Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Reverse (-)

4202606 .. 4204393

Gene Structure 1788 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1061600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGATGAAAGAGATGAGGAAGTGGTGGAGGAATCAAAAGGTGGGAACTTTGGGGAGGCGATGGAAGGAGTGGCCTCAATAGCACTTTTACCATGTGGGTCCCTCTCCGGCCACTTCATCCACCGCCAGGACTCCGTTAACGTCTGCTTCGGCCTTCAGGGAACCGAGTTGGCATGTGAAAAGGAGTGCAGCAGGGGCGAGGACTACCGTCTGATCAAGCTTGCAATCATAGATTTCAATAGGAAGAAAGAAAAAGTTGTAGTTGTGGAGTGCAGAGGCCATGATGCTGCCCGGTTGCAGAGCATTGATCATGCTCATGGTTGGGAGGAGGATGTTGTGGATCTAGTTGAAGAGCAGCATGGAAAGAACAAGGTTTTGGTTTCCTTTAACTGCGAGACGCTGAAATCCGATGCAGCAGCGGAAGATCATATCAGGAAATTTCTGCCCAAATTAGCCGGCCTAGATGCCGTTGTCAACATCGGTAGGATGACAATTTCGGGGTTGGACTTTGAAGCGGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.24

Weight (kDa)

4.85

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	124, 419, 515
AclWI	GGATC	1 cut(s)	348
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	437
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	238, 350, 512
AjnI	CCWGG	1 cut(s)	126
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	389
AlwI	GGATC	1 cut(s)	348
AoxI	GGCC	5 cut(s)	72, 109, 151, 277, 457
ApeKI	GCWGC	5 cut(s)	189, 287, 355, 413, 416
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	201, 274, 367, 425, 428
BccI	CCATC	1 cut(s)	55
BceAI	ACGGC	1 cut(s)	452
BciT130I	CCWGG	1 cut(s)	128
BclI	TGATCA	2 cut(s)	213, 307
BcnI	CCSGG	1 cut(s)	292
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	344, 461
BisI	GCNGC	5 cut(s)	190, 288, 356, 414, 417
BlsI	GCNGC	5 cut(s)	191, 289, 357, 415, 418
Bme1390I	CCNGG	2 cut(s)	128, 292
Bme18I	GGWCC	1 cut(s)	99
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	3 cut(s)	100, 101, 163
BmrFI	CCNGG	2 cut(s)	128, 292
BmsI	GCATC	3 cut(s)	274, 400, 454
BoxI	GACNNNNGTC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	455
BseBI	CCWGG	1 cut(s)	128
BseGI	GGATG	4 cut(s)	10, 117, 337, 492
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	341
BseXI	GCAGC	5 cut(s)	201, 274, 367, 425, 428
BsgI	GTGCAG	2 cut(s)	208, 292
BshFI	GGCC	5 cut(s)	74, 111, 153, 279, 459
BsiSI	CCGG	3 cut(s)	108, 292, 456
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	1 cut(s)	389
BsmBI	CGTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	5 cut(s)	74, 111, 153, 279, 459
Bsp143I	GATC	4 cut(s)	213, 307, 340, 424
BspACI	CCGC	3 cut(s)	124, 419, 515
BspANI	GGCC	5 cut(s)	74, 111, 153, 279, 459
BspLI	GGNNCC	3 cut(s)	100, 101, 163
BspPI	GGATC	1 cut(s)	348
BspQI	GCTCTTC	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	455
BssMI	GATC	4 cut(s)	213, 307, 340, 424
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	222, 457
BstF5I	GGATG	4 cut(s)	10, 117, 337, 492
BstKTI	GATC	4 cut(s)	216, 310, 343, 427
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	4 cut(s)	213, 307, 340, 424
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 195
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	177
BstPAI	GACNNNNGTC	1 cut(s)	207
BstSCI	CCNGG	2 cut(s)	126, 290
BstV1I	GCAGC	5 cut(s)	201, 274, 367, 425, 428
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	74, 111, 153, 279, 459
BtgZI	GCGATG	1 cut(s)	74
BtsCI	GGATG	4 cut(s)	10, 117, 337, 492
Cac8I	GCNNGC	2 cut(s)	222, 457
Cfr10I	RCCGGY	1 cut(s)	455
Cfr13I	GGNCC	1 cut(s)	99
CseI	GACGC	1 cut(s)	406
CviAII	CATG	6 cut(s)	93, 174, 281, 311, 317, 359
CviJI	RGCY	7 cut(s)	74, 111, 153, 220, 279, 455, 459
CviKI_1	RGCY	7 cut(s)	74, 111, 153, 220, 279, 455, 459
DpnI	GATC	4 cut(s)	215, 309, 342, 426
DpnII	GATC	4 cut(s)	213, 307, 340, 424
EaeI	YGGCCR	1 cut(s)	109
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	140
EcoO109I	RGGNCCY	1 cut(s)	99
EcoRII	CCWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	389
FaeI	CATG	6 cut(s)	96, 177, 284, 314, 320, 362
FaiI	YATR	8 cut(s)	94, 175, 230, 282, 312, 318, 360, 429
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	6 cut(s)	92, 173, 280, 310, 316, 358
FbaI	TGATCA	2 cut(s)	213, 307
Fnu4HI	GCNGC	5 cut(s)	190, 288, 356, 414, 417
FokI	GGATG	4 cut(s)	17, 104, 344, 499
Fsp4HI	GCNGC	5 cut(s)	190, 288, 356, 414, 417
FspBI	CTAG	2 cut(s)	344, 461
GluI	GCNGC	5 cut(s)	190, 288, 356, 414, 417
HaeIII	GGCC	5 cut(s)	74, 111, 153, 279, 459
HapII	CCGG	3 cut(s)	108, 292, 456
HgaI	GACGC	1 cut(s)	406
Hin1II	CATG	6 cut(s)	96, 177, 284, 314, 320, 362
HincII	GTYRAC	2 cut(s)	139, 475
HindII	GTYRAC	2 cut(s)	139, 475
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	2 cut(s)	32, 131
HpaI	GTTAAC	1 cut(s)	139
HpaII	CCGG	3 cut(s)	108, 292, 456
Hpy166II	GTNNAC	2 cut(s)	139, 475
Hpy188I	TCNGA	2 cut(s)	213, 409
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	2 cut(s)	139, 475
HpyAV	CCTTC	2 cut(s)	59, 164
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	5 cut(s)	189, 224, 273, 298, 413
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 195
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	6 cut(s)	96, 177, 284, 314, 320, 362
KflI	GGGWCCC	1 cut(s)	99
KroI	GCCGGC	1 cut(s)	455
KroNI	GCCGGC	1 cut(s)	457
Ksp22I	TGATCA	2 cut(s)	213, 307
KspAI	GTTAAC	1 cut(s)	139
Kzo9I	GATC	4 cut(s)	213, 307, 340, 424
LguI	GCTCTTC	1 cut(s)	345
LpnPI	CCDG	8 cut(s)	113, 121, 140, 143, 178, 305, 418, 469
Lsp1109I	GCAGC	5 cut(s)	201, 274, 367, 425, 428
LweI	GCATC	3 cut(s)	274, 400, 454
MaeI	CTAG	2 cut(s)	344, 461
MaeII	ACGT	1 cut(s)	141
MalI	GATC	4 cut(s)	215, 309, 342, 426
MboI	GATC	4 cut(s)	213, 307, 340, 424
MboII	GAAGA	3 cut(s)	256, 362, 434
MflI	RGATCY	1 cut(s)	340
MluCI	AATT	3 cut(s)	437, 449, 492
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	483
MroNI	GCCGGC	1 cut(s)	455
MseI	TTAA	2 cut(s)	138, 387
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	108, 292, 456
MspR9I	CCNGG	2 cut(s)	128, 292
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	80, 195
NaeI	GCCGGC	1 cut(s)	457
NciI	CCSGG	1 cut(s)	292
NdeII	GATC	4 cut(s)	213, 307, 340, 424
NgoMIV	GCCGGC	1 cut(s)	455
NlaIII	CATG	6 cut(s)	96, 177, 284, 314, 320, 362
NlaIV	GGNNCC	3 cut(s)	100, 101, 163
NspI	RCATGY	1 cut(s)	177
PciSI	GCTCTTC	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	191, 289, 357, 415, 418
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	99
PshAI	GACNNNNGTC	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	100, 101, 163
PspPI	GGNCC	1 cut(s)	99
PspPPI	RGGWCCY	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	340
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	345
SaqAI	TTAA	2 cut(s)	138, 387
SatI	GCNGC	5 cut(s)	190, 288, 356, 414, 417
Sau3AI	GATC	4 cut(s)	213, 307, 340, 424
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	128, 292
SetI	ASST	4 cut(s)	43, 144, 222, 375
SfaNI	GCATC	3 cut(s)	274, 400, 454
SinI	GGWCC	1 cut(s)	99
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	437, 449, 492
SsiI	CCGC	3 cut(s)	124, 419, 515
SspMI	CTAG	2 cut(s)	344, 461
StyD4I	CCNGG	2 cut(s)	126, 290
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	1 cut(s)	144
TasI	AATT	3 cut(s)	437, 449, 492
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	2 cut(s)	138, 387
Tru9I	TTAA	2 cut(s)	138, 387
TseI	GCWGC	5 cut(s)	189, 287, 355, 413, 416
TspDTI	ATGAA	2 cut(s)	21, 106
TspGWI	ACGGA	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	1 cut(s)	437
XceI	RCATGY	1 cut(s)	177
XspI	CTAG	2 cut(s)	344, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.