Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

4980137 .. 4980990

Gene Structure 854 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG065100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGCTAGTTTATCCAGAAACACATTTGTATCAGAGGCATACGCAATCGATCTGTGCTTTGATTTGGACGACGCGCTGACGCTGCCGGGGAATACAACCGGTTACCTGACTAATTCAAGAACGTCATTGGAGAGTGATAGTACTAGTGATGGTTTGGTAGCCAACCTGCCGACGGTTGCCGCAGTTGAAGGTGTCATTTGCTCGGTTTGTGTCGAAGGTTTTCGAGCAGAAGAAGAAGGAGGTGGTAGAGGTAAGCAAGTCCCTTGTGGCCATGTGTATCACGAAACTTGCATAGCAAAGTGGCTTTCACATTCCAATTCGTGCCCTCTCTGCCGCTCCACCATCTTCGATCCTCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

120

Amino Acids

12.82

Weight (kDa)

4.7

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	67 - 112	1.3e-13	Ring finger domain
zf-C3HC4	PF00097	67 - 111	2.5e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	67 - 109	2.4e-07	RING-type zinc-finger
zf-RING_5	PF14634	67 - 112	4.8e-06	zinc-RING finger domain
zf-rbx1	PF12678	86 - 112	6.6e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	86 - 111	7.1e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccBSI	CCGCTC	1 cut(s)	336
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	180, 334
AclWI	GGATC	1 cut(s)	344
AcoI	YGGCCR	1 cut(s)	268
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	117, 188
AhlI	ACTAGT	1 cut(s)	143
AlwI	GGATC	1 cut(s)	344
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	82
AsiGI	ACCGGT	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	1 cut(s)	270
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	143, 350
BcnI	CCSGG	1 cut(s)	87
BcuI	ACTAGT	1 cut(s)	143
BfaI	CTAG	2 cut(s)	6, 144
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	83, 180, 334
BlsI	GCNGC	3 cut(s)	84, 181, 335
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	87
BpuMI	CCSGG	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	354
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	86
BseJI	GATNNNNATC	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	270
BshTI	ACCGGT	1 cut(s)	98
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	86, 99
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	326
Bsp143I	GATC	2 cut(s)	49, 349
BspACI	CCGC	2 cut(s)	180, 334
BspANI	GGCC	1 cut(s)	270
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	74
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	2 cut(s)	49, 349
Bst4CI	ACNGT	1 cut(s)	175
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	52, 352
BstMBI	GATC	2 cut(s)	49, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 330
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	270
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	2 cut(s)	80, 88
Csp6I	GTAC	1 cut(s)	141
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	1 cut(s)	272
CviJI	RGCY	4 cut(s)	5, 161, 270, 304
CviKI_1	RGCY	4 cut(s)	5, 161, 270, 304
CviQI	GTAC	1 cut(s)	141
DpnI	GATC	2 cut(s)	51, 351
DpnII	GATC	2 cut(s)	49, 349
EaeI	YGGCCR	1 cut(s)	268
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	1 cut(s)	275
FaiI	YATR	3 cut(s)	40, 273, 293
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	1 cut(s)	271
Fnu4HI	GCNGC	3 cut(s)	83, 180, 334
Fsp4HI	GCNGC	3 cut(s)	83, 180, 334
FspBI	CTAG	2 cut(s)	6, 144
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	3 cut(s)	83, 180, 334
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	2 cut(s)	86, 99
HgaI	GACGC	2 cut(s)	80, 88
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	275
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	86, 99
Hpy188I	TCNGA	1 cut(s)	34
Hpy188III	TCNNGA	3 cut(s)	15, 117, 281
Hpy99I	CGWCG	2 cut(s)	74, 175
HpyAV	CCTTC	3 cut(s)	182, 209, 230
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 330
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	275
HspAI	GCGC	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	49, 349
LmnI	GCTCC	1 cut(s)	341
LpnPI	CCDG	5 cut(s)	28, 99, 112, 119, 179
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	6, 144
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	51, 351
MbiI	CCGCTC	1 cut(s)	336
MboI	GATC	2 cut(s)	49, 349
MboII	GAAGA	3 cut(s)	242, 245, 337
MhlI	GDGCHC	1 cut(s)	326
MlsI	TGGCCA	1 cut(s)	270
MluCI	AATT	2 cut(s)	112, 316
MluNI	TGGCCA	1 cut(s)	270
MnlI	CCTC	5 cut(s)	28, 233, 242, 336, 363
Mox20I	TGGCCA	1 cut(s)	270
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	270
Msp20I	TGGCCA	1 cut(s)	270
MspI	CCGG	2 cut(s)	86, 99
MspR9I	CCNGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	2 cut(s)	82, 330
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	49, 349
NlaIII	CATG	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	219
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	3 cut(s)	84, 181, 335
PspEI	GGTNACC	1 cut(s)	101
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SatI	GCNGC	3 cut(s)	83, 180, 334
Sau3AI	GATC	2 cut(s)	49, 349
ScaI	AGTACT	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	326
SetI	ASST	7 cut(s)	108, 125, 168, 193, 220, 244, 253
SpeI	ACTAGT	1 cut(s)	143
Sse9I	AATT	2 cut(s)	112, 316
SsiI	CCGC	2 cut(s)	180, 334
SspMI	CTAG	2 cut(s)	6, 144
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	4 cut(s)	48, 213, 223, 348
TasI	AATT	2 cut(s)	112, 316
TatI	WGTACW	1 cut(s)	140
TauI	GCSGC	2 cut(s)	182, 336
TseI	GCWGC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	2 cut(s)	6, 144
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.