Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

3216444 .. 3216890

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g06020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTCGTTGAGTCACTTGAGTGAGATACTTGATAACATACTGAGTGAACTTGAAGCTATAGACCGTGAGTTGAGAACCTTGAGGTCAATAAGGCGTCAGATGGAGACTCTACAACGTAATATAGATCGAGCAGGAGCCGAAATCGAATCTTTGGATGATGTACTCCTTGCTCATGAAACTCCGGAGGACTGGTTGCACAACAGCAACAACAGCAACATTGTTGATGCAACTAGTGTGGTGGAGAAGATGACAAACGCTATGGTGAATGCTGATGCTGATGTTTGTTCGATTTGCTCGGAAGGTTTCCAAGGTTGTAGTAGTGGTACCACAACTCCTAAGCAACCCCCCTGCGGCCATGTCTACCACCAAGTTTGTTTAGCAACGTGGCTCTCCAGGTCCGAATCGTGCCCTCTCTGCCGCCGTATAATAAGAACAATTGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

4.9

Isoelectric Point (pI)

69.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	93 - 140	2e-09	RING-H2 zinc finger domain
zf-RING_2	PF13639	94 - 140	5e-11	Ring finger domain
zf-C3HC4_2	PF13923	95 - 139	4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	95 - 137	1.5e-06	RING-type zinc-finger
zf-C3HC4	PF00097	95 - 139	3.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	360
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	2 cut(s)	351, 418
AcoI	YGGCCR	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	162, 325
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	1 cut(s)	53
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	392
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw26I	GTCTC	1 cut(s)	98
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	1 cut(s)	352
Asp718I	GGTACC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	323
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	405
BciT130I	CCWGG	1 cut(s)	394
BcoDI	GTCTC	1 cut(s)	98
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	2 cut(s)	352, 418
BlsI	GCNGC	2 cut(s)	353, 419
Bme1390I	CCNGG	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	136, 325
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	214, 262
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	37, 100
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	1 cut(s)	307
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	194
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	307
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	410
BshFI	GGCC	1 cut(s)	354
BshNI	GGYRCC	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	182
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	1 cut(s)	98
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	351, 418
BspANI	GGCC	1 cut(s)	354
BspCNI	CTCAG	1 cut(s)	33
BspEI	TCCGGA	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	172
BspLI	GGNNCC	2 cut(s)	136, 325
BspT107I	GGYRCC	1 cut(s)	323
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	307
BssMI	GATC	1 cut(s)	124
BssNI	GRCGYC	1 cut(s)	94
BssT1I	CCWWGG	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	65
BstACI	GRCGYC	1 cut(s)	94
BstDEI	CTNAG	2 cut(s)	41, 336
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	98
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 414
BstNI	CCWGG	1 cut(s)	394
BstSCI	CCNGG	1 cut(s)	392
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	410
BsuRI	GGCC	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	160
CciI	TCATGA	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	2 cut(s)	161, 324
CspCI	CAANNNNNGTGG	4 cut(s)	216, 251, 353, 388
CviAII	CATG	2 cut(s)	173, 356
CviJI	RGCY	4 cut(s)	56, 137, 354, 388
CviKI_1	RGCY	4 cut(s)	56, 137, 354, 388
CviQI	GTAC	2 cut(s)	161, 324
DdeI	CTNAG	2 cut(s)	41, 336
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
EaeI	YGGCCR	1 cut(s)	352
Eco130I	CCWWGG	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	392
EcoT14I	CCWWGG	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	307
FaeI	CATG	2 cut(s)	176, 359
FaiI	YATR	7 cut(s)	38, 59, 122, 174, 260, 357, 425
FatI	CATG	2 cut(s)	172, 355
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	2 cut(s)	352, 418
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	352, 418
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	2 cut(s)	352, 418
GsuI	CTGGAG	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	354
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	83
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	2 cut(s)	176, 359
HinfI	GANTC	4 cut(s)	10, 106, 146, 401
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	2 cut(s)	47, 361
Hpy188I	TCNGA	3 cut(s)	99, 298, 400
Hpy188III	TCNNGA	2 cut(s)	173, 182
Hpy8I	GTNNAC	2 cut(s)	47, 361
HpyAV	CCTTC	1 cut(s)	293
HpyCH4III	ACNGT	1 cut(s)	65
HpyCH4IV	ACGT	2 cut(s)	115, 383
HpyCH4V	TGCA	2 cut(s)	196, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 414
HpyF3I	CTNAG	2 cut(s)	41, 336
HpySE526I	ACGT	2 cut(s)	115, 383
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	176, 359
Kpn2I	TCCGGA	1 cut(s)	181
KpnI	GGTACC	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	6 cut(s)	117, 175, 195, 361, 379, 406
LweI	GCATC	2 cut(s)	214, 262
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	2 cut(s)	115, 383
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	256
MfeI	CAATTG	1 cut(s)	435
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	1 cut(s)	435
MlyI	GAGTC	2 cut(s)	19, 100
MnlI	CCTC	3 cut(s)	75, 178, 420
MroI	TCCGGA	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	394
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	394
MwoI	GCNNNNNNNGC	2 cut(s)	210, 414
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	2 cut(s)	176, 359
NlaIV	GGNNCC	2 cut(s)	136, 325
NmuCI	GTSAC	1 cut(s)	11
OliI	CACNNNNGTG	1 cut(s)	18
PagI	TCATGA	1 cut(s)	172
PctI	GAATGC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	146, 401
PkrI	GCNGC	2 cut(s)	353, 419
PleI	GAGTC	2 cut(s)	18, 100
PpsI	GAGTC	2 cut(s)	18, 100
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	136, 325
PspPI	GGNCC	1 cut(s)	396
RsaI	GTAC	2 cut(s)	162, 325
RsaNI	GTAC	2 cut(s)	161, 324
RseI	CAYNNNNRTG	1 cut(s)	18
SatI	GCNGC	2 cut(s)	352, 418
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	2 cut(s)	19, 100
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	58, 80, 86, 118, 304, 313, 386, 398
SfaNI	GCATC	2 cut(s)	214, 262
SfcI	CTRYAG	1 cut(s)	57
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	16, 79
SmoI	CTYRAG	2 cut(s)	16, 79
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	1 cut(s)	435
SsiI	CCGC	2 cut(s)	351, 418
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	392
StyI	CCWWGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	65
TaiI	ACGT	2 cut(s)	118, 386
TaqI	TCGA	3 cut(s)	127, 144, 287
TasI	AATT	1 cut(s)	435
TatI	WGTACW	1 cut(s)	160
TauI	GCSGC	2 cut(s)	354, 420
TfiI	GAWTC	2 cut(s)	146, 401
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	396
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.