Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

5092372 .. 5092737

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016251

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGATAGTTTATCCGGAAACACATTTGTATCAGAGGCATACGTAATCGATCTGTGCTTTGATTTGGACGACGATGCGCTAACGCTGCCAGGGAATACAACCAGTTACTTGACTAATTCAAGAACGTCGTTGGAGAGTGATAGCACTAGTGATGGTTTGGTAGCCAACCTGCCGACGGTTGCCGCAGTTGAAGGTGTCATTTGCTCAGTTTGCATCGAAGGTTTTCGAGCAGAAGAAGAAGGAGGTGGTAGAGGTAAGCAAGTCCCTTGTGGCCATGTGTATCACGAAACTTGCATAGCAAAGTGGCTTTCACATTCCAATTCGTGCTCTCTCTGCCGCTCCACCATCTTCGAGCCTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

122

Amino Acids

12.95

Weight (kDa)

4.43

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	68 - 113	4.2e-12	Ring finger domain
zf-C3HC4	PF00097	68 - 112	1.4e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	68 - 109	1.3e-06	RING-type zinc-finger
zf-RING_11	PF17123	68 - 99	9.9e-06	RING-like zinc finger
zf-rbx1	PF12678	86 - 113	5.8e-07	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	339
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	2 cut(s)	183, 337
AcoI	YGGCCR	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgsI	TTSAA	2 cut(s)	120, 191
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	1 cut(s)	88
Alw21I	GWGCWC	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	329
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	146, 353
BciT130I	CCWGG	1 cut(s)	90
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	3 cut(s)	86, 183, 337
BlsI	GCNGC	3 cut(s)	87, 184, 338
Bme1390I	CCNGG	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	64, 222
Bsa29I	ATCGAT	1 cut(s)	48
BsaAI	YACGTR	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	89
BsaWI	WCCGGW	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	102
BseAI	TCCGGA	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	90
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	89
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseMII	CTCAG	1 cut(s)	219
BseNI	ACTGG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	72
BshFI	GGCC	1 cut(s)	273
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	183, 337
BspANI	GGCC	1 cut(s)	273
BspCNI	CTCAG	1 cut(s)	218
BspDI	ATCGAT	1 cut(s)	48
BspEI	TCCGGA	1 cut(s)	14
BspMI	ACCTGC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	339
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	89
BssMI	GATC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	178
BstBAI	YACGTR	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	205
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 210, 333
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSNI	TACGTA	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	72
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	177
CfoI	GCGC	1 cut(s)	79
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	4 cut(s)	164, 273, 307, 355
CviKI_1	RGCY	4 cut(s)	164, 273, 307, 355
DdeI	CTNAG	1 cut(s)	205
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	271
Eco105I	TACGTA	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	1 cut(s)	278
FaiI	YATR	3 cut(s)	40, 276, 296
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	274
Fnu4HI	GCNGC	3 cut(s)	86, 183, 337
Fsp4HI	GCNGC	3 cut(s)	86, 183, 337
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	3 cut(s)	86, 183, 337
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	15, 120, 284
Hpy99I	CGWCG	3 cut(s)	74, 130, 178
HpyAV	CCTTC	3 cut(s)	185, 212, 233
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	2 cut(s)	42, 125
HpyCH4V	TGCA	2 cut(s)	213, 294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 210, 333
HpyF3I	CTNAG	1 cut(s)	205
HpySE526I	ACGT	2 cut(s)	42, 125
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	77
Kpn2I	TCCGGA	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	5 cut(s)	28, 75, 102, 115, 182
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	64, 222
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	42, 125
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	1 cut(s)	51
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	1 cut(s)	49
MboII	GAAGA	3 cut(s)	245, 248, 340
MhlI	GDGCHC	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	2 cut(s)	115, 319
MluNI	TGGCCA	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	4 cut(s)	28, 236, 245, 366
Mox20I	TGGCCA	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	222
MscI	TGGCCA	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	3 cut(s)	85, 210, 333
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	278
PdmI	GAANNNNTTC	1 cut(s)	222
PkrI	GCNGC	3 cut(s)	87, 184, 338
Ppu21I	YACGTR	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
SatI	GCNGC	3 cut(s)	86, 183, 337
Sau3AI	GATC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	329
SetI	ASST	7 cut(s)	45, 128, 171, 196, 223, 247, 256
SfaNI	GCATC	2 cut(s)	64, 222
SnaBI	TACGTA	1 cut(s)	43
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	2 cut(s)	115, 319
SsiI	CCGC	2 cut(s)	183, 337
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	2 cut(s)	45, 128
TaqI	TCGA	4 cut(s)	48, 216, 226, 351
TasI	AATT	2 cut(s)	115, 319
TauI	GCSGC	2 cut(s)	185, 339
TseI	GCWGC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	222
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.