Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Forward (+)

76833335 .. 76838763

Gene Structure 5429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGTTCATTGGCCCCACCGGTGTAGGGAAGACAAAACTAGCCAAGACCCTTGCTTCCTACATGTTCAACACTGAAGAAGCTCTTGTTAGAATTGATATGAGTGAGTACATGGAAAAACATGTTGTCTTAAGACTGATGGGTGCTCCACCTGGCTATGTGGGGTACGAGGATGGAGGACAGCTGACAGAGGTTGTTCGCTGGAGGCCATATTCAGTTATCCTGTTTGACGAGATTGAAAAGTACATAATAAACGGAGATGATGACGTCTCGCCAAAGGAGTTGGGTTGTGAAACTATAAAGGAGCGGATGATGGAGGCTGCAAGGACCGTATTTCACCTTGAGGTCATGAATCGTGTTGACGAGTACATAGTGTTCCAGCCCTTGGACCATGAGCAGATAAACAATAATGTCAGGATACAGTTGGAACGAGTCCAGAAGAGAACTGCAGACCGCAAGATGAAAATCCAAGTGAGCGATGCTGCTGTGCAGCTTCTTGGAAGTCTCGGCTACGATCCAAACTACGGTGCCAGGCCAGTGAAGCGAGTGATTCAGCAATATGTGGAAAATGAGCTTGCCAAGGGTATCTTGAGAGGAGAGTTCAAAGAAGAAGATTGTCCCTTAGTCTCTCCACCCTCCTCTGTGCAGAAGCAAATGGATGAAGGTGGCGAACTGGAATCAGTAGGGGAGGTAATGGAAGGAGTGGCTTCAATAGCTTTATTACCATGTGGGTCTATATCAGGCCATTTCATCAAAGTGAATGATTCCACCAACATCTGCTATGGTCTTCATGGAACTGAGTTGTCTTGTGAAAAGGAGTGTAGCAGGGGAGAGGATTATCGTCTGATCAAGCTTGCAATCATAGACTACAGTAAAAAGAAGGAGAAAGTTGTTGTTGTGGAGTGTAGAGGACATGATGCTGCTAGGTTGAATAGCGTCGATCATGCTCATGGTTGGGAGAAGGACGTCGTAGATATGGTTGATGAACAGCATGGGAAGGACAAGATTGTGGTTTCATTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGCCCAAACTAGCTGGTCTAGATGCTGTTGTCAACATTGGTAAGATGAGCATTGCCGGCTTGGACTTCGAAGCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

385

Amino Acids

42.98

Weight (kDa)

5.12

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	1 - 80	2.3e-32	AAA domain (Cdc48 subfamily)
AAA	PF00004	1 - 85	8.8e-07	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	128 - 204	6.5e-24	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	267, 966
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	304
AciI	CCGC	2 cut(s)	304, 451
AclWI	GGATC	1 cut(s)	506
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	2 cut(s)	264, 963
AfaI	GTAC	4 cut(s)	107, 164, 242, 365
AfiI	CCNNNNNNNGG	3 cut(s)	24, 382, 521
AflII	CTTAAG	1 cut(s)	127
AflIII	ACRYGT	2 cut(s)	60, 118
AgeI	ACCGGT	1 cut(s)	17
AgsI	TTSAA	6 cut(s)	67, 236, 601, 708, 928, 1018
AjnI	CCWGG	2 cut(s)	148, 527
AluBI	AGCT	7 cut(s)	80, 181, 490, 571, 713, 850, 1085
AluI	AGCT	7 cut(s)	80, 181, 490, 571, 713, 850, 1085
Alw21I	GWGCWC	1 cut(s)	145
Alw26I	GTCTC	4 cut(s)	271, 506, 628, 1019
AlwI	GGATC	1 cut(s)	506
AoxI	GGCC	4 cut(s)	10, 203, 530, 739
ApeKI	GCWGC	5 cut(s)	317, 479, 487, 917, 1046
AsiGI	ACCGGT	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	11, 324, 385
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	1140
AvaII	GGWCC	2 cut(s)	324, 385
BanI	GGYRCC	1 cut(s)	524
BbsI	GAAGAC	2 cut(s)	35, 776
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	5 cut(s)	304, 466, 499, 904, 1058
BccI	CCATC	3 cut(s)	130, 164, 304
BciT130I	CCWGG	2 cut(s)	150, 529
BciVI	GTATCC	1 cut(s)	408
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	4 cut(s)	271, 506, 628, 1019
BfaI	CTAG	4 cut(s)	38, 921, 1082, 1091
BfmI	CTRYAG	2 cut(s)	444, 865
BfrI	CTTAAG	1 cut(s)	127
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	318, 480, 488, 918, 1047
BlsI	GCNGC	5 cut(s)	319, 481, 489, 919, 1048
Bme1390I	CCNGG	2 cut(s)	150, 529
Bme18I	GGWCC	2 cut(s)	324, 385
BmgT120I	GGNCC	3 cut(s)	11, 324, 385
BmiI	GGNNCC	2 cut(s)	13, 526
BmrFI	CCNGG	2 cut(s)	150, 529
BmsI	GCATC	3 cut(s)	466, 904, 1084
BpiI	GAAGAC	2 cut(s)	35, 776
BpmI	CTGGAG	1 cut(s)	220
Bpu14I	TTCGAA	1 cut(s)	1140
BpuEI	CTTGAG	2 cut(s)	359, 607
BsaBI	GATNNNNATC	1 cut(s)	461
BsaHI	GRCGYC	2 cut(s)	264, 963
BsaJI	CCNNGG	2 cut(s)	381, 576
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 382, 521
Bse118I	RCCGGY	2 cut(s)	17, 1127
Bse1I	ACTGG	2 cut(s)	533, 675
Bse3DI	GCAATG	1 cut(s)	1122
Bse8I	GATNNNNATC	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	150, 529
BseDI	CCNNGG	2 cut(s)	381, 576
BseGI	GGATG	3 cut(s)	175, 312, 661
BseJI	GATNNNNATC	1 cut(s)	461
BseLI	CCNNNNNNNGG	3 cut(s)	24, 382, 521
BseMI	GCAATG	1 cut(s)	1122
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	2 cut(s)	533, 675
BseRI	GAGGAG	2 cut(s)	606, 625
BseXI	GCAGC	5 cut(s)	304, 466, 499, 904, 1058
BsgI	GTGCAG	2 cut(s)	506, 662
BshFI	GGCC	4 cut(s)	12, 205, 532, 741
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	18, 1128
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	3 cut(s)	24, 382, 521
BsmAI	GTCTC	4 cut(s)	271, 506, 628, 1019
BsmBI	CGTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	12, 205, 532, 741
Bsp119I	TTCGAA	1 cut(s)	1140
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	4 cut(s)	511, 843, 937, 1054
BspACI	CCGC	2 cut(s)	304, 451
BspANI	GGCC	4 cut(s)	12, 205, 532, 741
BspCNI	CTCAG	1 cut(s)	787
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	2 cut(s)	13, 526
BspMAI	CTGCAG	1 cut(s)	448
BspPI	GGATC	1 cut(s)	506
BspT104I	TTCGAA	1 cut(s)	1140
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	127
BsrBI	CCGCTC	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	1122
BsrFI	RCCGGY	2 cut(s)	17, 1127
BsrI	ACTGG	2 cut(s)	533, 675
BssAI	RCCGGY	2 cut(s)	17, 1127
BssECI	CCNNGG	2 cut(s)	381, 576
BssMI	GATC	4 cut(s)	511, 843, 937, 1054
BssNI	GRCGYC	2 cut(s)	264, 963
BssT1I	CCWWGG	2 cut(s)	381, 576
Bst2UI	CCWGG	2 cut(s)	150, 529
Bst4CI	ACNGT	5 cut(s)	328, 420, 524, 869, 1022
Bst6I	CTCTTC	1 cut(s)	431
BstACI	GRCGYC	2 cut(s)	264, 963
BstAFI	CTTAAG	1 cut(s)	127
BstBI	TTCGAA	1 cut(s)	1140
BstC8I	GCNNGC	3 cut(s)	573, 852, 1129
BstDEI	CTNAG	2 cut(s)	619, 795
BstF5I	GGATG	3 cut(s)	175, 312, 661
BstKTI	GATC	4 cut(s)	514, 846, 940, 1057
BstMAI	GTCTC	4 cut(s)	271, 506, 628, 1019
BstMBI	GATC	4 cut(s)	511, 843, 937, 1054
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 710, 1128
BstNI	CCWGG	2 cut(s)	150, 529
BstNSI	RCATGY	2 cut(s)	64, 122
BstSCI	CCNGG	2 cut(s)	148, 527
BstSFI	CTRYAG	2 cut(s)	444, 865
BstV1I	GCAGC	5 cut(s)	304, 466, 499, 904, 1058
BstV2I	GAAGAC	2 cut(s)	35, 776
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	12, 205, 532, 741
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	3 cut(s)	175, 312, 661
BtsIMutI	CAGTG	3 cut(s)	69, 540, 1028
Cac8I	GCNNGC	3 cut(s)	573, 852, 1129
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	2 cut(s)	17, 1127
Cfr13I	GGNCC	3 cut(s)	11, 324, 385
CseI	GACGC	1 cut(s)	922
Csp6I	GTAC	4 cut(s)	106, 163, 241, 364
CspAI	ACCGGT	1 cut(s)	17
CviQI	GTAC	4 cut(s)	106, 163, 241, 364
DdeI	CTNAG	2 cut(s)	619, 795
DpnI	GATC	4 cut(s)	513, 845, 939, 1056
DpnII	GATC	4 cut(s)	511, 843, 937, 1054
Eam1104I	CTCTTC	1 cut(s)	431
EarI	CTCTTC	1 cut(s)	431
Eco130I	CCWWGG	2 cut(s)	381, 576
Eco47I	GGWCC	2 cut(s)	324, 385
Eco57I	CTGAAG	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	148, 527
EcoT14I	CCWWGG	2 cut(s)	381, 576
ErhI	CCWWGG	2 cut(s)	381, 576
Esp3I	CGTCTC	1 cut(s)	271
FalI	AAGNNNNNCTT	4 cut(s)	66, 98, 569, 601
FaqI	GGGAC	1 cut(s)	600
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	5 cut(s)	318, 480, 488, 918, 1047
FokI	GGATG	3 cut(s)	182, 319, 668
Fsp4HI	GCNGC	5 cut(s)	318, 480, 488, 918, 1047
FspBI	CTAG	4 cut(s)	38, 921, 1082, 1091
GluI	GCNGC	5 cut(s)	318, 480, 488, 918, 1047
GsuI	CTGGAG	1 cut(s)	220
HaeIII	GGCC	4 cut(s)	12, 205, 532, 741
HapII	CCGG	2 cut(s)	18, 1128
HgaI	GACGC	1 cut(s)	922
Hin1I	GRCGYC	2 cut(s)	264, 963
HincII	GTYRAC	2 cut(s)	358, 1105
HindII	GTYRAC	2 cut(s)	358, 1105
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	5 cut(s)	349, 429, 547, 674, 761
HpaII	CCGG	2 cut(s)	18, 1128
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	358, 1105
Hpy188I	TCNGA	2 cut(s)	843, 1039
Hpy188III	TCNNGA	5 cut(s)	346, 412, 433, 586, 1091
Hpy8I	GTNNAC	2 cut(s)	358, 1105
Hpy99I	CGWCG	2 cut(s)	938, 968
HpyAV	CCTTC	5 cut(s)	653, 689, 871, 952, 988
HpyCH4III	ACNGT	5 cut(s)	328, 420, 524, 869, 1022
HpyCH4IV	ACGT	2 cut(s)	264, 963
HpyCH4V	TGCA	5 cut(s)	320, 446, 487, 643, 854
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 710, 1128
HpyF3I	CTNAG	2 cut(s)	619, 795
HpySE526I	ACGT	2 cut(s)	264, 963
Hsp92I	GRCGYC	2 cut(s)	264, 963
KroI	GCCGGC	1 cut(s)	1127
KroNI	GCCGGC	1 cut(s)	1129
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	4 cut(s)	511, 843, 937, 1054
LmnI	GCTCC	2 cut(s)	148, 301
Lsp1109I	GCAGC	5 cut(s)	304, 466, 499, 904, 1058
LweI	GCATC	3 cut(s)	466, 904, 1084
MaeI	CTAG	4 cut(s)	38, 921, 1082, 1091
MaeII	ACGT	2 cut(s)	264, 963
MalI	GATC	4 cut(s)	513, 845, 939, 1056
MbiI	CCGCTC	1 cut(s)	304
MboI	GATC	4 cut(s)	511, 843, 937, 1054
MboII	GAAGA	7 cut(s)	40, 86, 448, 617, 620, 776, 1064
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	438
MmeI	TCCRAC	1 cut(s)	402
MroNI	GCCGGC	1 cut(s)	1127
MseI	TTAA	1 cut(s)	128
MslI	CAYNNNNRTG	2 cut(s)	752, 945
MspA1I	CMGCKG	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	127
MspI	CCGG	2 cut(s)	18, 1128
MspR9I	CCNGG	2 cut(s)	150, 529
MvaI	CCWGG	2 cut(s)	150, 529
MwoI	GCNNNNNNNGC	3 cut(s)	538, 710, 1128
NaeI	GCCGGC	1 cut(s)	1129
NdeII	GATC	4 cut(s)	511, 843, 937, 1054
NgoMIV	GCCGGC	1 cut(s)	1127
NlaIV	GGNNCC	2 cut(s)	13, 526
NmeAIII	GCCGAG	1 cut(s)	483
NspI	RCATGY	2 cut(s)	64, 122
NspV	TTCGAA	1 cut(s)	1140
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	2 cut(s)	60, 118
PdiI	GCCGGC	1 cut(s)	1129
PfeI	GAWTC	4 cut(s)	349, 547, 674, 761
PflMI	CCANNNNNTGG	1 cut(s)	382
PinAI	ACCGGT	1 cut(s)	17
PkrI	GCNGC	5 cut(s)	319, 481, 489, 919, 1048
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PscI	ACATGT	2 cut(s)	60, 118
Psp6I	CCWGG	2 cut(s)	148, 527
PspGI	CCWGG	2 cut(s)	148, 527
PspN4I	GGNNCC	2 cut(s)	13, 526
PspPI	GGNCC	3 cut(s)	11, 324, 385
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
PstI	CTGCAG	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	181
RsaI	GTAC	4 cut(s)	107, 164, 242, 365
RsaNI	GTAC	4 cut(s)	106, 163, 241, 364
RseI	CAYNNNNRTG	2 cut(s)	752, 945
SaqAI	TTAA	1 cut(s)	128
SatI	GCNGC	5 cut(s)	318, 480, 488, 918, 1047
Sau3AI	GATC	4 cut(s)	511, 843, 937, 1054
Sau96I	GGNCC	3 cut(s)	11, 324, 385
SchI	GAGTC	1 cut(s)	438
ScrFI	CCNGG	2 cut(s)	150, 529
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	466, 904, 1084
SfcI	CTRYAG	2 cut(s)	444, 865
SfuI	TTCGAA	1 cut(s)	1140
SgrAI	CRCCGGYG	1 cut(s)	17
SinI	GGWCC	2 cut(s)	324, 385
SmiMI	CAYNNNNRTG	2 cut(s)	752, 945
SmlI	CTYRAG	3 cut(s)	127, 338, 586
SmoI	CTYRAG	3 cut(s)	127, 338, 586
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	2 cut(s)	304, 451
SspMI	CTAG	4 cut(s)	38, 921, 1082, 1091
StyD4I	CCNGG	2 cut(s)	148, 527
StyI	CCWWGG	2 cut(s)	381, 576
TaaI	ACNGT	5 cut(s)	328, 420, 524, 869, 1022
TaiI	ACGT	2 cut(s)	267, 966
TaqI	TCGA	2 cut(s)	936, 1140
TasI	AATT	1 cut(s)	90
TatI	WGTACW	3 cut(s)	105, 240, 363
TfiI	GAWTC	4 cut(s)	349, 547, 674, 761
Tru1I	TTAA	1 cut(s)	128
Tru9I	TTAA	1 cut(s)	128
TscAI	CASTG	3 cut(s)	76, 540, 1035
TseI	GCWGC	5 cut(s)	317, 479, 487, 917, 1046
TspDTI	ATGAA	7 cut(s)	362, 473, 672, 736, 776, 996, 1002
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	3 cut(s)	76, 540, 1035
Van91I	CCANNNNNTGG	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	127
VpaK11BI	GGWCC	2 cut(s)	324, 385
XbaI	TCTAGA	1 cut(s)	1090
XceI	RCATGY	2 cut(s)	64, 122
XspI	CTAG	4 cut(s)	38, 921, 1082, 1091
ZraI	GACGTC	2 cut(s)	265, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.