Rorug02G0020800

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
1675760 .. 1682252
6493 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0020800.1

Sequence Viewer

Length: 1578 bp
ATGGCCAAACTCACTCTCCGAGCAGAAAGCTCCTACCTTTTTTCCCACACCACCTCCACCTCCCACTCCCAGCCCTCTTCTTTCACCTCAGCACCGAAACGCCGTCGTTTGCTGAGCTTCCCTTCGAAGGACAGCTTGAAATTCAGAGTCTTTTGCAGCATTAAGGAGAAGGAGAGCGTCAAGAGAGTCAATGGGCTCCCCGCCGGCGATAAGGTCCACCGGGTCGGGTCGGGTTCGGATTCTGAAGGCGAGTCGGGTCTGGAAAGTGGGTCTGGGGCAGTGGGGTTTGATTTGGATTGGCCTCCGTGGAAGAACATACCTCAGAGATATAAGCTCATTGGCACAACTTCATTGGCCTTTGTTATCTGTAACATGGATAAGGTGAACTTGAGTATTGCTATAATTCCCATGTCGCATCAGTTTGGTTGGAGTTCGTCAGTGGCTGGATTGGTTCAGTCGTCCTTCTTTTGGGGGTATGCTTTGAGTCAATTGCCTGGGGGCTGGCTTGCCAAGATATTTGGTGGGAGAAAAGTTCTTGAGATTGGAGTATTAACTTGGTCATTGGCTACAGCACTTGTTCCTTTCGTTGCTGGATTTACTCCTGGTTTAGTTGTGTCAAGAATTTTGGTAGGGATTGGAGAAGGTGTTTCCCCGTCTGCTGCAACTGACCTTATTGCCAGAACAATACCTTTGGAAGAGCGCTCACGAGCCGTAGCAGTTGTCTTTGGTGGTTTGAGTGTAGGAAGTGTTGCAGGGTTTCTTCTGGCTCCTCCCCTTATCCAAAATCTTGGCTGGGAATCTGTCTTTTACATATTTTCCCTTTTGGGGATAGGTTGGTATGTGGGTTTTCAGTTTCTTGAAGGACAAGCCTCATGGGTTGGATCCCGTTCAGACATGAAGACAGCGCAGCAAACTTCTCCAAAAGAGTTGGGTGACTCGTTGAAGGATGTACCGTGGAAGGCATTTTTCCAAAGTGAAGCTGTTTGGGCAATGATATATGCTCATTTTTGTGGAAGCTGGGGTCATTATACTTGCCTAGCATGGCTTCCTACCTATTTTAGTGAGGAGCTGAACCTGAATTTGACCGAAGCGGCGTGGGTCTCTATCCTTCCTCCGTTGGCGTCAATATTTGTGACTAGCGTTGCATCCCAAATTGCTGATAACTTGATTTCTAGTGGAGTTCAAACCACTACGGTCCGAAAAATGTGCCAAACAATTGCCTTTTTGTCTCCTGCAGCTTGTATGACTCTTTCTTCTCTTGATCTAGGATTGCCCCATTGGGAAGTTGTGGGAATTCTCACTGGTGGTTTAGCCCTTTCGAGCTTTGCAATTTCAGGACTTTATTGTACCCATCAAGATATATCACCCGAATATGCAAGCATACTTTTGGGTATTACCAATACTGTTGGGGCGCTACCTGGAATAGTAGGTGTTGCCCTCACTGGCTATCTACTTGATTCAACTCATTCATGGAGTATGTCATTGTTCATTCCATCAATATTTTTCTACCTGACTGGTACAATTGTTTGGTTGGTGTTTGCCAGCAGTAAGCCTCAAACCTTTACAAAGAGAGATTGA

Protein Analysis

525

Amino Acids

56.64

Weight (kDa)

8.09

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 117 - 477 1.7e-50 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 201, 1091
AclWI GGATC 2 cut(s) 876, 889
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 140, 621, 1078, 1293
AcuI CTGAAG 1 cut(s) 264
AcyI GRCGYC 1 cut(s) 1121
AfaI GTAC 3 cut(s) 951, 1348, 1519
AfeI AGCGCT 1 cut(s) 701
AfiI CCNNNNNNNGG 3 cut(s) 127, 468, 825
AgsI TTSAA 5 cut(s) 139, 860, 943, 1184, 1461
AjnI CCWGG 3 cut(s) 493, 601, 1417
AluBI AGCT 9 cut(s) 30, 117, 135, 334, 980, 1017, 1069, 1238, 1323
AluI AGCT 9 cut(s) 30, 117, 135, 334, 980, 1017, 1069, 1238, 1323
Alw26I GTCTC 2 cut(s) 1105, 1233
AlwI GGATC 2 cut(s) 876, 889
AlwNI CAGNNNCTG 1 cut(s) 443
Aor51HI AGCGCT 1 cut(s) 701
AoxI GGCC 3 cut(s) 3, 299, 354
ApeKI GCWGC 4 cut(s) 156, 659, 907, 1235
ApoI RAATTY 4 cut(s) 140, 621, 1078, 1293
AspLEI GCGC 3 cut(s) 702, 907, 1414
AspS9I GGNCC 2 cut(s) 214, 1195
AsuC2I CCSGG 1 cut(s) 221
AsuHPI GGTGA 4 cut(s) 76, 394, 944, 1356
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 2 cut(s) 214, 1195
BaeI ACNNNNGTAYC 2 cut(s) 1509, 1542
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 881
BanII GRGCYC 1 cut(s) 198
BauI CACGAG 1 cut(s) 705
BbsI GAAGAC 1 cut(s) 905
BbvCI CCTCAGC 1 cut(s) 88
BbvI GCAGC 4 cut(s) 168, 646, 919, 1247
BccI CCATC 2 cut(s) 1359, 1501
BceAI ACGGC 2 cut(s) 87, 695
BcgI CGANNNNNNTGC 2 cut(s) 1188, 1222
BciT130I CCWGG 3 cut(s) 495, 603, 1419
BcnI CCSGG 1 cut(s) 221
BcoDI GTCTC 2 cut(s) 1105, 1233
BfaI CTAG 4 cut(s) 1037, 1137, 1173, 1265
BfmI CTRYAG 2 cut(s) 567, 1233
BfoI RGCGCY 2 cut(s) 703, 1415
BisI GCNGC 5 cut(s) 157, 660, 908, 1092, 1236
BlpI GCTNAGC 1 cut(s) 113
BlsI GCNGC 5 cut(s) 158, 661, 909, 1093, 1237
Bme1390I CCNGG 4 cut(s) 221, 495, 603, 1419
Bme18I GGWCC 2 cut(s) 214, 1195
BmgT120I GGNCC 2 cut(s) 214, 1195
BmiI GGNNCC 3 cut(s) 197, 768, 883
BmrFI CCNGG 4 cut(s) 221, 495, 603, 1419
BmsI GCATC 2 cut(s) 424, 1154
BpiI GAAGAC 1 cut(s) 905
Bpu10I CCTNAGC 1 cut(s) 88
Bpu1102I GCTNAGC 1 cut(s) 113
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 409, 557
BpuMI CCSGG 1 cut(s) 221
BsaHI GRCGYC 1 cut(s) 1121
BsaI GGTCTC 1 cut(s) 1105
BsaJI CCNNGG 3 cut(s) 305, 494, 953
BsaXI ACNNNNNCTCC 5 cut(s) 30, 38, 68, 630, 660
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 468, 825
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 3 cut(s) 1306, 1447, 1519
Bse3DI GCAATG 1 cut(s) 996
BseBI CCWGG 3 cut(s) 495, 603, 1419
BseDI CCNNGG 3 cut(s) 305, 494, 953
BseGI GGATG 2 cut(s) 952, 1145
BseLI CCNNNNNNNGG 3 cut(s) 127, 468, 825
BseMI GCAATG 1 cut(s) 996
BseMII CTCAG 3 cut(s) 102, 104, 335
BseNI ACTGG 3 cut(s) 1306, 1447, 1519
BseRI GAGGAG 2 cut(s) 759, 1079
BseXI GCAGC 4 cut(s) 168, 646, 919, 1247
BseYI CCCAGC 3 cut(s) 69, 792, 1017
BshFI GGCC 3 cut(s) 5, 301, 356
BsiSI CCGG 2 cut(s) 204, 220
BslI CCNNNNNNNGG 3 cut(s) 127, 468, 825
BsmAI GTCTC 2 cut(s) 1105, 1233
BsnI GGCC 3 cut(s) 5, 301, 356
Bso31I GGTCTC 1 cut(s) 1105
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 881, 1261
Bsp1720I GCTNAGC 1 cut(s) 113
BspACI CCGC 2 cut(s) 201, 1091
BspANI GGCC 3 cut(s) 5, 301, 356
BspCNI CTCAG 3 cut(s) 101, 105, 334
BspLI GGNNCC 3 cut(s) 197, 768, 883
BspMAI CTGCAG 1 cut(s) 1237
BspPI GGATC 2 cut(s) 876, 889
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 125
BspTNI GGTCTC 1 cut(s) 1105
BsrDI GCAATG 1 cut(s) 996
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 3 cut(s) 1306, 1447, 1519
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 3 cut(s) 305, 494, 953
BssMI GATC 2 cut(s) 881, 1261
BssNI GRCGYC 1 cut(s) 1121
BssSI CACGAG 1 cut(s) 705
Bst2BI CACGAG 1 cut(s) 705
Bst2UI CCWGG 3 cut(s) 495, 603, 1419
Bst4CI ACNGT 3 cut(s) 954, 1195, 1405
Bst6I CTCTTC 2 cut(s) 82, 690
BstACI GRCGYC 1 cut(s) 1121
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 5 cut(s) 205, 503, 507, 1378, 1543
BstDEI CTNAG 3 cut(s) 88, 113, 321
BstDSI CCRYGG 2 cut(s) 305, 953
BstF5I GGATG 2 cut(s) 952, 1145
BstH2I RGCGCY 2 cut(s) 703, 1415
BstHHI GCGC 3 cut(s) 702, 907, 1414
BstKTI GATC 2 cut(s) 884, 1264
BstMAI GTCTC 2 cut(s) 1105, 1233
BstMBI GATC 2 cut(s) 881, 1261
BstMWI GCNNNNNNNGC 1 cut(s) 986
BstNI CCWGG 3 cut(s) 495, 603, 1419
BstSCI CCNGG 4 cut(s) 219, 493, 601, 1417
BstSFI CTRYAG 2 cut(s) 567, 1233
BstV1I GCAGC 4 cut(s) 168, 646, 919, 1247
BstV2I GAAGAC 1 cut(s) 905
BstX2I RGATCY 1 cut(s) 881
BstXI CCANNNNNNTGG 1 cut(s) 788
BstYI RGATCY 1 cut(s) 881
BsuRI GGCC 3 cut(s) 5, 301, 356
BtgI CCRYGG 2 cut(s) 305, 953
BtsCI GGATG 2 cut(s) 952, 1145
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 4 cut(s) 285, 444, 1299, 1440
Cac8I GCNNGC 5 cut(s) 205, 503, 507, 1378, 1543
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 3 cut(s) 702, 907, 1414
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 214, 1195
CpoI CGGWCCG 1 cut(s) 1195
CseI GACGC 2 cut(s) 166, 1110
Csp6I GTAC 3 cut(s) 950, 1347, 1518
CspI CGGWCCG 1 cut(s) 1195
CviAII CATG 6 cut(s) 373, 409, 873, 895, 1041, 1470
CviQI GTAC 3 cut(s) 950, 1347, 1518
DdeI CTNAG 3 cut(s) 88, 113, 321
DpnI GATC 2 cut(s) 883, 1263
DpnII GATC 2 cut(s) 881, 1261
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 82, 690
EarI CTCTTC 2 cut(s) 82, 690
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 1105
Eco47I GGWCC 2 cut(s) 214, 1195
Eco47III AGCGCT 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 1293
EcoRII CCWGG 3 cut(s) 493, 601, 1417
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 6 cut(s) 376, 412, 876, 898, 1044, 1473
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 371, 403
FatI CATG 6 cut(s) 372, 408, 872, 894, 1040, 1469
FauI CCCGC 1 cut(s) 208
Fnu4HI GCNGC 5 cut(s) 157, 660, 908, 1092, 1236
FokI GGATG 2 cut(s) 959, 1132
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 5 cut(s) 157, 660, 908, 1092, 1236
FspBI CTAG 4 cut(s) 1037, 1137, 1173, 1265
GlaI GCGC 3 cut(s) 701, 906, 1413
GluI GCNGC 5 cut(s) 157, 660, 908, 1092, 1236
GsaI CCCAGC 3 cut(s) 73, 796, 1021
HaeII RGCGCY 2 cut(s) 703, 1415
HaeIII GGCC 3 cut(s) 5, 301, 356
HapII CCGG 2 cut(s) 204, 220
HgaI GACGC 2 cut(s) 166, 1110
HhaI GCGC 3 cut(s) 702, 907, 1414
Hin1I GRCGYC 1 cut(s) 1121
Hin1II CATG 6 cut(s) 376, 412, 876, 898, 1044, 1473
Hin6I GCGC 3 cut(s) 700, 905, 1412
HinP1I GCGC 3 cut(s) 700, 905, 1412
HinfI GANTC 9 cut(s) 147, 186, 239, 251, 484, 797, 935, 1246, 1457
HpaII CCGG 2 cut(s) 204, 220
HphI GGTGA 4 cut(s) 76, 394, 944, 1356
Hpy166II GTNNAC 2 cut(s) 217, 385
Hpy188I TCNGA 7 cut(s) 20, 146, 238, 244, 324, 892, 1199
Hpy188III TCNNGA 9 cut(s) 181, 260, 536, 618, 705, 857, 1259, 1335, 1355
Hpy8I GTNNAC 2 cut(s) 217, 385
Hpy99I CGWCG 1 cut(s) 108
HpyCH4III ACNGT 3 cut(s) 954, 1195, 1405
HpyCH4V TGCA 7 cut(s) 156, 662, 752, 1145, 1235, 1328, 1376
HpyF10VI GCNNNNNNNGC 1 cut(s) 986
HpyF3I CTNAG 3 cut(s) 88, 113, 321
Hsp92I GRCGYC 1 cut(s) 1121
Hsp92II CATG 6 cut(s) 376, 412, 876, 898, 1044, 1473
HspAI GCGC 3 cut(s) 700, 905, 1412
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 881, 1261
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 4 cut(s) 35, 201, 772, 1066
Lsp1109I GCAGC 4 cut(s) 168, 646, 919, 1247
LweI GCATC 2 cut(s) 424, 1154
MaeI CTAG 4 cut(s) 1037, 1137, 1173, 1265
MaeIII GTNAC 3 cut(s) 368, 932, 1132
MalI GATC 2 cut(s) 883, 1263
MboI GATC 2 cut(s) 881, 1261
MboII GAAGA 6 cut(s) 69, 322, 707, 752, 910, 1245
MfeI CAATTG 3 cut(s) 488, 1215, 1521
MflI RGATCY 1 cut(s) 881
MhlI GDGCHC 1 cut(s) 198
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 6 cut(s) 156, 195, 260, 493, 929, 1240
MmeI TCCRAC 2 cut(s) 407, 859
Mox20I TGGCCA 1 cut(s) 5
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 162, 551
MslI CAYNNNNRTG 1 cut(s) 1008
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 204, 220
MspR9I CCNGG 4 cut(s) 221, 495, 603, 1419
MunI CAATTG 3 cut(s) 488, 1215, 1521
MvaI CCWGG 3 cut(s) 495, 603, 1419
MwoI GCNNNNNNNGC 1 cut(s) 986
NaeI GCCGGC 1 cut(s) 205
NciI CCSGG 1 cut(s) 221
NdeII GATC 2 cut(s) 881, 1261
NgoMIV GCCGGC 1 cut(s) 203
NlaIII CATG 6 cut(s) 376, 412, 876, 898, 1044, 1473
NlaIV GGNNCC 3 cut(s) 197, 768, 883
NmuCI GTSAC 2 cut(s) 932, 1132
NspV TTCGAA 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 690
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 3 cut(s) 239, 797, 1457
PkrI GCNGC 5 cut(s) 158, 661, 909, 1093, 1237
PleI GAGTC 6 cut(s) 155, 194, 259, 492, 929, 1240
PpsI GAGTC 6 cut(s) 155, 194, 259, 492, 929, 1240
Psp6I CCWGG 3 cut(s) 493, 601, 1417
PspFI CCCAGC 3 cut(s) 69, 792, 1017
PspGI CCWGG 3 cut(s) 493, 601, 1417
PspN4I GGNNCC 3 cut(s) 197, 768, 883
PspPI GGNCC 2 cut(s) 214, 1195
PstI CTGCAG 1 cut(s) 1237
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 881
RsaI GTAC 3 cut(s) 951, 1348, 1519
RsaNI GTAC 3 cut(s) 950, 1347, 1518
RseI CAYNNNNRTG 1 cut(s) 1008
Rsr2I CGGWCCG 1 cut(s) 1195
RsrII CGGWCCG 1 cut(s) 1195
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 162, 551
SatI GCNGC 5 cut(s) 157, 660, 908, 1092, 1236
Sau3AI GATC 2 cut(s) 881, 1261
Sau96I GGNCC 2 cut(s) 214, 1195
SchI GAGTC 6 cut(s) 156, 195, 260, 493, 929, 1240
ScrFI CCNGG 4 cut(s) 221, 495, 603, 1419
SduI GDGCHC 1 cut(s) 198
SfaNI GCATC 2 cut(s) 424, 1154
SfcI CTRYAG 2 cut(s) 567, 1233
SfuI TTCGAA 1 cut(s) 125
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 2 cut(s) 214, 1195
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 2 cut(s) 388, 536
SmoI CTYRAG 2 cut(s) 388, 536
SsiI CCGC 2 cut(s) 201, 1091
SspI AATATT 2 cut(s) 1128, 1500
SspMI CTAG 4 cut(s) 1037, 1137, 1173, 1265
StyD4I CCNGG 4 cut(s) 219, 493, 601, 1417
TaaI ACNGT 3 cut(s) 954, 1195, 1405
TaqI TCGA 2 cut(s) 125, 1319
TaqII GACCGA 1 cut(s) 1100
TauI GCSGC 1 cut(s) 1094
TfiI GAWTC 3 cut(s) 239, 797, 1457
Tru1I TTAA 2 cut(s) 162, 551
Tru9I TTAA 2 cut(s) 162, 551
TscAI CASTG 4 cut(s) 285, 444, 1306, 1447
TseFI GTSAC 2 cut(s) 932, 1132
TseI GCWGC 4 cut(s) 156, 659, 907, 1235
Tsp45I GTSAC 2 cut(s) 932, 1132
TspDTI ATGAA 4 cut(s) 339, 911, 1458, 1477
TspGWI ACGGA 2 cut(s) 294, 1104
TspRI CASTG 4 cut(s) 285, 444, 1306, 1447
VpaK11BI GGWCC 2 cut(s) 214, 1195
XapI RAATTY 4 cut(s) 140, 621, 1078, 1293
XspI CTAG 4 cut(s) 1037, 1137, 1173, 1265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.