKI	GCWGC	3 cut(s)	284, 413, 509
AseI	ATTAAT	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	421, 479
AsuC2I	CCSGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	421, 479
BbvI	GCAGC	3 cut(s)	271, 425, 496
BclI	TGATCA	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	170, 386
BfaI	CTAG	2 cut(s)	132, 167
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	4 cut(s)	190, 285, 414, 510
BlsI	GCNGC	4 cut(s)	191, 286, 415, 511
Bme1390I	CCNGG	1 cut(s)	496
Bme18I	GGWCC	2 cut(s)	421, 479
BmgT120I	GGNCC	2 cut(s)	421, 479
BmrFI	CCNGG	1 cut(s)	496
BmsI	GCATC	4 cut(s)	86, 117, 271, 451
BpuMI	CCSGG	1 cut(s)	496
BsaJI	CCNNGG	2 cut(s)	154, 190
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	154, 190
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	3 cut(s)	271, 425, 496
Bsh1236I	CGCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	150, 276
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	170, 386
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	2 cut(s)	150, 276
Bsp143I	GATC	1 cut(s)	210
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	3 cut(s)	190, 192, 512
BspANI	GGCC	2 cut(s)	150, 276
BspCNI	CTCAG	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	192
BssECI	CCNNGG	2 cut(s)	154, 190
BssMI	GATC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	154
Bst4CI	ACNGT	2 cut(s)	256, 435
Bst6I	CTCTTC	2 cut(s)	7, 513
BstC8I	GCNNGC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	2 cut(s)	154, 190
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	192
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	2 cut(s)	170, 386
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 156, 410
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	494
BstUI	CGCG	1 cut(s)	192
BstV1I	GCAGC	3 cut(s)	271, 425, 496
BsuRI	GGCC	2 cut(s)	150, 276
BtgI	CCRYGG	2 cut(s)	154, 190
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	309
Cfr13I	GGNCC	2 cut(s)	421, 479
Cfr42I	CCGCGG	1 cut(s)	193
CviAII	CATG	4 cut(s)	96, 155, 278, 308
CviJI	RGCY	8 cut(s)	86, 135, 150, 170, 189, 276, 452, 499
CviKI_1	RGCY	8 cut(s)	86, 135, 150, 170, 189, 276, 452, 499
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	7, 513
EarI	CTCTTC	2 cut(s)	7, 513
Eco130I	CCWWGG	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	421, 479
EcoT14I	CCWWGG	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	4 cut(s)	99, 158, 281, 311
FaiI	YATR	9 cut(s)	97, 147, 156, 227, 279, 309, 426, 440, 530
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	95, 154, 277, 307
FbaI	TGATCA	1 cut(s)	210
Fnu4HI	GCNGC	4 cut(s)	190, 285, 414, 510
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	4 cut(s)	190, 285, 414, 510
FspBI	CTAG	2 cut(s)	132, 167
GluI	GCNGC	4 cut(s)	190, 285, 414, 510
HaeIII	GGCC	2 cut(s)	150, 276
HapII	CCGG	1 cut(s)	495
Hin1II	CATG	4 cut(s)	99, 158, 281, 311
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	2 cut(s)	126, 431
HpyAV	CCTTC	6 cut(s)	11, 47, 58, 62, 238, 394
HpyCH4III	ACNGT	2 cut(s)	256, 435
HpyCH4V	TGCA	1 cut(s)	270
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 156, 410
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	99, 158, 281, 311
Ksp22I	TGATCA	1 cut(s)	210
KspI	CCGCGG	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	3 cut(s)	96, 438, 508
Lsp1109I	GCAGC	3 cut(s)	271, 425, 496
LweI	GCATC	4 cut(s)	86, 117, 271, 451
MaeI	CTAG	2 cut(s)	132, 167
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MluCI	AATT	2 cut(s)	291, 446
MnlI	CCTC	5 cut(s)	161, 190, 316, 412, 514
MseI	TTAA	2 cut(s)	294, 471
MslI	CAYNNNNRTG	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	192
MspI	CCGG	1 cut(s)	495
MspR9I	CCNGG	1 cut(s)	496
MvnI	CGCG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	83, 156, 410
NciI	CCSGG	1 cut(s)	496
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	4 cut(s)	99, 158, 281, 311
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PkrI	GCNGC	4 cut(s)	191, 286, 415, 511
PshBI	ATTAAT	1 cut(s)	294
PspPI	GGNCC	2 cut(s)	421, 479
RseI	CAYNNNNRTG	1 cut(s)	125
SacII	CCGCGG	1 cut(s)	193
SaqAI	TTAA	2 cut(s)	294, 471
SatI	GCNGC	4 cut(s)	190, 285, 414, 510
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	421, 479
ScrFI	CCNGG	1 cut(s)	496
SetI	ASST	4 cut(s)	88, 137, 172, 454
SfaNI	GCATC	4 cut(s)	86, 117, 271, 451
Sfr303I	CCGCGG	1 cut(s)	193
SgrBI	CCGCGG	1 cut(s)	193
SinI	GGWCC	2 cut(s)	421, 479
SmiMI	CAYNNNNRTG	1 cut(s)	125
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	291, 446
SsiI	CCGC	3 cut(s)	190, 192, 512
SspMI	CTAG	2 cut(s)	132, 167
StyD4I	CCNGG	1 cut(s)	494
StyI	CCWWGG	1 cut(s)	154
TaaI	ACNGT	2 cut(s)	256, 435
TaqI	TCGA	4 cut(s)	289, 303, 345, 384
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	291, 446
TauI	GCSGC	1 cut(s)	192
Tru1I	TTAA	2 cut(s)	294, 471
Tru9I	TTAA	2 cut(s)	294, 471
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	3 cut(s)	284, 413, 509
TspDTI	ATGAA	5 cut(s)	21, 63, 109, 423, 500
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	2 cut(s)	421, 479
VspI	ATTAAT	1 cut(s)	294
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	2 cut(s)	132, 167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.