Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Forward (+)

76623678 .. 76626565

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGGTTAACAGTACATACTTAACGGAGATGATGAAGTATCGCCAAAGGAATGAAGGTGGCGAAGTGGAGTCAAAATTAGGGGAGGTAATGGAAGGAATAGCTTCAATAGCATTGTTACCATGTGGGTCTATATCAGGCCATTTCATCAAAGTGAATGATTCCACCAACATTTGCTATGGTCTTCATGGAACTGAGTTGGCTTGTGAAAAGGAGTGTAGCAGGGGAGAAGATTATCGTCTGATCAAGCTTGCAATCATAGATTACAATAAAAAGAAGGAGAAAGTTGTTGTTGTGGAGTGTAGAGGACATGATGCTGCTAGGTTGAATAGCGTCGATCATGCTCATGGTTGGGAGAAGGATGTCGTAGATATGGTTGATGAACTGCATGGGAAGGACAAGATTCTGGTTTCGTTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGCCCAAACTTGCTGGCCTAGATGCTGTTGTCAACATTGGTAAGATGAGCATTGCCGGCTTGGACTTCGAAGCAGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.37

Weight (kDa)

5.3

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	108, 328, 418
AluBI	AGCT	2 cut(s)	104, 250
AluI	AGCT	2 cut(s)	104, 250
Alw26I	GTCTC	1 cut(s)	419
AoxI	GGCC	2 cut(s)	139, 487
ApeKI	GCWGC	2 cut(s)	317, 446
Asp700I	GAANNNNTTC	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	304, 458
BclI	TGATCA	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	419
BfaI	CTAG	2 cut(s)	321, 491
BisI	GCNGC	2 cut(s)	318, 447
BlsI	GCNGC	2 cut(s)	319, 448
BmsI	GCATC	2 cut(s)	304, 484
BpiI	GAAGAC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	540
Bse118I	RCCGGY	1 cut(s)	527
Bse3DI	GCAATG	1 cut(s)	522
BseGI	GGATG	1 cut(s)	367
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	304, 458
BshFI	GGCC	2 cut(s)	141, 489
BsiSI	CCGG	1 cut(s)	528
BsmAI	GTCTC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	141, 489
Bsp119I	TTCGAA	1 cut(s)	540
Bsp143I	GATC	3 cut(s)	243, 337, 454
BspANI	GGCC	2 cut(s)	141, 489
BspCNI	CTCAG	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	540
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	527
BssAI	RCCGGY	1 cut(s)	527
BssMI	GATC	3 cut(s)	243, 337, 454
Bst4CI	ACNGT	2 cut(s)	14, 422
BstBI	TTCGAA	1 cut(s)	540
BstC8I	GCNNGC	3 cut(s)	252, 487, 529
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	1 cut(s)	367
BstKTI	GATC	3 cut(s)	246, 340, 457
BstMAI	GTCTC	1 cut(s)	419
BstMBI	GATC	3 cut(s)	243, 337, 454
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 528
BstV1I	GCAGC	2 cut(s)	304, 458
BstV2I	GAAGAC	1 cut(s)	176
BsuRI	GGCC	2 cut(s)	141, 489
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	252, 487, 529
Cfr10I	RCCGGY	1 cut(s)	527
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	6 cut(s)	123, 188, 311, 341, 347, 389
CviJI	RGCY	6 cut(s)	104, 141, 203, 250, 489, 531
CviKI_1	RGCY	6 cut(s)	104, 141, 203, 250, 489, 531
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	3 cut(s)	245, 339, 456
DpnII	GATC	3 cut(s)	243, 337, 454
FaeI	CATG	6 cut(s)	126, 191, 314, 344, 350, 392
FatI	CATG	6 cut(s)	122, 187, 310, 340, 346, 388
FbaI	TGATCA	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	318, 447
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	2 cut(s)	318, 447
FspBI	CTAG	2 cut(s)	321, 491
GluI	GCNGC	2 cut(s)	318, 447
HaeIII	GGCC	2 cut(s)	141, 489
HapII	CCGG	1 cut(s)	528
HgaI	GACGC	1 cut(s)	322
Hin1II	CATG	6 cut(s)	126, 191, 314, 344, 350, 392
HincII	GTYRAC	2 cut(s)	10, 505
HindII	GTYRAC	2 cut(s)	10, 505
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	3 cut(s)	71, 161, 403
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	528
Hpy166II	GTNNAC	2 cut(s)	10, 505
Hpy188I	TCNGA	2 cut(s)	243, 439
Hpy8I	GTNNAC	2 cut(s)	10, 505
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	5 cut(s)	50, 89, 271, 352, 388
HpyCH4III	ACNGT	2 cut(s)	14, 422
HpyCH4V	TGCA	2 cut(s)	254, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 528
HpyF3I	CTNAG	1 cut(s)	195
Hsp92II	CATG	6 cut(s)	126, 191, 314, 344, 350, 392
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	243, 337, 454
LpnPI	CCDG	5 cut(s)	123, 208, 392, 471, 541
Lsp1109I	GCAGC	2 cut(s)	304, 458
LweI	GCATC	2 cut(s)	304, 484
MaeI	CTAG	2 cut(s)	321, 491
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	3 cut(s)	245, 339, 456
MboI	GATC	3 cut(s)	243, 337, 454
MboII	GAAGA	3 cut(s)	176, 242, 464
MluCI	AATT	1 cut(s)	77
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	3 cut(s)	79, 299, 541
MroNI	GCCGGC	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	103
MseI	TTAA	2 cut(s)	9, 23
MslI	CAYNNNNRTG	2 cut(s)	152, 345
MspI	CCGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	2 cut(s)	110, 528
NaeI	GCCGGC	1 cut(s)	529
NdeII	GATC	3 cut(s)	243, 337, 454
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	6 cut(s)	126, 191, 314, 344, 350, 392
NspV	TTCGAA	1 cut(s)	540
PdiI	GCCGGC	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	161, 403
PkrI	GCNGC	2 cut(s)	319, 448
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	2 cut(s)	152, 345
SaqAI	TTAA	2 cut(s)	9, 23
SatI	GCNGC	2 cut(s)	318, 447
Sau3AI	GATC	3 cut(s)	243, 337, 454
SchI	GAGTC	1 cut(s)	80
SetI	ASST	5 cut(s)	61, 90, 106, 252, 326
SfaNI	GCATC	2 cut(s)	304, 484
SfuI	TTCGAA	1 cut(s)	540
SmiMI	CAYNNNNRTG	2 cut(s)	152, 345
Sse9I	AATT	1 cut(s)	77
SspMI	CTAG	2 cut(s)	321, 491
TaaI	ACNGT	2 cut(s)	14, 422
TaqI	TCGA	2 cut(s)	336, 540
TasI	AATT	1 cut(s)	77
TatI	WGTACW	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	161, 403
Tru1I	TTAA	2 cut(s)	9, 23
Tru9I	TTAA	2 cut(s)	9, 23
TscAI	CASTG	1 cut(s)	435
TseI	GCWGC	2 cut(s)	317, 446
TspDTI	ATGAA	5 cut(s)	50, 69, 136, 176, 396
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	435
XmnI	GAANNNNTTC	1 cut(s)	103
XspI	CTAG	2 cut(s)	321, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.