Rh2BG601700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007432
Physical Location & Seq
Forward (+)
82179831 .. 82187954
8124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG601700.1

Sequence Viewer

Length: 516 bp
ATGGATGAAGGTGGTGAAGCGGAGTCAAAAGTAGGGGAGGTAATGGAAGGAGTGGCTTCAATAGCATTGCTACCATGTGGGTCTATATCAGGCCATTTCATCATAGTGAATGATTCCACTAACATTTGCTATGGTCTTCATGGAACTGAGTTGGCTTGTGAAAAGGAGTGTAGCAGGGGAGAAGATTATCGTCTGATCAAGCTTGCAATCATAGATTACAATAAAAAGAAGGAGAAAGTTGTTGTTGTGGAGTGTAGAGGACATGATGCTGCTAGGTTGAATAGCGTCGATCATGCTCATGGTTGGGAGAAGGATGTCGTAGATATGGTTGATGAACTGCATGGGAAGGACAAGATTCTGGTTTCGTTCAACTGTGAGACACTGAAATCTGACAAAGCAGCAGAAGATCATATCAGCAAGTTTTTGCCCAAACTTTCTGGCCTAGATGCTGTTGTCAACATTGGTAAGATGAGCATTGCCGGCTTGGACTTCGAAGCAGATAAGCAGAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.66

Weight (kDa)

5.04

Isoelectric Point (pI)

24.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 60, 280, 370
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 371
AoxI GGCC 2 cut(s) 91, 439
ApeKI GCWGC 2 cut(s) 269, 398
AsuHPI GGTGA 1 cut(s) 26
AsuII TTCGAA 1 cut(s) 492
BbsI GAAGAC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 256, 410
BclI TGATCA 1 cut(s) 195
BcoDI GTCTC 1 cut(s) 371
BfaI CTAG 2 cut(s) 273, 443
BisI GCNGC 2 cut(s) 270, 399
BlsI GCNGC 2 cut(s) 271, 400
BmsI GCATC 2 cut(s) 256, 436
BpiI GAAGAC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 492
Bse118I RCCGGY 1 cut(s) 479
Bse3DI GCAATG 2 cut(s) 65, 474
BseGI GGATG 2 cut(s) 10, 319
BseMI GCAATG 2 cut(s) 65, 474
BseMII CTCAG 1 cut(s) 138
BseXI GCAGC 2 cut(s) 256, 410
BshFI GGCC 2 cut(s) 93, 441
BsiSI CCGG 1 cut(s) 480
BsmAI GTCTC 1 cut(s) 371
BsnI GGCC 2 cut(s) 93, 441
Bsp119I TTCGAA 1 cut(s) 492
Bsp143I GATC 3 cut(s) 195, 289, 406
BspACI CCGC 1 cut(s) 20
BspANI GGCC 2 cut(s) 93, 441
BspCNI CTCAG 1 cut(s) 139
BspT104I TTCGAA 1 cut(s) 492
BsrDI GCAATG 2 cut(s) 65, 474
BsrFI RCCGGY 1 cut(s) 479
BssAI RCCGGY 1 cut(s) 479
BssMI GATC 3 cut(s) 195, 289, 406
Bst4CI ACNGT 1 cut(s) 374
BstBI TTCGAA 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 204, 481
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 10, 319
BstKTI GATC 3 cut(s) 198, 292, 409
BstMAI GTCTC 1 cut(s) 371
BstMBI GATC 3 cut(s) 195, 289, 406
BstMWI GCNNNNNNNGC 2 cut(s) 62, 480
BstV1I GCAGC 2 cut(s) 256, 410
BstV2I GAAGAC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 93, 441
BtsCI GGATG 2 cut(s) 10, 319
BtsIMutI CAGTG 1 cut(s) 380
Cac8I GCNNGC 2 cut(s) 204, 481
Cfr10I RCCGGY 1 cut(s) 479
CseI GACGC 1 cut(s) 274
CviAII CATG 6 cut(s) 75, 140, 263, 293, 299, 341
CviJI RGCY 6 cut(s) 56, 93, 155, 202, 441, 483
CviKI_1 RGCY 6 cut(s) 56, 93, 155, 202, 441, 483
DdeI CTNAG 1 cut(s) 147
DpnI GATC 3 cut(s) 197, 291, 408
DpnII GATC 3 cut(s) 195, 289, 406
FaeI CATG 6 cut(s) 78, 143, 266, 296, 302, 344
FatI CATG 6 cut(s) 74, 139, 262, 292, 298, 340
FbaI TGATCA 1 cut(s) 195
Fnu4HI GCNGC 2 cut(s) 270, 399
FokI GGATG 2 cut(s) 17, 326
Fsp4HI GCNGC 2 cut(s) 270, 399
FspBI CTAG 2 cut(s) 273, 443
GluI GCNGC 2 cut(s) 270, 399
HaeIII GGCC 2 cut(s) 93, 441
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 274
Hin1II CATG 6 cut(s) 78, 143, 266, 296, 302, 344
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 23, 113, 355
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 195, 391
Hpy8I GTNNAC 1 cut(s) 457
Hpy99I CGWCG 1 cut(s) 290
HpyAV CCTTC 4 cut(s) 41, 223, 304, 340
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 206, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 480
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 6 cut(s) 78, 143, 266, 296, 302, 344
KroI GCCGGC 1 cut(s) 479
KroNI GCCGGC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 195
Kzo9I GATC 3 cut(s) 195, 289, 406
LpnPI CCDG 5 cut(s) 75, 160, 344, 423, 493
Lsp1109I GCAGC 2 cut(s) 256, 410
LweI GCATC 2 cut(s) 256, 436
MaeI CTAG 2 cut(s) 273, 443
MalI GATC 3 cut(s) 197, 291, 408
MboI GATC 3 cut(s) 195, 289, 406
MboII GAAGA 3 cut(s) 128, 194, 416
MlyI GAGTC 1 cut(s) 32
MnlI CCTC 2 cut(s) 31, 251
MroNI GCCGGC 1 cut(s) 479
MslI CAYNNNNRTG 2 cut(s) 104, 297
MspI CCGG 1 cut(s) 480
MwoI GCNNNNNNNGC 2 cut(s) 62, 480
NaeI GCCGGC 1 cut(s) 481
NdeII GATC 3 cut(s) 195, 289, 406
NgoMIV GCCGGC 1 cut(s) 479
NlaIII CATG 6 cut(s) 78, 143, 266, 296, 302, 344
NspV TTCGAA 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 481
PfeI GAWTC 2 cut(s) 113, 355
PkrI GCNGC 2 cut(s) 271, 400
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
RseI CAYNNNNRTG 2 cut(s) 104, 297
SatI GCNGC 2 cut(s) 270, 399
Sau3AI GATC 3 cut(s) 195, 289, 406
SchI GAGTC 1 cut(s) 32
SetI ASST 4 cut(s) 13, 42, 204, 278
SfaNI GCATC 2 cut(s) 256, 436
SfuI TTCGAA 1 cut(s) 492
SmiMI CAYNNNNRTG 2 cut(s) 104, 297
SsiI CCGC 1 cut(s) 20
SspMI CTAG 2 cut(s) 273, 443
TaaI ACNGT 1 cut(s) 374
TaqI TCGA 2 cut(s) 288, 492
TfiI GAWTC 2 cut(s) 113, 355
TscAI CASTG 1 cut(s) 387
TseI GCWGC 2 cut(s) 269, 398
TspDTI ATGAA 4 cut(s) 21, 88, 128, 348
TspRI CASTG 1 cut(s) 387
XspI CTAG 2 cut(s) 273, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.