Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

5494492 .. 5495141

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46696

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTAGTTTATCCAGAAACACATTTGTATCAGAGGCATACGCAATCGATCTGTGCTTTGATTTGGACGACGCGCTGACGCTGCCGGGGAATACAACCGGTTACCTGACTAATTCAAGAACGTCATTGGAGAGTGATAGTACTAGTGATGGTTTGGTAGCCAACCTGCCGACGGTTGTCGCAGTTGAAGGTGTCATTTGCTCGGTTTTGTCGAAGGTTTTCGAGCAGAAGAAGAAGGAGGTGGTAGAGGTAAGCAAGTCCCTTGTGGCCATGTGTATCACGAAACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

97

Amino Acids

10.32

Weight (kDa)

4.58

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccII	CGCG	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	267
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	117, 188
AhlI	ACTAGT	1 cut(s)	143
AoxI	GGCC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	87
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	87
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	2 cut(s)	6, 144
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BoxI	GACNNNNGTC	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	98
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	86, 99
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	244
BsnI	GGCC	1 cut(s)	269
Bsp143I	GATC	1 cut(s)	49
BspANI	GGCC	1 cut(s)	269
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	1 cut(s)	49
Bst4CI	ACNGT	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	1 cut(s)	82
BstPAI	GACNNNNGTC	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	2 cut(s)	80, 88
Csp6I	GTAC	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	3 cut(s)	5, 161, 269
CviKI_1	RGCY	3 cut(s)	5, 161, 269
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	267
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	40, 272, 292
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	83
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	6, 144
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	86, 99
HgaI	GACGC	2 cut(s)	80, 88
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	86, 99
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	15, 117, 280
Hpy99I	CGWCG	2 cut(s)	74, 175
HpyAV	CCTTC	3 cut(s)	182, 208, 229
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	82
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	28, 99, 112, 119, 179
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	6, 144
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	241, 244
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	1 cut(s)	112
MluNI	TGGCCA	1 cut(s)	269
MnlI	CCTC	3 cut(s)	28, 232, 241
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	218
MscI	TGGCCA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	269
MspI	CCGG	2 cut(s)	86, 99
MspR9I	CCNGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PdmI	GAANNNNTTC	1 cut(s)	218
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	176
PspEI	GGTNACC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	87
SetI	ASST	7 cut(s)	108, 125, 168, 193, 219, 243, 252
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	6, 144
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	3 cut(s)	48, 212, 222
TasI	AATT	1 cut(s)	112
TatI	WGTACW	1 cut(s)	140
TseI	GCWGC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	218
XspI	CTAG	2 cut(s)	6, 144
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.