RchiOBHm_Chr2g0166501

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
81138733 .. 81140671
1939 bp
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UTR
Exon/CDS
Intron
PRQ53438

Sequence Viewer

Length: 579 bp
ATGCGGTCTGGCCTTTGCCACCAACTCTTTTCAGTCTCTCCACTCTCCTCTGTGCAGAAGCAAATGGATGAAGGTGGCGAAGTGGAGTCAAAATTAGGGGAGGTAATGGAAGGAATAGCTTCAATAGCATTGTTACCATGTGGGTCTATATCAGGCCATTTCATCAAAGTGAATGATTCCACCAACATTTGCTATGGTCTTCATGGAACTGAGTTGGCTTGTGAAAAGGAGTGTAGCAGGGGAGAAGATTATCGTCTGATCAAGCTTGCAATCATAGATTACAATAAAAAGAAGGAGAAAGTTGTTGTTGTGGAGTGTAGAGGACATGATGCTGCTAGGTTGAATAGCGTCGATCATGCTCATGGTTGGGAGAAGGATGTCGTAGATATGGTTGATGAACTGCATGGGAAGGACAAGATTCTGGTTTCGTTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGCCCAAACTTTCTGGCCTAGATGCTGTTGTCAACATTGGTAAGATGAGCATTGCCGGCTTGGACTTCGAAGCAGATAAGCAGAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.05

Weight (kDa)

5.47

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AgsI TTSAA 3 cut(s) 123, 343, 433
AluBI AGCT 2 cut(s) 119, 265
AluI AGCT 2 cut(s) 119, 265
Alw26I GTCTC 2 cut(s) 40, 434
AoxI GGCC 3 cut(s) 10, 154, 502
ApeKI GCWGC 2 cut(s) 332, 461
Asp700I GAANNNNTTC 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 555
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 319, 473
BclI TGATCA 1 cut(s) 258
BcoDI GTCTC 2 cut(s) 40, 434
BfaI CTAG 2 cut(s) 336, 506
BisI GCNGC 2 cut(s) 333, 462
BlsI GCNGC 2 cut(s) 334, 463
BmsI GCATC 2 cut(s) 319, 499
BpiI GAAGAC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 555
Bse118I RCCGGY 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 537
BseGI GGATG 2 cut(s) 73, 382
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 1 cut(s) 201
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 319, 473
BsgI GTGCAG 1 cut(s) 74
BshFI GGCC 3 cut(s) 12, 156, 504
BsiSI CCGG 1 cut(s) 543
BsmAI GTCTC 2 cut(s) 40, 434
BsnI GGCC 3 cut(s) 12, 156, 504
Bsp119I TTCGAA 1 cut(s) 555
Bsp143I GATC 3 cut(s) 258, 352, 469
BspACI CCGC 1 cut(s) 4
BspANI GGCC 3 cut(s) 12, 156, 504
BspCNI CTCAG 1 cut(s) 202
BspT104I TTCGAA 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 537
BsrFI RCCGGY 1 cut(s) 542
BssAI RCCGGY 1 cut(s) 542
BssMI GATC 3 cut(s) 258, 352, 469
Bst4CI ACNGT 1 cut(s) 437
BstBI TTCGAA 1 cut(s) 555
BstC8I GCNNGC 2 cut(s) 267, 544
BstDEI CTNAG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 73, 382
BstKTI GATC 3 cut(s) 261, 355, 472
BstMAI GTCTC 2 cut(s) 40, 434
BstMBI GATC 3 cut(s) 258, 352, 469
BstMWI GCNNNNNNNGC 2 cut(s) 125, 543
BstV1I GCAGC 2 cut(s) 319, 473
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 3 cut(s) 12, 156, 504
BtsCI GGATG 2 cut(s) 73, 382
BtsIMutI CAGTG 1 cut(s) 443
Cac8I GCNNGC 2 cut(s) 267, 544
Cfr10I RCCGGY 1 cut(s) 542
CseI GACGC 1 cut(s) 337
CviAII CATG 6 cut(s) 138, 203, 326, 356, 362, 404
CviJI RGCY 7 cut(s) 12, 119, 156, 218, 265, 504, 546
CviKI_1 RGCY 7 cut(s) 12, 119, 156, 218, 265, 504, 546
DdeI CTNAG 1 cut(s) 210
DpnI GATC 3 cut(s) 260, 354, 471
DpnII GATC 3 cut(s) 258, 352, 469
FaeI CATG 6 cut(s) 141, 206, 329, 359, 365, 407
FatI CATG 6 cut(s) 137, 202, 325, 355, 361, 403
FbaI TGATCA 1 cut(s) 258
Fnu4HI GCNGC 2 cut(s) 333, 462
FokI GGATG 2 cut(s) 80, 389
Fsp4HI GCNGC 2 cut(s) 333, 462
FspBI CTAG 2 cut(s) 336, 506
GluI GCNGC 2 cut(s) 333, 462
HaeIII GGCC 3 cut(s) 12, 156, 504
HapII CCGG 1 cut(s) 543
HgaI GACGC 1 cut(s) 337
Hin1II CATG 6 cut(s) 141, 206, 329, 359, 365, 407
HincII GTYRAC 1 cut(s) 520
HindII GTYRAC 1 cut(s) 520
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 86, 176, 418
HpaII CCGG 1 cut(s) 543
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 2 cut(s) 258, 454
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 5 cut(s) 65, 104, 286, 367, 403
HpyCH4III ACNGT 1 cut(s) 437
HpyCH4V TGCA 3 cut(s) 55, 269, 403
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 543
HpyF3I CTNAG 1 cut(s) 210
Hsp92II CATG 6 cut(s) 141, 206, 329, 359, 365, 407
KroI GCCGGC 1 cut(s) 542
KroNI GCCGGC 1 cut(s) 544
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 3 cut(s) 258, 352, 469
LpnPI CCDG 5 cut(s) 138, 223, 407, 486, 556
Lsp1109I GCAGC 2 cut(s) 319, 473
LweI GCATC 2 cut(s) 319, 499
MaeI CTAG 2 cut(s) 336, 506
MaeIII GTNAC 1 cut(s) 132
MalI GATC 3 cut(s) 260, 354, 471
MboI GATC 3 cut(s) 258, 352, 469
MboII GAAGA 3 cut(s) 191, 257, 479
MluCI AATT 1 cut(s) 92
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 3 cut(s) 58, 94, 314
MroNI GCCGGC 1 cut(s) 542
MroXI GAANNNNTTC 1 cut(s) 118
MslI CAYNNNNRTG 2 cut(s) 167, 360
MspI CCGG 1 cut(s) 543
MwoI GCNNNNNNNGC 2 cut(s) 125, 543
NaeI GCCGGC 1 cut(s) 544
NdeII GATC 3 cut(s) 258, 352, 469
NgoMIV GCCGGC 1 cut(s) 542
NlaIII CATG 6 cut(s) 141, 206, 329, 359, 365, 407
NspV TTCGAA 1 cut(s) 555
PdiI GCCGGC 1 cut(s) 544
PdmI GAANNNNTTC 1 cut(s) 118
PfeI GAWTC 2 cut(s) 176, 418
PkrI GCNGC 2 cut(s) 334, 463
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 167, 360
SatI GCNGC 2 cut(s) 333, 462
Sau3AI GATC 3 cut(s) 258, 352, 469
SchI GAGTC 1 cut(s) 95
SetI ASST 5 cut(s) 76, 105, 121, 267, 341
SfaNI GCATC 2 cut(s) 319, 499
SfuI TTCGAA 1 cut(s) 555
SmiMI CAYNNNNRTG 2 cut(s) 167, 360
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 4
SspMI CTAG 2 cut(s) 336, 506
TaaI ACNGT 1 cut(s) 437
TaqI TCGA 2 cut(s) 351, 555
TasI AATT 1 cut(s) 92
TfiI GAWTC 2 cut(s) 176, 418
TscAI CASTG 1 cut(s) 450
TseI GCWGC 2 cut(s) 332, 461
TspDTI ATGAA 4 cut(s) 84, 151, 191, 411
TspRI CASTG 1 cut(s) 450
XmnI GAANNNNTTC 1 cut(s) 118
XspI CTAG 2 cut(s) 336, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.