Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005821

Physical Location & Seq

Genomic Coordinates Reverse (-)

5488260 .. 5488628

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG065500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTAGTTTATCCAGAAACACATTTGTATCAGAGGCATACGCAATCGATCTGTGCTTTGATTTGGACGACGCGCTGGCGCTGCCGGAGAATACAGCCGGTTACCAGACTAGTTCAAGAACGTCGTCGGAGAGTTATTCTACTAGTGATGCTTTGGTAGCAAACCTGCAGACGGTTGCTACAGTTGAAGGTGCCATTTGCTCTGTCTGTGTGGAAGGTTTTCAGGAAGAAGAAGAAGGAGCTATAGGTGATAGAGGTAAGCGGGTTCCTTGTGGCCATGTCTATCACGAAACTTGCATAGCAAAGTGGCTTTCACACTCCAACTCTTGCCCTCTCTGCCGCTCCACCATCTTCGATCCTCATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

122

Amino Acids

13.18

Weight (kDa)

4.56

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	67 - 114	5.3e-14	Ring finger domain
zf-C3HC4	PF00097	67 - 113	1.6e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	67 - 111	1.8e-07	RING-type zinc-finger
zf-rbx1	PF12678	88 - 114	7.8e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	89 - 113	5.4e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30460 AT3G30460
fragaria_vesca	FvH4_1g06020 FvH4_1g06030
malus_domestica	MD15G1195700.v1.1
prunus_persica	Prupe.7G220800_v2.0.a1 Prupe.7G220900_v2.0.a1
pyrus_communis	pycom02g05110
rosa_chinensis	RchiOBHm_Chr2g0091781 RchiOBHm_Chr2g0091791
rosa_laevigata	RLG00000016250 RLG00000016251
rosa_multiflora	Rmu_sc0018637.1_g000002 Rmu_sc0020936.1_g000001
rosa_roxburghii	Rroxscaffold_2G00149740 Rroxscaffold_2G00149750
rosa_rugosa	Rorug02G0020800 Rorug02G0020900
rosa_samantha	Rh2AG065500 Rh2AG065600 Rh2BG065000 Rh2BG065100 Rh2CG066400 Rh2CG066500 Rh2DG064600 Rh2DG064700
rosa_wichuraiana	Rw2G005510 Rw2G005520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	191
AccBSI	CCGCTC	1 cut(s)	342
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	262, 340
AclWI	GGATC	1 cut(s)	350
AcoI	YGGCCR	1 cut(s)	274
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	2 cut(s)	117, 188
AhlI	ACTAGT	2 cut(s)	110, 143
AluBI	AGCT	1 cut(s)	242
AluI	AGCT	1 cut(s)	242
AlwI	GGATC	1 cut(s)	350
AoxI	GGCC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	82
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	2 cut(s)	76, 82
AsuHPI	GGTGA	1 cut(s)	260
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BalI	TGGCCA	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	1 cut(s)	356
BcuI	ACTAGT	2 cut(s)	110, 143
BfaI	CTAG	3 cut(s)	6, 111, 144
BfmI	CTRYAG	3 cut(s)	167, 180, 243
BfoI	RGCGCY	1 cut(s)	83
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	83, 340
BlsI	GCNGC	2 cut(s)	84, 341
BmiI	GGNNCC	2 cut(s)	193, 267
BmsI	GCATC	1 cut(s)	139
Bsa29I	ATCGAT	1 cut(s)	48
BsaBI	GATNNNNATC	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse118I	RCCGGY	1 cut(s)	98
Bse8I	GATNNNNATC	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	1 cut(s)	276
BshNI	GGYRCC	1 cut(s)	191
BshVI	ATCGAT	1 cut(s)	48
BsiSI	CCGG	2 cut(s)	86, 99
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	49, 355
BspACI	CCGC	2 cut(s)	262, 340
BspANI	GGCC	1 cut(s)	276
BspDI	ATCGAT	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	193, 267
BspMAI	CTGCAG	1 cut(s)	171
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	191
BsrBI	CCGCTC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	98
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	2 cut(s)	49, 355
Bst4CI	ACNGT	2 cut(s)	175, 184
BstC8I	GCNNGC	1 cut(s)	78
BstEII	GGTNACC	1 cut(s)	101
BstFNI	CGCG	1 cut(s)	74
BstH2I	RGCGCY	1 cut(s)	83
BstHHI	GCGC	2 cut(s)	76, 82
BstKTI	GATC	2 cut(s)	52, 358
BstMBI	GATC	2 cut(s)	49, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 158, 336
BstPI	GGTNACC	1 cut(s)	101
BstSFI	CTRYAG	3 cut(s)	167, 180, 243
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	69
Bsu15I	ATCGAT	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	276
BsuTUI	ATCGAT	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	78
CfoI	GCGC	2 cut(s)	76, 82
Cfr10I	RCCGGY	1 cut(s)	98
ClaI	ATCGAT	1 cut(s)	48
CseI	GACGC	1 cut(s)	80
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	5 cut(s)	5, 98, 242, 276, 310
CviKI_1	RGCY	5 cut(s)	5, 98, 242, 276, 310
DpnI	GATC	2 cut(s)	51, 357
DpnII	GATC	2 cut(s)	49, 355
EaeI	YGGCCR	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
FaeI	CATG	1 cut(s)	281
FaiI	YATR	4 cut(s)	40, 245, 279, 299
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	2 cut(s)	83, 340
Fsp4HI	GCNGC	2 cut(s)	83, 340
FspBI	CTAG	3 cut(s)	6, 111, 144
GlaI	GCGC	2 cut(s)	75, 81
GluI	GCNGC	2 cut(s)	83, 340
HaeII	RGCGCY	1 cut(s)	83
HaeIII	GGCC	1 cut(s)	276
HapII	CCGG	2 cut(s)	86, 99
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	2 cut(s)	76, 82
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	2 cut(s)	74, 80
HinP1I	GCGC	2 cut(s)	74, 80
HpaII	CCGG	2 cut(s)	86, 99
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	34, 130
Hpy188III	TCNNGA	4 cut(s)	15, 117, 224, 287
Hpy99I	CGWCG	3 cut(s)	74, 127, 130
HpyAV	CCTTC	3 cut(s)	182, 209, 230
HpyCH4III	ACNGT	2 cut(s)	175, 184
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	169, 297
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 158, 336
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	2 cut(s)	74, 80
Kzo9I	GATC	2 cut(s)	49, 355
LmnI	GCTCC	2 cut(s)	239, 347
LpnPI	CCDG	7 cut(s)	28, 62, 99, 112, 119, 179, 209
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	3 cut(s)	6, 111, 144
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	51, 357
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	2 cut(s)	49, 355
MboII	GAAGA	4 cut(s)	239, 242, 245, 343
MlsI	TGGCCA	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	108, 345
MnlI	CCTC	4 cut(s)	28, 248, 342, 369
Mox20I	TGGCCA	1 cut(s)	276
MroXI	GAANNNNTTC	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	276
Msp20I	TGGCCA	1 cut(s)	276
MspI	CCGG	2 cut(s)	86, 99
MvnI	CGCG	1 cut(s)	74
MwoI	GCNNNNNNNGC	3 cut(s)	82, 158, 336
NdeII	GATC	2 cut(s)	49, 355
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	2 cut(s)	193, 267
PdmI	GAANNNNTTC	1 cut(s)	219
PkrI	GCNGC	2 cut(s)	84, 341
PspEI	GGTNACC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	193, 267
PstI	CTGCAG	1 cut(s)	171
SatI	GCNGC	2 cut(s)	83, 340
Sau3AI	GATC	2 cut(s)	49, 355
SetI	ASST	7 cut(s)	125, 168, 193, 220, 244, 250, 259
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	3 cut(s)	167, 180, 243
SpeI	ACTAGT	2 cut(s)	110, 143
SsiI	CCGC	2 cut(s)	262, 340
SspMI	CTAG	3 cut(s)	6, 111, 144
TaaI	ACNGT	2 cut(s)	175, 184
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	2 cut(s)	48, 354
TauI	GCSGC	1 cut(s)	342
TseI	GCWGC	1 cut(s)	82
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	6, 111, 144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.