Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

5089273 .. 5089638

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016250

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCTAGTTTATCCAGAAACATATTTGTATCAGAGGCATACGCAATCGATTTGTGCTTTGATTTGGACGACGCGCTGACGCTGCCGGAGAATACAGCCGGTTACCAGACTAGTTCAAGAACGTCGTCGGAGAGTTATACTACTAGTGATGCTTTGGTAGCAAACCTGCAGACGGTTGCTACAGTTGAAGGTGCCATTTGCTCTGTCTGTGTGGAAGGTTTTCGCGCAGAAGAAGGAGCTATAGGTGGTAGAGGTAAGCAGGTTCCTTGTGGCCATGTCTATCACGAAACTTGCATAGCAAAGTGGCTTTCACACTCCAACTCTTGCCCTCTCTGCCGCTCCACCATCTTCGATCCTCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

122

Amino Acids

13.0

Weight (kDa)

4.83

Isoelectric Point (pI)

46.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	67 - 113	3.8e-14	Ring finger domain
zf-C3HC4	PF00097	67 - 112	2.8e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	67 - 110	3e-07	RING-type zinc-finger
zf-rbx1	PF12678	88 - 113	8.6e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	88 - 112	5.4e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	174, 250
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	339
AccII	CGCG	2 cut(s)	74, 225
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	117, 188
AhlI	ACTAGT	2 cut(s)	110, 143
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	76, 227
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	353
BcuI	ACTAGT	2 cut(s)	110, 143
BfaI	CTAG	3 cut(s)	6, 111, 144
BfmI	CTRYAG	3 cut(s)	167, 180, 240
BfuAI	ACCTGC	2 cut(s)	174, 250
BisI	GCNGC	2 cut(s)	83, 337
BlsI	GCNGC	2 cut(s)	84, 338
BmiI	GGNNCC	2 cut(s)	193, 264
BmsI	GCATC	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	2 cut(s)	74, 225
BshFI	GGCC	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	86, 99
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	1 cut(s)	273
Bsp143I	GATC	1 cut(s)	352
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	273
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	2 cut(s)	74, 225
BspLI	GGNNCC	2 cut(s)	193, 264
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	2 cut(s)	174, 250
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	339
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	1 cut(s)	352
Bst4CI	ACNGT	2 cut(s)	175, 184
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	2 cut(s)	74, 225
BstHHI	GCGC	2 cut(s)	76, 227
BstKTI	GATC	1 cut(s)	355
BstMBI	GATC	1 cut(s)	352
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 158, 333
BstPI	GGTNACC	1 cut(s)	101
BstSFI	CTRYAG	3 cut(s)	167, 180, 240
BstUI	CGCG	2 cut(s)	74, 225
BstV1I	GCAGC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	2 cut(s)	174, 250
CfoI	GCGC	2 cut(s)	76, 227
Cfr10I	RCCGGY	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	2 cut(s)	80, 88
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	5 cut(s)	5, 98, 239, 273, 307
CviKI_1	RGCY	5 cut(s)	5, 98, 239, 273, 307
DpnI	GATC	1 cut(s)	354
DpnII	GATC	1 cut(s)	352
EaeI	YGGCCR	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	1 cut(s)	278
FaiI	YATR	6 cut(s)	23, 40, 138, 242, 276, 296
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	83, 337
Fsp4HI	GCNGC	2 cut(s)	83, 337
FspBI	CTAG	3 cut(s)	6, 111, 144
GlaI	GCGC	2 cut(s)	75, 226
GluI	GCNGC	2 cut(s)	83, 337
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	2 cut(s)	86, 99
HgaI	GACGC	2 cut(s)	80, 88
HhaI	GCGC	2 cut(s)	76, 227
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	2 cut(s)	74, 225
HinP1I	GCGC	2 cut(s)	74, 225
HpaII	CCGG	2 cut(s)	86, 99
Hpy188I	TCNGA	2 cut(s)	34, 130
Hpy188III	TCNNGA	3 cut(s)	15, 117, 284
Hpy99I	CGWCG	3 cut(s)	74, 127, 130
HpyAV	CCTTC	3 cut(s)	182, 209, 227
HpyCH4III	ACNGT	2 cut(s)	175, 184
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	169, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 158, 333
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	2 cut(s)	74, 225
Kzo9I	GATC	1 cut(s)	352
LmnI	GCTCC	2 cut(s)	236, 344
LpnPI	CCDG	6 cut(s)	28, 99, 112, 119, 179, 245
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	6, 111, 144
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	354
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	1 cut(s)	352
MboII	GAAGA	2 cut(s)	242, 340
MlsI	TGGCCA	1 cut(s)	273
MluNI	TGGCCA	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	108, 342
MnlI	CCTC	4 cut(s)	28, 245, 339, 366
Mox20I	TGGCCA	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	2 cut(s)	86, 99
MvnI	CGCG	2 cut(s)	74, 225
MwoI	GCNNNNNNNGC	3 cut(s)	82, 158, 333
NdeII	GATC	1 cut(s)	352
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	193, 264
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	84, 338
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	193, 264
PstI	CTGCAG	1 cut(s)	171
SatI	GCNGC	2 cut(s)	83, 337
Sau3AI	GATC	1 cut(s)	352
SetI	ASST	8 cut(s)	125, 168, 193, 220, 241, 247, 256, 264
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	3 cut(s)	167, 180, 240
SpeI	ACTAGT	2 cut(s)	110, 143
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	3 cut(s)	6, 111, 144
TaaI	ACNGT	2 cut(s)	175, 184
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	48, 351
TauI	GCSGC	1 cut(s)	339
TseI	GCWGC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	6, 111, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.