Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

3362466 .. 3362858

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAACTGTATTTTCAGATCAACTGGTCAACACCATATCAACTTACCATATCGACCTTGATGAATTTGATCTGGATGAAGCTTTAACTTTGTCTTTTGCAGAGAATTCCAATTCTGCCCACTGCAATAATAACAGTATCATTGCAGCATCGAATTCAACCTGCAGCTCCTTGATAGTTGAATGCATGCCAAGTCCTGTTACTGCAGTCGATGATGTTTGTGCGGTTTGCATGGAAGGACTGCAATCAGGTGGTGAGGAGGATCCCAATATTATTGGTAAACAAGTCCCATGTGGCCATGTATTTCATGCCACGTGTATCTCCTCCTGGCTTGTCGCCTGCAACTCTTGCCCTCTCTGCCGCTCCCCCATGATCCCCGCCGTCGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

131

Amino Acids

13.81

Weight (kDa)

4.05

Isoelectric Point (pI)

65.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	73 - 121	7.2e-12	Ring finger domain
zf-C3HC4_2	PF13923	74 - 120	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	74 - 118	9e-07	RING-type zinc-finger
zf-C3HC4	PF00097	74 - 120	5.2e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	84 - 121	1.2e-08	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	170
AccBSI	CCGCTC	1 cut(s)	363
AciI	CCGC	3 cut(s)	224, 361, 378
AclWI	GGATC	3 cut(s)	257, 270, 367
AcoI	YGGCCR	1 cut(s)	295
AcsI	RAATTY	3 cut(s)	65, 106, 154
AcvI	CACGTG	1 cut(s)	315
AflIII	ACRYGT	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	159, 182
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	2 cut(s)	83, 168
AluI	AGCT	2 cut(s)	83, 168
AlwI	GGATC	3 cut(s)	257, 270, 367
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	146, 165
ApoI	RAATTY	3 cut(s)	65, 106, 154
AsuHPI	GGTGA	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	297
BamHI	GGATCC	1 cut(s)	262
BbrPI	CACGTG	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	158, 177
BceAI	ACGGC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	328
BfmI	CTRYAG	2 cut(s)	163, 204
BfuAI	ACCTGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	147, 166, 361
BlsI	GCNGC	3 cut(s)	148, 167, 362
Bme1390I	CCNGG	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	315
Bse1I	ACTGG	1 cut(s)	30
Bse3DI	GCAATG	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	30
BseRI	GAGGAG	2 cut(s)	272, 313
BseXI	GCAGC	2 cut(s)	158, 177
BshFI	GGCC	1 cut(s)	297
BslFI	GGGAC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	297
Bsp143I	GATC	4 cut(s)	19, 70, 262, 372
BspACI	CCGC	3 cut(s)	224, 361, 378
BspANI	GGCC	1 cut(s)	297
BspLI	GGNNCC	1 cut(s)	264
BspMAI	CTGCAG	2 cut(s)	167, 208
BspMI	ACCTGC	1 cut(s)	170
BspPI	GGATC	3 cut(s)	257, 270, 367
BsrBI	CCGCTC	1 cut(s)	363
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	4 cut(s)	19, 70, 262, 372
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	3 cut(s)	10, 137, 390
BstAPI	GCANNNNNTGC	1 cut(s)	348
BstBAI	YACGTR	1 cut(s)	315
BstC8I	GCNNGC	2 cut(s)	188, 340
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	4 cut(s)	22, 73, 265, 375
BstMBI	GATC	4 cut(s)	19, 70, 262, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	348, 357
BstNI	CCWGG	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	190
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	2 cut(s)	163, 204
BstV1I	GCAGC	2 cut(s)	158, 177
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	1 cut(s)	170
Cac8I	GCNNGC	2 cut(s)	188, 340
CviAII	CATG	6 cut(s)	187, 232, 291, 299, 308, 370
CviJI	RGCY	4 cut(s)	83, 168, 297, 331
CviKI_1	RGCY	4 cut(s)	83, 168, 297, 331
DpnI	GATC	4 cut(s)	21, 72, 264, 374
DpnII	GATC	4 cut(s)	19, 70, 262, 372
EaeI	YGGCCR	1 cut(s)	295
Eco72I	CACGTG	1 cut(s)	315
EcoRI	GAATTC	2 cut(s)	106, 154
EcoRII	CCWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	188
FaeI	CATG	6 cut(s)	190, 235, 294, 302, 311, 373
FaiI	YATR	8 cut(s)	38, 51, 188, 233, 292, 300, 309, 371
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	6 cut(s)	186, 231, 290, 298, 307, 369
FauI	CCCGC	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	147, 166, 361
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	3 cut(s)	147, 166, 361
GluI	GCNGC	3 cut(s)	147, 166, 361
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	6 cut(s)	190, 235, 294, 302, 311, 373
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HindIII	AAGCTT	1 cut(s)	81
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	2 cut(s)	31, 281
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	2 cut(s)	31, 281
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	3 cut(s)	10, 137, 390
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	9 cut(s)	101, 126, 146, 165, 186, 206, 231, 244, 342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	348, 357
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	6 cut(s)	190, 235, 294, 302, 311, 373
Kzo9I	GATC	4 cut(s)	19, 70, 262, 372
LmnI	GCTCC	2 cut(s)	173, 368
LpnPI	CCDG	8 cut(s)	11, 59, 175, 210, 234, 313, 340, 352
Lsp1109I	GCAGC	2 cut(s)	158, 177
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	4 cut(s)	21, 72, 264, 374
MbiI	CCGCTC	1 cut(s)	363
MboI	GATC	4 cut(s)	19, 70, 262, 372
MflI	RGATCY	1 cut(s)	262
MlsI	TGGCCA	1 cut(s)	297
MluCI	AATT	4 cut(s)	65, 106, 112, 154
MluNI	TGGCCA	1 cut(s)	297
MnlI	CCTC	4 cut(s)	250, 253, 334, 363
Mox20I	TGGCCA	1 cut(s)	297
Mph1103I	ATGCAT	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	297
MseI	TTAA	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	348, 357
NdeII	GATC	4 cut(s)	19, 70, 262, 372
NlaIII	CATG	6 cut(s)	190, 235, 294, 302, 311, 373
NlaIV	GGNNCC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	188
NspI	RCATGY	1 cut(s)	190
PaeI	GCATGC	1 cut(s)	190
PctI	GAATGC	1 cut(s)	188
PkrI	GCNGC	3 cut(s)	148, 167, 362
PmaCI	CACGTG	1 cut(s)	315
PmlI	CACGTG	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	326
PspCI	CACGTG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	326
PspN4I	GGNNCC	1 cut(s)	264
PstI	CTGCAG	2 cut(s)	167, 208
PsuI	RGATCY	1 cut(s)	262
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	3 cut(s)	147, 166, 361
Sau3AI	GATC	4 cut(s)	19, 70, 262, 372
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	6 cut(s)	60, 85, 164, 170, 253, 317
SfaNI	GCATC	1 cut(s)	158
SfcI	CTRYAG	2 cut(s)	163, 204
SphI	GCATGC	1 cut(s)	190
Sse9I	AATT	4 cut(s)	65, 106, 112, 154
SsiI	CCGC	3 cut(s)	224, 361, 378
SspI	AATATT	1 cut(s)	271
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	3 cut(s)	10, 137, 390
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	4 cut(s)	54, 152, 210, 384
TasI	AATT	4 cut(s)	65, 106, 112, 154
TauI	GCSGC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	2 cut(s)	146, 165
TspDTI	ATGAA	3 cut(s)	78, 93, 296
TspRI	CASTG	1 cut(s)	128
XapI	RAATTY	3 cut(s)	65, 106, 154
XceI	RCATGY	1 cut(s)	190
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.