AT3G30460

RING-type zinc-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005821
Physical Location & Seq
Forward (+)
12104312 .. 12105111
800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G30460.1

Sequence Viewer

Length: 444 bp
ATGGCTGAGGAGTTTCATCTTCCTCTAAACCTCACCGAACCAGACCAAACTCCGACCGAAGAAGATTTCGAAGCAGACACTACATTAATTGACGACGAATACCTCCGTTACCTCCACTACTTGGATTCACGGAGCAATCATGGAGTCAACACGTTTGGATCTTACGATGAAATCTTTGGTCTAGTTCTCGGTAATTCATCCTCTTGTACGCGGTGGCTTAACGCAGGGGAGGAACTTCCGGTGGTGGAGTTTACGGCTGAGGAAATGATGGAGAGAGGTTTAGTGGTTTGTGCTATATGTAGAGAGGAGCTTGCTGCTAATGAGAGGCTCTCAGAGCTTCCTTGTCGGCATTATTACCATAAAGAGTGTATCTCGAATTGGTTGAGTAATCGGAACACTTGTCCGCTTTGTCGTCATAACGTGGAATTACCCAACCACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

147

Amino Acids

16.94

Weight (kDa)

4.57

Isoelectric Point (pI)

68.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 97 - 138 1.4e-14 Ring finger domain
zf-rbx1 PF12678 97 - 138 1.6e-08 RING-H2 zinc finger domain
zf-C3HC4 PF00097 97 - 137 4.7e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 97 - 137 1.1e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 97 - 124 3.1e-08 RING-like zinc finger
zf-RING_UBOX PF13445 97 - 135 9.3e-07 RING-type zinc-finger
zf-RING_5 PF14634 97 - 139 4.3e-06 zinc-RING finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 211
AciI CCGC 2 cut(s) 211, 404
AclWI GGATC 1 cut(s) 166
AfaI GTAC 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 121, 437
AflIII ACRYGT 1 cut(s) 150
AluBI AGCT 2 cut(s) 310, 337
AluI AGCT 2 cut(s) 310, 337
AlwI GGATC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 314
AseI ATTAAT 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 25
AsuII TTCGAA 1 cut(s) 69
BbvCI CCTCAGC 2 cut(s) 6, 258
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 262
BceAI ACGGC 1 cut(s) 270
BfaI CTAG 1 cut(s) 182
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BplI GAGNNNNNCTC 4 cut(s) 314, 346, 356, 388
Bpu10I CCTNAGC 2 cut(s) 6, 258
Bpu14I TTCGAA 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 437
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 197
BseLI CCNNNNNNNGG 2 cut(s) 121, 437
BseMII CTCAG 2 cut(s) 249, 345
BseRI GAGGAG 2 cut(s) 23, 320
BseXI GCAGC 1 cut(s) 301
Bsh1236I CGCG 1 cut(s) 211
Bsh1285I CGRYCG 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 1 cut(s) 239
BslI CCNNNNNNNGG 2 cut(s) 121, 437
Bsp119I TTCGAA 1 cut(s) 69
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 2 cut(s) 211, 404
BspCNI CTCAG 2 cut(s) 250, 344
BspFNI CGCG 1 cut(s) 211
BspPI GGATC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 69
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 1 cut(s) 158
Bst4CI ACNGT 1 cut(s) 440
BstBI TTCGAA 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 312
BstDEI CTNAG 3 cut(s) 6, 258, 331
BstDSI CCRYGG 1 cut(s) 436
BstF5I GGATG 1 cut(s) 197
BstFNI CGCG 1 cut(s) 211
BstKTI GATC 1 cut(s) 161
BstMBI GATC 1 cut(s) 158
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 334
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 301
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 1 cut(s) 197
Cac8I GCNNGC 1 cut(s) 312
Csp6I GTAC 1 cut(s) 207
CviAII CATG 1 cut(s) 140
CviJI RGCY 6 cut(s) 5, 217, 257, 310, 328, 337
CviKI_1 RGCY 6 cut(s) 5, 217, 257, 310, 328, 337
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 3 cut(s) 6, 258, 331
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
FaeI CATG 1 cut(s) 143
FaiI YATR 5 cut(s) 141, 296, 298, 360, 417
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 182
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 239
Hin1II CATG 1 cut(s) 143
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 2 cut(s) 125, 144
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 2 cut(s) 148, 252
Hpy188I TCNGA 3 cut(s) 54, 334, 393
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 2 cut(s) 148, 252
Hpy99I CGWCG 1 cut(s) 98
HpyCH4III ACNGT 1 cut(s) 440
HpyCH4IV ACGT 2 cut(s) 152, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 334
HpyF3I CTNAG 3 cut(s) 6, 258, 331
HpySE526I ACGT 2 cut(s) 152, 420
Hsp92II CATG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 2 cut(s) 132, 307
LpnPI CCDG 3 cut(s) 54, 210, 252
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 182
MaeII ACGT 2 cut(s) 152, 420
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 3 cut(s) 11, 71, 74
MflI RGATCY 1 cut(s) 158
MluCI AATT 4 cut(s) 87, 193, 376, 425
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 77
MseI TTAA 2 cut(s) 86, 219
MspI CCGG 1 cut(s) 239
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 334
NdeII GATC 1 cut(s) 158
NlaIII CATG 1 cut(s) 143
NspV TTCGAA 1 cut(s) 69
PfeI GAWTC 1 cut(s) 125
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PshBI ATTAAT 1 cut(s) 86
PsuI RGATCY 1 cut(s) 158
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
SaqAI TTAA 2 cut(s) 86, 219
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 158
SchI GAGTC 1 cut(s) 153
SetI ASST 8 cut(s) 33, 105, 114, 155, 280, 312, 339, 423
SfuI TTCGAA 1 cut(s) 69
Sse9I AATT 4 cut(s) 87, 193, 376, 425
SsiI CCGC 2 cut(s) 211, 404
SspMI CTAG 1 cut(s) 182
TaaI ACNGT 1 cut(s) 440
TaiI ACGT 2 cut(s) 155, 423
TaqI TCGA 2 cut(s) 69, 374
TaqII GACCGA 1 cut(s) 71
TasI AATT 4 cut(s) 87, 193, 376, 425
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 2 cut(s) 86, 219
Tru9I TTAA 2 cut(s) 86, 219
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 5, 183, 186
TspGWI ACGGA 2 cut(s) 95, 145
Van91I CCANNNNNTGG 1 cut(s) 121
VspI ATTAAT 1 cut(s) 86
XspI CTAG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.