Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Forward (+)

19761567 .. 19762407

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCGCTGAACCTAAGACCGTATCATCAAATTATCCCATGAGCCTACAGTTTGACCTGGATGAAGCTTTAACTTGGGAAGACAATTCCAATTCCACCCTCTTGAATAGTAATATCAACATACCAAATCCAAACTCAAACTCGTTCATGATCCTACAAAATATGCCAACTCCTCCTCCTGCTGCTGCTGCAGTTGATGATGTTTGTGCGGTTTGCATGGAAGGCTTGCAATCAGGTTCTGATGATGATGAGGAGGATGATCAGAATCAGAATCACAAGGGTAAACTAGTGCCATGTGGCCATGTATACCATGCCACGTGTCTTGCCTCCTGGCTCTTCGTCTGCAACTCTTGCCCTCTCTGCCGCTCCACCATCCACCTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

129

Amino Acids

13.96

Weight (kDa)

4.32

Isoelectric Point (pI)

61.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	306
AciI	CCGC	3 cut(s)	6, 209, 364
AclWI	GGATC	1 cut(s)	145
AcoI	YGGCCR	2 cut(s)	3, 298
AcvI	CACGTG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	106
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	57, 329
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
AlwI	GGATC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	2 cut(s)	3, 298
ApeKI	GCWGC	3 cut(s)	182, 185, 188
BalI	TGGCCA	1 cut(s)	300
BbrPI	CACGTG	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	3 cut(s)	169, 172, 175
BccI	CCATC	1 cut(s)	380
BciT130I	CCWGG	2 cut(s)	59, 331
BclI	TGATCA	1 cut(s)	259
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	1 cut(s)	287
BfmI	CTRYAG	2 cut(s)	47, 189
BisI	GCNGC	5 cut(s)	6, 183, 186, 189, 364
BlsI	GCNGC	5 cut(s)	7, 184, 187, 190, 365
Bme1390I	CCNGG	2 cut(s)	59, 331
BmrFI	CCNGG	2 cut(s)	59, 331
BpiI	GAAGAC	1 cut(s)	87
BsaAI	YACGTR	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	264
BsaXI	ACNNNNNCTCC	2 cut(s)	160, 190
Bse8I	GATNNNNATC	1 cut(s)	264
BseBI	CCWGG	2 cut(s)	59, 331
BseGI	GGATG	3 cut(s)	67, 262, 372
BseJI	GATNNNNATC	1 cut(s)	264
BseRI	GAGGAG	3 cut(s)	162, 165, 266
BseXI	GCAGC	3 cut(s)	169, 172, 175
BshFI	GGCC	2 cut(s)	5, 300
BsnI	GGCC	2 cut(s)	5, 300
Bsp143I	GATC	2 cut(s)	150, 259
BspACI	CCGC	3 cut(s)	6, 209, 364
BspANI	GGCC	2 cut(s)	5, 300
BspHI	TCATGA	1 cut(s)	147
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	1 cut(s)	145
BspQI	GCTCTTC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	366
BssMI	GATC	2 cut(s)	150, 259
BssNAI	GTATAC	1 cut(s)	307
Bst1107I	GTATAC	1 cut(s)	307
Bst2UI	CCWGG	2 cut(s)	59, 331
Bst4CI	ACNGT	2 cut(s)	22, 51
Bst6I	CTCTTC	1 cut(s)	341
BstAPI	GCANNNNNTGC	1 cut(s)	351
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	15
BstF5I	GGATG	3 cut(s)	67, 262, 372
BstKTI	GATC	2 cut(s)	153, 262
BstMBI	GATC	2 cut(s)	150, 259
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 222, 351, 360
BstNI	CCWGG	2 cut(s)	59, 331
BstSCI	CCNGG	2 cut(s)	57, 329
BstSFI	CTRYAG	2 cut(s)	47, 189
BstV1I	GCAGC	3 cut(s)	169, 172, 175
BstV2I	GAAGAC	1 cut(s)	87
BstZ17I	GTATAC	1 cut(s)	307
BsuRI	GGCC	2 cut(s)	5, 300
BtsCI	GGATG	3 cut(s)	67, 262, 372
Cac8I	GCNNGC	1 cut(s)	227
CaiI	CAGNNNCTG	1 cut(s)	239
CciI	TCATGA	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	6 cut(s)	40, 148, 217, 294, 302, 311
CviJI	RGCY	6 cut(s)	5, 45, 68, 225, 300, 334
CviKI_1	RGCY	6 cut(s)	5, 45, 68, 225, 300, 334
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	152, 261
DpnII	GATC	2 cut(s)	150, 259
EaeI	YGGCCR	2 cut(s)	3, 298
Eam1104I	CTCTTC	1 cut(s)	341
EarI	CTCTTC	1 cut(s)	341
Eco72I	CACGTG	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	57, 329
FaeI	CATG	6 cut(s)	43, 151, 220, 297, 305, 314
FaiI	YATR	9 cut(s)	41, 122, 149, 164, 218, 295, 303, 307, 312
FatI	CATG	6 cut(s)	39, 147, 216, 293, 301, 310
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	5 cut(s)	6, 183, 186, 189, 364
FokI	GGATG	3 cut(s)	74, 269, 359
Fsp4HI	GCNGC	5 cut(s)	6, 183, 186, 189, 364
FspBI	CTAG	1 cut(s)	287
GluI	GCNGC	5 cut(s)	6, 183, 186, 189, 364
HaeIII	GGCC	2 cut(s)	5, 300
Hin1II	CATG	6 cut(s)	43, 151, 220, 297, 305, 314
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	2 cut(s)	265, 271
Hpy166II	GTNNAC	2 cut(s)	284, 307
Hpy188I	TCNGA	3 cut(s)	241, 264, 270
Hpy188III	TCNNGA	2 cut(s)	103, 148
Hpy8I	GTNNAC	2 cut(s)	284, 307
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	2 cut(s)	22, 51
HpyCH4IV	ACGT	1 cut(s)	317
HpyCH4V	TGCA	4 cut(s)	191, 216, 229, 345
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 222, 351, 360
HpyF3I	CTNAG	1 cut(s)	15
HpySE526I	ACGT	1 cut(s)	317
Hsp92II	CATG	6 cut(s)	43, 151, 220, 297, 305, 314
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	150, 259
LguI	GCTCTTC	1 cut(s)	341
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	6 cut(s)	44, 71, 192, 219, 316, 343
Lsp1109I	GCAGC	3 cut(s)	169, 172, 175
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	317
MalI	GATC	2 cut(s)	152, 261
MbiI	CCGCTC	1 cut(s)	366
MboI	GATC	2 cut(s)	150, 259
MboII	GAAGA	2 cut(s)	92, 328
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	3 cut(s)	31, 85, 91
MluNI	TGGCCA	1 cut(s)	300
MnlI	CCTC	7 cut(s)	110, 183, 186, 244, 247, 337, 366
Mox20I	TGGCCA	1 cut(s)	300
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	1 cut(s)	71
Msp20I	TGGCCA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	59, 331
MvaI	CCWGG	2 cut(s)	59, 331
MwoI	GCNNNNNNNGC	4 cut(s)	188, 222, 351, 360
NdeII	GATC	2 cut(s)	150, 259
NlaIII	CATG	6 cut(s)	43, 151, 220, 297, 305, 314
PagI	TCATGA	1 cut(s)	147
PciSI	GCTCTTC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	265, 271
PkrI	GCNGC	5 cut(s)	7, 184, 187, 190, 365
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	57, 329
PspCI	CACGTG	1 cut(s)	318
PspGI	CCWGG	2 cut(s)	57, 329
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	341
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	5 cut(s)	6, 183, 186, 189, 364
Sau3AI	GATC	2 cut(s)	150, 259
ScrFI	CCNGG	2 cut(s)	59, 331
SetI	ASST	6 cut(s)	16, 60, 70, 238, 320, 381
SfcI	CTRYAG	2 cut(s)	47, 189
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	3 cut(s)	31, 85, 91
SsiI	CCGC	3 cut(s)	6, 209, 364
SspMI	CTAG	1 cut(s)	287
StyD4I	CCNGG	2 cut(s)	57, 329
TaaI	ACNGT	2 cut(s)	22, 51
TaiI	ACGT	1 cut(s)	320
TasI	AATT	3 cut(s)	31, 85, 91
TauI	GCSGC	2 cut(s)	8, 366
TfiI	GAWTC	2 cut(s)	265, 271
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseI	GCWGC	3 cut(s)	182, 185, 188
TspDTI	ATGAA	2 cut(s)	78, 136
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.