Rorug02G0523500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0007432
Physical Location & Seq
Reverse (-)
65437391 .. 65437657
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0523500.1

Sequence Viewer

Length: 267 bp
ATGGCACAAGGTTTCCTCCAACCCTCGAGAGAAAACAAATATTTTGAAGATTTGGGCCTACATTATATAAGGCAGTTTTGTTCCAGGTCTTTGTTTCAAGTTGAGACGCATTGGAAGACTACTATGCGGTTCAAAATTCATGACCTAGTGCACGATTTAGTAATATCAGTGGCACATTTAGAGTGTTCCACGATTAATTTTCATCGTCAATATGATTTTGAAAAAGTCTGCCTTGTGTCAATATCGACGAAAGACTTGTCCGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

10.42

Weight (kDa)

7.0

Isoelectric Point (pI)

43.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 1 - 54 1.3e-13 Disease resistance protein Winged helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 260
AciI CCGC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 135
AgsI TTSAA 4 cut(s) 47, 98, 133, 221
AjnI CCWGG 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 98
Alw44I GTGCAC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 25
Aor13HI TCCGGA 1 cut(s) 260
AoxI GGCC 1 cut(s) 55
ApaLI GTGCAC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 135
ArsI GACNNNNNNTTYG 1 cut(s) 242
AseI ATTAAT 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 25
BaeGI GKGCMC 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 153
BciT130I CCWGG 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 85
BmeT110I CYCGRG 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 85
BpiI GAAGAC 1 cut(s) 122
BsaWI WCCGGW 1 cut(s) 260
BseAI TCCGGA 1 cut(s) 260
BseBI CCWGG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 153
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 153
BsiHKCI CYCGRG 1 cut(s) 25
BsiSI CCGG 1 cut(s) 261
BsmAI GTCTC 1 cut(s) 98
BsmBI CGTCTC 1 cut(s) 98
BsnI GGCC 1 cut(s) 57
BsoBI CYCGRG 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 153
Bsp13I TCCGGA 1 cut(s) 260
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 57
BspEI TCCGGA 1 cut(s) 260
BspHI TCATGA 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 85
BstMAI GTCTC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 85
BstSCI CCNGG 1 cut(s) 83
BstSLI GKGCMC 1 cut(s) 153
BstV2I GAAGAC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 57
BtsIMutI CAGTG 1 cut(s) 174
CciI TCATGA 1 cut(s) 139
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 115
CviAII CATG 1 cut(s) 140
CviJI RGCY 1 cut(s) 57
CviKI_1 RGCY 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 83
Esp3I CGTCTC 1 cut(s) 98
FaeI CATG 1 cut(s) 143
FaiI YATR 5 cut(s) 66, 68, 125, 141, 213
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 1 cut(s) 139
FspBI CTAG 1 cut(s) 146
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 261
HgaI GACGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 143
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 151
Hpy188III TCNNGA 3 cut(s) 27, 140, 261
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 151
Hsp92II CATG 1 cut(s) 143
Kpn2I TCCGGA 1 cut(s) 260
LpnPI CCDG 2 cut(s) 70, 97
MaeI CTAG 1 cut(s) 146
MboII GAAGA 2 cut(s) 59, 127
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 2 cut(s) 135, 196
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 2 cut(s) 26, 34
MroI TCCGGA 1 cut(s) 260
MseI TTAA 1 cut(s) 195
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NlaIII CATG 1 cut(s) 143
PaeR7I CTCGAG 1 cut(s) 25
PagI TCATGA 1 cut(s) 139
PshBI ATTAAT 1 cut(s) 195
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspPI GGNCC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 153
SetI ASST 3 cut(s) 13, 89, 147
Sfr274I CTCGAG 1 cut(s) 25
SlaI CTCGAG 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 2 cut(s) 135, 196
SsiI CCGC 1 cut(s) 127
SspI AATATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 146
StyD4I CCNGG 1 cut(s) 83
TaqI TCGA 2 cut(s) 26, 245
TasI AATT 2 cut(s) 135, 196
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 128, 191
TspRI CASTG 1 cut(s) 174
VneI GTGCAC 1 cut(s) 149
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 135
XhoI CTCGAG 1 cut(s) 25
XspI CTAG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.