Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Forward (+)

1686510 .. 1716249

Gene Structure 29740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0020900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCTCTCCTTCATGCTGATAGTGACTCTGTGAAGTTGTCCATGAGTGTCCAAGAGATGAGCATCAAAGGTGAGGAACCTCCCCCTCAGTATATTGTTAAAGAAAGCAAGTTCGGAGCTATAGAGTCTTCCCCAGAATTGGGTCAAATCCCCACCATCGATGTCAGTCTCTTCTCCCCATCATCAATTCATACCAAGGAAGCAGAGATCGAACTGAACAAACTCAAAATAGCTCTCAGCTCATCAGGCTGCATCCAGGCGGTTGGTCATGGGATATCAAGTTCCTTTCTGGACAAGGTACGCGAAGCTGCGACGCAATTCTTTGAACTCCCAGTGGAAGAGAAGGAAAAGTACTCCAGAGCTGTTCATGGTGGCTCTGAAGGGTATGGGAATGATGTCATTGTTTCAGAGAAGCAAGTTCTTGATTGGTCCTATCGCCTAACACTTCGAGTATTTCCTGAAGATCATAGAAGGCTTAACCTTTGGCCAGAAAATCCAAATGATTTTGGAGAGGTTGTACATGAATATGCAACAAAGGTAAAGTTCATGATGGGGGTTCTGTTTAAGGCCATGGCAAAATCGTTGAAATTGGAAGAGAACAGCTTTTCAGATAAGCTGCTTGGAGAGAGAGCTCTGATGCAAGCAAGATTCAACTTCTATCCACTGTGTTCAAGATCCGATAAAGTTCTTGGTGTGAAGCCACATACAGATAGGTCAGGAGTGACAGTTTTGTTGCAAGACAAAGAAGTTGAAGGTCTTCAAGTTTTGGTAGATGACAAATGGGCTAGAGTCCCCATCGTGCCTCATGCTATAGTTGTTAATCTTGGTGATCAAATGCAGATTATGAGTAATGGTGTATTCAAGAGCCCAATGCACAGGGTGGTGACAAATCCAGAAAGGATGAGGCTATCTGTGGCCTTGTTTAATGAACCAGATCCTGAAACTGAGATTAGTCCAGTGGAGAAACTGATAGATGAGACAAGGCCAAGAGTATACAAAAATGTCAAGAAACAAGAAATATGGTCACATCAACTACGAATGCTCTCAGAGAGGAGAAATAGCACCCGAAACAGTGAAGATCTAAATTTCACTTCTCTGTACCTTTATCATGTAGAAATAAATTGTGTAAACACCATGGAACTTTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

383

Amino Acids

43.53

Weight (kDa)

5.94

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	50 - 165	2.3e-22	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	216 - 311	3.4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	993
AccII	CGCG	1 cut(s)	303
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	669, 929
AcoI	YGGCCR	1 cut(s)	485
AcsI	RAATTY	1 cut(s)	1084
AcuI	CTGAAG	2 cut(s)	399, 480
AdeI	CACNNNGTG	1 cut(s)	880
AfaI	GTAC	4 cut(s)	300, 353, 519, 1100
AfiI	CCNNNNNNNGG	2 cut(s)	139, 140
AgsI	TTSAA	8 cut(s)	326, 586, 652, 672, 752, 761, 862, 1147
AjnI	CCWGG	1 cut(s)	255
AloI	GAACNNNNNNTCC	2 cut(s)	265, 297
AluBI	AGCT	8 cut(s)	119, 233, 240, 308, 362, 603, 616, 632
AluI	AGCT	8 cut(s)	119, 233, 240, 308, 362, 603, 616, 632
Alw21I	GWGCWC	1 cut(s)	634
Alw26I	GTCTC	2 cut(s)	173, 971
AlwI	GGATC	2 cut(s)	669, 929
AlwNI	CAGNNNCTG	1 cut(s)	938
AoxI	GGCC	4 cut(s)	485, 567, 915, 983
ApeKI	GCWGC	3 cut(s)	249, 308, 616
ApoI	RAATTY	1 cut(s)	1084
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	429
AsuHPI	GGTGA	3 cut(s)	83, 839, 895
AvaII	GGWCC	1 cut(s)	429
BalI	TGGCCA	1 cut(s)	487
BanII	GRGCYC	2 cut(s)	634, 869
BarI	GAAGNNNNNNTAC	2 cut(s)	335, 367
BbsI	GAAGAC	2 cut(s)	120, 749
Bbv12I	GWGCWC	1 cut(s)	634
BbvI	GCAGC	3 cut(s)	236, 295, 603
BccI	CCATC	4 cut(s)	164, 187, 544, 803
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	173, 971
BfaI	CTAG	1 cut(s)	786
BfmI	CTRYAG	2 cut(s)	120, 810
BglII	AGATCT	1 cut(s)	1078
BisI	GCNGC	3 cut(s)	250, 309, 617
BlsI	GCNGC	3 cut(s)	251, 310, 618
BmcAI	AGTACT	1 cut(s)	353
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	429
BmgT120I	GGNCC	1 cut(s)	429
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	1 cut(s)	326
BmsI	GCATC	3 cut(s)	72, 261, 627
BmuI	ACTGGG	1 cut(s)	326
BpiI	GAAGAC	2 cut(s)	120, 749
BpmI	CTGGAG	1 cut(s)	340
Bsa29I	ATCGAT	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	62
BsaJI	CCNNGG	3 cut(s)	195, 570, 1134
BsaXI	ACNNNNNCTCC	4 cut(s)	501, 531, 711, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 140
Bse1I	ACTGG	2 cut(s)	332, 956
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	3 cut(s)	195, 570, 1134
BseGI	GGATG	2 cut(s)	252, 906
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	2 cut(s)	139, 140
BseMII	CTCAG	4 cut(s)	101, 250, 936, 1059
BseNI	ACTGG	2 cut(s)	332, 956
BseRI	GAGGAG	1 cut(s)	1066
BseXI	GCAGC	3 cut(s)	236, 295, 603
Bsh1236I	CGCG	1 cut(s)	303
BshFI	GGCC	4 cut(s)	487, 569, 917, 985
BshVI	ATCGAT	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	634
BslFI	GGGAC	1 cut(s)	776
BslI	CCNNNNNNNGG	2 cut(s)	139, 140
BsmAI	GTCTC	2 cut(s)	173, 971
BsmFI	GGGAC	1 cut(s)	776
BsmI	GAATGC	1 cut(s)	1044
BsnI	GGCC	4 cut(s)	487, 569, 917, 985
Bsp1286I	GDGCHC	2 cut(s)	634, 869
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
Bsp19I	CCATGG	2 cut(s)	570, 1134
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	4 cut(s)	487, 569, 917, 985
BspCNI	CTCAG	4 cut(s)	100, 249, 937, 1058
BspDI	ATCGAT	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	303
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	2 cut(s)	669, 929
BsrGI	TGTACA	1 cut(s)	517
BsrI	ACTGG	2 cut(s)	332, 956
BssECI	CCNNGG	3 cut(s)	195, 570, 1134
BssMI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
BssNAI	GTATAC	1 cut(s)	994
BssT1I	CCWWGG	3 cut(s)	195, 570, 1134
Bst1107I	GTATAC	1 cut(s)	994
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	666, 727, 1073
Bst6I	CTCTTC	3 cut(s)	176, 333, 588
BstAUI	TGTACA	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	642
BstDEI	CTNAG	4 cut(s)	87, 236, 945, 1045
BstDSI	CCRYGG	2 cut(s)	570, 1134
BstF5I	GGATG	2 cut(s)	252, 906
BstFNI	CGCG	1 cut(s)	303
BstKTI	GATC	6 cut(s)	210, 466, 677, 832, 937, 1081
BstMAI	GTCTC	2 cut(s)	173, 971
BstMBI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
BstMWI	GCNNNNNNNGC	1 cut(s)	246
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	2 cut(s)	120, 810
BstUI	CGCG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	236, 295, 603
BstV2I	GAAGAC	2 cut(s)	120, 749
BstX2I	RGATCY	3 cut(s)	674, 934, 1078
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	3 cut(s)	674, 934, 1078
BstZ17I	GTATAC	1 cut(s)	994
Bsu15I	ATCGAT	1 cut(s)	159
BsuRI	GGCC	4 cut(s)	487, 569, 917, 985
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	570, 1134
BtsCI	GGATG	2 cut(s)	252, 906
BtsIMutI	CAGTG	4 cut(s)	339, 662, 963, 1078
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	938
CciI	TCATGA	1 cut(s)	546
Cfr13I	GGNCC	1 cut(s)	429
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	1 cut(s)	322
Csp6I	GTAC	4 cut(s)	299, 352, 518, 1099
CviQI	GTAC	4 cut(s)	299, 352, 518, 1099
DdeI	CTNAG	4 cut(s)	87, 236, 945, 1045
DpnI	GATC	6 cut(s)	209, 465, 676, 831, 936, 1080
DpnII	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
DraIII	CACNNNGTG	1 cut(s)	880
EaeI	YGGCCR	1 cut(s)	485
Eam1104I	CTCTTC	3 cut(s)	176, 333, 588
EarI	CTCTTC	3 cut(s)	176, 333, 588
Ecl136II	GAGCTC	1 cut(s)	632
Eco130I	CCWWGG	3 cut(s)	195, 570, 1134
Eco24I	GRGCYC	2 cut(s)	634, 869
Eco32I	GATATC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	429
Eco53kI	GAGCTC	1 cut(s)	632
Eco57I	CTGAAG	2 cut(s)	399, 480
EcoICRI	GAGCTC	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	276
EcoT14I	CCWWGG	3 cut(s)	195, 570, 1134
EcoT38I	GRGCYC	2 cut(s)	634, 869
ErhI	CCWWGG	3 cut(s)	195, 570, 1134
FaqI	GGGAC	1 cut(s)	776
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	993
Fnu4HI	GCNGC	3 cut(s)	250, 309, 617
FokI	GGATG	2 cut(s)	239, 913
FriOI	GRGCYC	2 cut(s)	634, 869
Fsp4HI	GCNGC	3 cut(s)	250, 309, 617
FspBI	CTAG	1 cut(s)	786
GluI	GCNGC	3 cut(s)	250, 309, 617
GsuI	CTGGAG	1 cut(s)	340
HaeIII	GGCC	4 cut(s)	487, 569, 917, 985
HgaI	GACGC	1 cut(s)	322
HinfI	GANTC	4 cut(s)	26, 125, 648, 789
HphI	GGTGA	3 cut(s)	83, 839, 895
Hpy166II	GTNNAC	2 cut(s)	994, 1129
Hpy188I	TCNGA	7 cut(s)	116, 379, 409, 610, 636, 679, 1048
Hpy8I	GTNNAC	2 cut(s)	994, 1129
Hpy99I	CGWCG	1 cut(s)	316
HpyAV	CCTTC	5 cut(s)	20, 337, 374, 465, 746
HpyCH4III	ACNGT	3 cut(s)	666, 727, 1073
HpyCH4V	TGCA	6 cut(s)	252, 530, 640, 736, 838, 874
HpyF10VI	GCNNNNNNNGC	1 cut(s)	246
HpyF3I	CTNAG	4 cut(s)	87, 236, 945, 1045
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
LmnI	GCTCC	1 cut(s)	116
Lsp1109I	GCAGC	3 cut(s)	236, 295, 603
LweI	GCATC	3 cut(s)	72, 261, 627
MaeI	CTAG	1 cut(s)	786
MaeIII	GTNAC	4 cut(s)	23, 721, 883, 1023
MalI	GATC	6 cut(s)	209, 465, 676, 831, 936, 1080
MboI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
MboII	GAAGA	7 cut(s)	120, 163, 350, 473, 605, 749, 1088
MflI	RGATCY	3 cut(s)	674, 934, 1078
MhlI	GDGCHC	2 cut(s)	634, 869
MlsI	TGGCCA	1 cut(s)	487
MluCI	AATT	6 cut(s)	137, 186, 317, 587, 1084, 1120
MluNI	TGGCCA	1 cut(s)	487
MlyI	GAGTC	3 cut(s)	20, 134, 798
MnlI	CCTC	7 cut(s)	67, 90, 96, 505, 813, 897, 1044
Mox20I	TGGCCA	1 cut(s)	487
MroXI	GAANNNNTTC	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	487
MseI	TTAA	5 cut(s)	99, 477, 564, 819, 924
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	487
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	1044
MvaI	CCWGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	246
NcoI	CCATGG	2 cut(s)	570, 1134
NdeII	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	4 cut(s)	23, 721, 883, 1023
PagI	TCATGA	1 cut(s)	546
PctI	GAATGC	1 cut(s)	1044
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	648
PkrI	GCNGC	3 cut(s)	251, 310, 618
PleI	GAGTC	3 cut(s)	20, 133, 797
PpsI	GAGTC	3 cut(s)	20, 133, 797
Psp124BI	GAGCTC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	3 cut(s)	674, 934, 1078
RsaI	GTAC	4 cut(s)	300, 353, 519, 1100
RsaNI	GTAC	4 cut(s)	299, 352, 518, 1099
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	634
SaqAI	TTAA	5 cut(s)	99, 477, 564, 819, 924
SatI	GCNGC	3 cut(s)	250, 309, 617
Sau3AI	GATC	6 cut(s)	207, 463, 674, 829, 934, 1078
Sau96I	GGNCC	1 cut(s)	429
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	3 cut(s)	20, 134, 798
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	2 cut(s)	634, 869
SfaNI	GCATC	3 cut(s)	72, 261, 627
SfcI	CTRYAG	2 cut(s)	120, 810
SinI	GGWCC	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	6 cut(s)	137, 186, 317, 587, 1084, 1120
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	786
SstI	GAGCTC	1 cut(s)	634
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	3 cut(s)	195, 570, 1134
TaaI	ACNGT	3 cut(s)	666, 727, 1073
TaqI	TCGA	3 cut(s)	159, 210, 448
TasI	AATT	6 cut(s)	137, 186, 317, 587, 1084, 1120
TatI	WGTACW	2 cut(s)	351, 517
TfiI	GAWTC	1 cut(s)	648
Tru1I	TTAA	5 cut(s)	99, 477, 564, 819, 924
Tru9I	TTAA	5 cut(s)	99, 477, 564, 819, 924
TscAI	CASTG	4 cut(s)	339, 669, 963, 1078
TseFI	GTSAC	4 cut(s)	23, 721, 883, 1023
TseI	GCWGC	3 cut(s)	249, 308, 616
Tsp45I	GTSAC	4 cut(s)	23, 721, 883, 1023
TspDTI	ATGAA	5 cut(s)	179, 356, 535, 537, 942
TspRI	CASTG	4 cut(s)	339, 669, 963, 1078
VpaK11BI	GGWCC	1 cut(s)	429
XapI	RAATTY	1 cut(s)	1084
XmiI	GTMKAC	1 cut(s)	993
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	1 cut(s)	786
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.