Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Forward (+)

24557193 .. 24559200

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGATGAAGGAGAAGAAGTGAAATCAAAAGGAGGGAACTTTGGGGACGTAATGGAAGGAGTGGCTTCAATAGCACTGTTACCATCTGGGGCCATATCAGGCCACTTCATCCACCTCCAAAACTCCATTAGCATTTGCTACGGTCTTTTTGGAACTGAGTTGGCATGTGAAAAGGAGTGTAGCAGGGGTGAGGATTATCGTCTGATCAAGCTTGAAATTATAGACTACATTAGAAAGAAAGAAAAGGTTGTGGTTGTAGAGTGTAGAGGCCATGATGCTGCTAGGTTGCAGAGCATTGATCATGCTCATGGATTTGCCTCTTGTTTGCATTCAATGGTAGGCAGTTGGGAGGAGGATGTTGTGGATCTGGTTGAAGAACAGCATGGGAAGGACAAGCTTTTGGTTTCTTTCAACTGTGAGACTCTGAAATCGGATAAAGCAGCAGAAGATCATATCAAACAGTTTATGCCCAAGTTAGCTGGCCTAGATGCTATTGTCAACATTGGTAAGATGACCATTGCTGGGTTGAACTTCGAAGCAGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

19.94

Weight (kDa)

5.06

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	6 cut(s)	69, 215, 333, 374, 412, 529
AluBI	AGCT	3 cut(s)	211, 397, 479
AluI	AGCT	3 cut(s)	211, 397, 479
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	4 cut(s)	90, 100, 268, 481
ApeKI	GCWGC	2 cut(s)	278, 440
AspS9I	GGNCC	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	200
AsuII	TTCGAA	1 cut(s)	534
BbvI	GCAGC	2 cut(s)	265, 452
BccI	CCATC	1 cut(s)	91
BclI	TGATCA	2 cut(s)	204, 298
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	282, 485
BisI	GCNGC	2 cut(s)	279, 441
BlsI	GCNGC	2 cut(s)	280, 442
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	91
BmsI	GCATC	2 cut(s)	265, 478
Bpu14I	TTCGAA	1 cut(s)	534
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	516
BseGI	GGATG	3 cut(s)	10, 108, 361
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMI	GCAATG	1 cut(s)	516
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	2 cut(s)	265, 452
BseYI	CCCAGC	1 cut(s)	521
BshFI	GGCC	4 cut(s)	92, 102, 270, 483
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	522
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	92, 102, 270, 483
Bsp119I	TTCGAA	1 cut(s)	534
Bsp143I	GATC	4 cut(s)	204, 298, 364, 448
BspANI	GGCC	4 cut(s)	92, 102, 270, 483
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	372
BspT104I	TTCGAA	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	516
BssMI	GATC	4 cut(s)	204, 298, 364, 448
Bst4CI	ACNGT	4 cut(s)	78, 143, 416, 462
BstBI	TTCGAA	1 cut(s)	534
BstC8I	GCNNGC	1 cut(s)	481
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	10, 108, 361
BstKTI	GATC	4 cut(s)	207, 301, 367, 451
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	4 cut(s)	204, 298, 364, 448
BstMWI	GCNNNNNNNGC	1 cut(s)	71
BstNSI	RCATGY	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	265, 452
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuRI	GGCC	4 cut(s)	92, 102, 270, 483
BtsCI	GGATG	3 cut(s)	10, 108, 361
BtsIMutI	CAGTG	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	90
CviAII	CATG	6 cut(s)	165, 272, 302, 308, 383, 546
CviJI	RGCY	8 cut(s)	65, 92, 102, 211, 270, 397, 479, 483
CviKI_1	RGCY	8 cut(s)	65, 92, 102, 211, 270, 397, 479, 483
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	4 cut(s)	206, 300, 366, 450
DpnII	GATC	4 cut(s)	204, 298, 364, 448
FaeI	CATG	6 cut(s)	168, 275, 305, 311, 386, 549
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	6 cut(s)	164, 271, 301, 307, 382, 545
FbaI	TGATCA	2 cut(s)	204, 298
Fnu4HI	GCNGC	2 cut(s)	279, 441
FokI	GGATG	3 cut(s)	17, 95, 368
Fsp4HI	GCNGC	2 cut(s)	279, 441
FspBI	CTAG	2 cut(s)	282, 485
GluI	GCNGC	2 cut(s)	279, 441
GsaI	CCCAGC	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	92, 102, 270, 483
Hin1II	CATG	6 cut(s)	168, 275, 305, 311, 386, 549
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	209, 395
HinfI	GANTC	1 cut(s)	421
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	204, 426, 433
Hpy8I	GTNNAC	1 cut(s)	499
HpyAV	CCTTC	2 cut(s)	50, 382
HpyCH4III	ACNGT	4 cut(s)	78, 143, 416, 462
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	2 cut(s)	289, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	6 cut(s)	168, 275, 305, 311, 386, 549
Ksp22I	TGATCA	2 cut(s)	204, 298
Kzo9I	GATC	4 cut(s)	204, 298, 364, 448
LpnPI	CCDG	6 cut(s)	72, 84, 169, 353, 465, 507
Lsp1109I	GCAGC	2 cut(s)	265, 452
LweI	GCATC	2 cut(s)	265, 478
MaeI	CTAG	2 cut(s)	282, 485
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	4 cut(s)	206, 300, 366, 450
MboI	GATC	4 cut(s)	204, 298, 364, 448
MboII	GAAGA	3 cut(s)	26, 386, 458
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	415
MnlI	CCTC	8 cut(s)	26, 125, 184, 260, 328, 343, 346, 535
MslI	CAYNNNNRTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	71
NdeII	GATC	4 cut(s)	204, 298, 364, 448
NlaIII	CATG	6 cut(s)	168, 275, 305, 311, 386, 549
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	168
NspV	TTCGAA	1 cut(s)	534
PctI	GAATGC	1 cut(s)	328
PkrI	GCNGC	2 cut(s)	280, 442
PleI	GAGTC	1 cut(s)	415
PpsI	GAGTC	1 cut(s)	415
PspFI	CCCAGC	1 cut(s)	521
PspN4I	GGNNCC	1 cut(s)	91
PspPI	GGNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	306
SatI	GCNGC	2 cut(s)	279, 441
Sau3AI	GATC	4 cut(s)	204, 298, 364, 448
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	1 cut(s)	415
SetI	ASST	7 cut(s)	51, 117, 213, 249, 287, 399, 481
SfaNI	GCATC	2 cut(s)	265, 478
SfuI	TTCGAA	1 cut(s)	534
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	216
SspMI	CTAG	2 cut(s)	282, 485
TaaI	ACNGT	4 cut(s)	78, 143, 416, 462
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	534
TasI	AATT	1 cut(s)	216
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	2 cut(s)	278, 440
TspDTI	ATGAA	2 cut(s)	21, 97
TspRI	CASTG	1 cut(s)	81
XceI	RCATGY	1 cut(s)	168
XspI	CTAG	2 cut(s)	282, 485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.