Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007432

Physical Location & Seq

Genomic Coordinates Reverse (-)

3978895 .. 3979498

Gene Structure 604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGTACTCCGTCCACCGAGCTCCAAGAACAAATGCATGAAAGGGACGAGGAAGTGGTGGAGGAATCAGAAGGAGGTAACTTTGGAGAGGCGATGGAAGGAGTGGCCTCAATAGCACTTTTACCATGTGGGTCTCTCTCCGGCCACTTCATCCACCGTCAGGACGCCAGTAACGTCTGCTTCGGCCTTCAGGGAACCGAGTTGGCATGTGAAAAGGAGTGCAGCAGGGGCGAGGATTACCGTCTGATCAAGCTTGCAATCATAGATTACAACTTGTGGAGCAGAGGCCATGATGCTGCCCGGTTGCAGAGCATTGATCATGCTCACGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

4.69

Isoelectric Point (pI)

56.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29280 AT3G29280
fragaria_vesca	FvH4_6g47420
malus_domestica	MD09G1061600.v1.1
prunus_persica	Prupe.3G258600_v2.0.a1 Prupe.3G258600_v2.0.a1
pyrus_communis	pycom111g05190 pycom17g05580
rosa_chinensis	RchiOBHm_Chr2g0166491 RchiOBHm_Chr2g0166501
rosa_laevigata	RLG00000021623
rosa_multiflora	Rmu_co8408345.1_g000001 Rmu_sc0005109.1_g000001 Rmu_sc0012388.1_g000001
rosa_roxburghii	Rroxscaffold_2G00084830
rosa_rugosa	Rorug02G0523400 Rorug02G0523500 Rorug02G0523600 Rorug02G0523700
rosa_samantha	Rh2AG589500 Rh2BG601700 Rh2CG572300 Rh2CG572400 Rh2DG612300
rosa_wichuraiana	Rw2G049140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	160
AluBI	AGCT	2 cut(s)	22, 253
AluI	AGCT	2 cut(s)	22, 253
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	1 cut(s)	138
AoxI	GGCC	4 cut(s)	105, 142, 184, 286
ApeKI	GCWGC	2 cut(s)	222, 296
AsuC2I	CCSGG	1 cut(s)	301
BanII	GRGCYC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	2 cut(s)	234, 283
BccI	CCATC	1 cut(s)	88
BclI	TGATCA	2 cut(s)	246, 316
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	138
BisI	GCNGC	2 cut(s)	223, 297
BlsI	GCNGC	2 cut(s)	224, 298
Bme1390I	CCNGG	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	1 cut(s)	301
BmsI	GCATC	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	301
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	234, 283
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	4 cut(s)	107, 144, 186, 288
BsiHKAI	GWGCWC	1 cut(s)	24
BsiSI	CCGG	2 cut(s)	141, 301
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	107, 144, 186, 288
Bso31I	GGTCTC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	2 cut(s)	246, 316
BspANI	GGCC	4 cut(s)	107, 144, 186, 288
BspLI	GGNNCC	1 cut(s)	196
BspTNI	GGTCTC	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	246, 316
BssNI	GRCGYC	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	158, 242
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	249, 319
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	246, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 228
BstNSI	RCATGY	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	234, 283
BsuRI	GGCC	4 cut(s)	107, 144, 186, 288
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	255
CseI	GACGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	6
CviAII	CATG	5 cut(s)	38, 126, 207, 290, 320
CviJI	RGCY	6 cut(s)	22, 107, 144, 186, 253, 288
CviKI_1	RGCY	6 cut(s)	22, 107, 144, 186, 253, 288
CviQI	GTAC	1 cut(s)	6
DpnI	GATC	2 cut(s)	248, 318
DpnII	GATC	2 cut(s)	246, 316
EaeI	YGGCCR	1 cut(s)	142
Ecl136II	GAGCTC	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	24
Eco31I	GGTCTC	1 cut(s)	138
Eco53kI	GAGCTC	1 cut(s)	22
Eco57I	CTGAAG	1 cut(s)	173
EcoICRI	GAGCTC	1 cut(s)	22
EcoT22I	ATGCAT	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	5 cut(s)	41, 129, 210, 293, 323
FaiI	YATR	6 cut(s)	39, 127, 208, 263, 291, 321
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	37, 125, 206, 289, 319
FbaI	TGATCA	2 cut(s)	246, 316
Fnu4HI	GCNGC	2 cut(s)	223, 297
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	2 cut(s)	223, 297
GluI	GCNGC	2 cut(s)	223, 297
HaeIII	GGCC	4 cut(s)	107, 144, 186, 288
HapII	CCGG	2 cut(s)	141, 301
HgaI	GACGC	1 cut(s)	173
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	41, 129, 210, 293, 323
HindIII	AAGCTT	1 cut(s)	251
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	2 cut(s)	141, 301
Hpy166II	GTNNAC	1 cut(s)	15
Hpy188I	TCNGA	2 cut(s)	70, 246
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	1 cut(s)	15
HpyAV	CCTTC	3 cut(s)	65, 92, 197
HpyCH4III	ACNGT	2 cut(s)	158, 242
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	37, 222, 257, 307
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 228
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	41, 129, 210, 293, 323
Ksp22I	TGATCA	2 cut(s)	246, 316
Kzo9I	GATC	2 cut(s)	246, 316
LmnI	GCTCC	2 cut(s)	27, 279
LpnPI	CCDG	6 cut(s)	146, 154, 176, 181, 211, 314
Lsp1109I	GCAGC	2 cut(s)	234, 283
LweI	GCATC	1 cut(s)	283
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	77, 170
MalI	GATC	2 cut(s)	248, 318
MboI	GATC	2 cut(s)	246, 316
MhlI	GDGCHC	1 cut(s)	24
MnlI	CCTC	7 cut(s)	43, 55, 68, 82, 118, 226, 278
Mph1103I	ATGCAT	1 cut(s)	39
MspI	CCGG	2 cut(s)	141, 301
MspR9I	CCNGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	113, 228
NciI	CCSGG	1 cut(s)	301
NdeII	GATC	2 cut(s)	246, 316
NlaIII	CATG	5 cut(s)	41, 129, 210, 293, 323
NlaIV	GGNNCC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	210
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	224, 298
Psp124BI	GAGCTC	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
SacI	GAGCTC	1 cut(s)	24
SatI	GCNGC	2 cut(s)	223, 297
Sau3AI	GATC	2 cut(s)	246, 316
ScrFI	CCNGG	1 cut(s)	301
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	4 cut(s)	24, 79, 177, 255
SfaNI	GCATC	1 cut(s)	283
SstI	GAGCTC	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	299
TaaI	ACNGT	2 cut(s)	158, 242
TaiI	ACGT	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	65
TseI	GCWGC	2 cut(s)	222, 296
TspDTI	ATGAA	2 cut(s)	54, 139
XceI	RCATGY	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.