E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G30460 AT3G30460 |
| fragaria_vesca | FvH4_1g06020 FvH4_1g06030 |
| malus_domestica | MD15G1195700.v1.1 |
| prunus_persica | Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1 |
| pyrus_communis | pycom02g05110 |
| rosa_chinensis | RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791 |
| rosa_laevigata | RLG00000016250 RLG00000016251 |
| rosa_multiflora | Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00149740 Rroxscaffold_2G00149750 |
| rosa_rugosa | Rorug02G0020800 Rorug02G0020900 |
| rosa_samantha | Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700 |
| rosa_wichuraiana | Rw2G005510 Rw2G005520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 98 |
| AciI | CCGC | 1 cut(s) | 108 |
| AcuI | CTGAAG | 1 cut(s) | 102 |
| AfaI | GTAC | 1 cut(s) | 7 |
| AgsI | TTSAA | 2 cut(s) | 185, 191 |
| AluBI | AGCT | 2 cut(s) | 30, 194 |
| AluI | AGCT | 2 cut(s) | 30, 194 |
| Alw21I | GWGCWC | 1 cut(s) | 217 |
| ApeKI | GCWGC | 2 cut(s) | 176, 194 |
| AseI | ATTAAT | 1 cut(s) | 38 |
| BanI | GGYRCC | 1 cut(s) | 98 |
| Bbv12I | GWGCWC | 1 cut(s) | 217 |
| BbvI | GCAGC | 2 cut(s) | 163, 181 |
| BceAI | ACGGC | 1 cut(s) | 375 |
| BclI | TGATCA | 1 cut(s) | 232 |
| BfmI | CTRYAG | 1 cut(s) | 177 |
| BisI | GCNGC | 2 cut(s) | 177, 195 |
| BlsI | GCNGC | 2 cut(s) | 178, 196 |
| BmiI | GGNNCC | 1 cut(s) | 100 |
| BmrI | ACTGGG | 1 cut(s) | 144 |
| BmuI | ACTGGG | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 1 cut(s) | 201 |
| Bse1I | ACTGG | 2 cut(s) | 139, 304 |
| BseMII | CTCAG | 1 cut(s) | 219 |
| BseNI | ACTGG | 2 cut(s) | 139, 304 |
| BseXI | GCAGC | 2 cut(s) | 163, 181 |
| BseYI | CCCAGC | 1 cut(s) | 19 |
| BshNI | GGYRCC | 1 cut(s) | 98 |
| BsiHKAI | GWGCWC | 1 cut(s) | 217 |
| BslFI | GGGAC | 1 cut(s) | 151 |
| BsmFI | GGGAC | 1 cut(s) | 151 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp143I | GATC | 1 cut(s) | 232 |
| BspACI | CCGC | 1 cut(s) | 108 |
| BspCNI | CTCAG | 1 cut(s) | 218 |
| BspHI | TCATGA | 1 cut(s) | 229 |
| BspLI | GGNNCC | 1 cut(s) | 100 |
| BspMAI | CTGCAG | 1 cut(s) | 181 |
| BspT107I | GGYRCC | 1 cut(s) | 98 |
| BsrI | ACTGG | 2 cut(s) | 139, 304 |
| BssMI | GATC | 1 cut(s) | 232 |
| Bst4CI | ACNGT | 2 cut(s) | 142, 172 |
| BstDEI | CTNAG | 1 cut(s) | 205 |
| BstKTI | GATC | 1 cut(s) | 235 |
| BstMBI | GATC | 1 cut(s) | 232 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 387 |
| BstNSI | RCATGY | 3 cut(s) | 166, 332, 348 |
| BstSFI | CTRYAG | 1 cut(s) | 177 |
| BstV1I | GCAGC | 2 cut(s) | 163, 181 |
| BtsI | GCAGTG | 1 cut(s) | 74 |
| BtsIMutI | CAGTG | 3 cut(s) | 68, 74, 297 |
| CciI | TCATGA | 1 cut(s) | 229 |
| Csp6I | GTAC | 1 cut(s) | 6 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 286, 321 |
| CviAII | CATG | 5 cut(s) | 163, 230, 329, 338, 345 |
| CviJI | RGCY | 5 cut(s) | 30, 158, 176, 194, 361 |
| CviKI_1 | RGCY | 5 cut(s) | 30, 158, 176, 194, 361 |
| CviQI | GTAC | 1 cut(s) | 6 |
| DdeI | CTNAG | 1 cut(s) | 205 |
| DpnI | GATC | 1 cut(s) | 234 |
| DpnII | GATC | 1 cut(s) | 232 |
| Eco57I | CTGAAG | 1 cut(s) | 102 |
| EcoT22I | ATGCAT | 1 cut(s) | 350 |
| FaeI | CATG | 5 cut(s) | 166, 233, 332, 341, 348 |
| FaqI | GGGAC | 1 cut(s) | 151 |
| FatI | CATG | 5 cut(s) | 162, 229, 328, 337, 344 |
| FbaI | TGATCA | 1 cut(s) | 232 |
| Fnu4HI | GCNGC | 2 cut(s) | 177, 195 |
| Fsp4HI | GCNGC | 2 cut(s) | 177, 195 |
| GluI | GCNGC | 2 cut(s) | 177, 195 |
| GsaI | CCCAGC | 1 cut(s) | 23 |
| Hin1II | CATG | 5 cut(s) | 166, 233, 332, 341, 348 |
| HincII | GTYRAC | 1 cut(s) | 145 |
| HindII | GTYRAC | 1 cut(s) | 145 |
| HpaI | GTTAAC | 1 cut(s) | 145 |
| Hpy166II | GTNNAC | 2 cut(s) | 145, 334 |
| Hpy188I | TCNGA | 1 cut(s) | 244 |
| Hpy188III | TCNNGA | 1 cut(s) | 230 |
| Hpy8I | GTNNAC | 2 cut(s) | 145, 334 |
| HpyCH4III | ACNGT | 2 cut(s) | 142, 172 |
| HpyCH4V | TGCA | 4 cut(s) | 131, 179, 197, 348 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 387 |
| HpyF3I | CTNAG | 1 cut(s) | 205 |
| Hsp92II | CATG | 5 cut(s) | 166, 233, 332, 341, 348 |
| Ksp22I | TGATCA | 1 cut(s) | 232 |
| KspAI | GTTAAC | 1 cut(s) | 145 |
| Kzo9I | GATC | 1 cut(s) | 232 |
| LpnPI | CCDG | 5 cut(s) | 33, 93, 115, 120, 285 |
| Lsp1109I | GCAGC | 2 cut(s) | 163, 181 |
| MalI | GATC | 1 cut(s) | 234 |
| MboI | GATC | 1 cut(s) | 232 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| MluCI | AATT | 3 cut(s) | 198, 367, 409 |
| MmeI | TCCRAC | 1 cut(s) | 39 |
| MnlI | CCTC | 3 cut(s) | 89, 393, 413 |
| Mph1103I | ATGCAT | 1 cut(s) | 350 |
| MseI | TTAA | 3 cut(s) | 38, 144, 412 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 387 |
| NdeII | GATC | 1 cut(s) | 232 |
| NlaIII | CATG | 5 cut(s) | 166, 233, 332, 341, 348 |
| NlaIV | GGNNCC | 1 cut(s) | 100 |
| NsiI | ATGCAT | 1 cut(s) | 350 |
| NspI | RCATGY | 3 cut(s) | 166, 332, 348 |
| PagI | TCATGA | 1 cut(s) | 229 |
| PkrI | GCNGC | 2 cut(s) | 178, 196 |
| PshBI | ATTAAT | 1 cut(s) | 38 |
| PspFI | CCCAGC | 1 cut(s) | 19 |
| PspN4I | GGNNCC | 1 cut(s) | 100 |
| PstI | CTGCAG | 1 cut(s) | 181 |
| RsaI | GTAC | 1 cut(s) | 7 |
| RsaNI | GTAC | 1 cut(s) | 6 |
| SaqAI | TTAA | 3 cut(s) | 38, 144, 412 |
| SatI | GCNGC | 2 cut(s) | 177, 195 |
| Sau3AI | GATC | 1 cut(s) | 232 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SetI | ASST | 4 cut(s) | 32, 100, 196, 223 |
| SfcI | CTRYAG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 1 cut(s) | 216 |
| SmoI | CTYRAG | 1 cut(s) | 216 |
| Sse9I | AATT | 3 cut(s) | 198, 367, 409 |
| SsiI | CCGC | 1 cut(s) | 108 |
| TaaI | ACNGT | 2 cut(s) | 142, 172 |
| TasI | AATT | 3 cut(s) | 198, 367, 409 |
| Tru1I | TTAA | 3 cut(s) | 38, 144, 412 |
| Tru9I | TTAA | 3 cut(s) | 38, 144, 412 |
| TscAI | CASTG | 3 cut(s) | 75, 81, 304 |
| TseI | GCWGC | 2 cut(s) | 176, 194 |
| TspDTI | ATGAA | 5 cut(s) | 24, 215, 267, 299, 354 |
| TspRI | CASTG | 3 cut(s) | 75, 81, 304 |
| VspI | ATTAAT | 1 cut(s) | 38 |
| XceI | RCATGY | 3 cut(s) | 166, 332, 348 |
| Zsp2I | ATGCAT | 1 cut(s) | 350 |