Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011174

Physical Location & Seq

Genomic Coordinates Forward (+)

15367546 .. 15370157

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCTGAGGTAAACGGAGATTTCCCCGTTCCTAGTTTCGCCGACGGGACCGGTTCTGTTTCCGCCGGACTTGACTTGCTCGTTGAGAGATCGATTCACGAAGCTAGGTCCACAGAGCCAGATGCTTCAACTCAACTTACTATTATCTTTGGTGGGAGTTGTAGAGTCTTCAATGGTGTCCCTGCACAAAAGGTTCAAGAAATCATTCGCATCGCTTTTGCTGGTAAACAGACGAAGAATGTGACCGGTATCAATCCAGCACTGAACAGAGCTCTTTCTTTCTCAACTGTAGCTGATCTTCCAATTGCTAGGAGACGTTCGCTTCAAAGATTTCTCGAGAAGAGACGGGACAGGTCCACGAAGCCAGATGGTTCAATGATCCTTCCAAGTCAACTAACCATTATTTTTGGTGGGAGTTTTAGCGTATTTGATGGTATTCCAGCTGAAAAGGTTCAAGAAATTCTGCATATCGCTGCTGCAGCTAAAGCCACTGAGACAATTAATTTGACCAGTATAAATCCAGCATTAAAGAGAGCTATTTCATTCTCAAACGCATCAACAGTAGCTTGCGTATCGACAGCAGATGTGCCAATTGCTAGGAGACGTTCACTTCAAAGATTTTTTGAGAAAAGACGGCATCGATTTGTCCACACGAAGCCTTACTCTGCTACGACTTCGGAAGCAGACAAAAATGAAACCAGCCCCATTGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

CCT_2 tify

Protein Analysis

238

Amino Acids

25.84

Weight (kDa)

10.0

Isoelectric Point (pI)

60.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tify	PF06200	41 - 73	5.7e-13	tify domain
Jas_motif	PF09425	111 - 136	3.7e-11	Jas motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011174)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43440 AT3G43440 AT5G20900
fragaria_vesca	FvH4_1g09690
malus_domestica	MD02G1105900.v1.1 MD15G1225800.v1.1
prunus_persica	Prupe.7G189200_v2.0.a1
pyrus_communis	pycom02g08380 pycom15g20070
rosa_chinensis	RchiOBHm_Chr2g0096551
rosa_laevigata	RLG00000016648
rosa_multiflora	Rmu_sc0004096.1_g000006
rosa_roxburghii	Rroxscaffold_2G00145540
rosa_rugosa	Rorug02G0058400 Rorug02G0058400
rosa_samantha	Rh2AG105600 Rh2BG108100 Rh2CG109900 Rh2DG108700
rosa_wichuraiana	Rw2G008170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	373
AcsI	RAATTY	1 cut(s)	459
AgeI	ACCGGT	2 cut(s)	50, 245
AgsI	TTSAA	7 cut(s)	129, 172, 197, 326, 375, 455, 614
AluBI	AGCT	7 cut(s)	104, 272, 293, 443, 482, 536, 566
AluI	AGCT	7 cut(s)	104, 272, 293, 443, 482, 536, 566
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	4 cut(s)	307, 337, 488, 595
AlwI	GGATC	1 cut(s)	373
Ama87I	CYCGRG	1 cut(s)	335
ApeKI	GCWGC	3 cut(s)	473, 476, 479
ApoI	RAATTY	1 cut(s)	459
ArsI	GACNNNNNNTTYG	2 cut(s)	487, 519
AseI	ATTAAT	1 cut(s)	501
AsiGI	ACCGGT	2 cut(s)	50, 245
Asp700I	GAANNNNTTC	2 cut(s)	204, 450
AspS9I	GGNCC	3 cut(s)	48, 108, 354
AvaI	CYCGRG	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	48, 108, 354
BanII	GRGCYC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	282, 314
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	460, 463, 491
BccI	CCATC	2 cut(s)	362, 425
BceAI	ACGGC	1 cut(s)	650
BcoDI	GTCTC	4 cut(s)	307, 337, 488, 595
BfaI	CTAG	4 cut(s)	33, 105, 309, 597
BfmI	CTRYAG	2 cut(s)	288, 477
BisI	GCNGC	3 cut(s)	474, 477, 480
BlsI	GCNGC	3 cut(s)	475, 478, 481
Bme18I	GGWCC	3 cut(s)	48, 108, 354
BmeT110I	CYCGRG	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	48, 108, 354
BmiI	GGNNCC	1 cut(s)	49
BmsI	GCATC	4 cut(s)	112, 219, 563, 646
BpiI	GAAGAC	1 cut(s)	160
Bpu10I	CCTNAGC	1 cut(s)	6
Bsa29I	ATCGAT	2 cut(s)	92, 640
BsaWI	WCCGGW	2 cut(s)	50, 245
Bse118I	RCCGGY	2 cut(s)	50, 245
Bse1I	ACTGG	1 cut(s)	510
BseCI	ATCGAT	2 cut(s)	92, 640
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	510
BseXI	GCAGC	3 cut(s)	460, 463, 491
BsgI	GTGCAG	1 cut(s)	168
BshTI	ACCGGT	2 cut(s)	50, 245
BshVI	ATCGAT	2 cut(s)	92, 640
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	335
BsiSI	CCGG	3 cut(s)	51, 66, 246
BslFI	GGGAC	3 cut(s)	61, 164, 362
BsmAI	GTCTC	4 cut(s)	307, 337, 488, 595
BsmBI	CGTCTC	3 cut(s)	307, 337, 595
BsmFI	GGGAC	3 cut(s)	61, 164, 362
BsoBI	CYCGRG	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	89, 295, 378
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	484
BspDI	ATCGAT	2 cut(s)	92, 640
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	481
BspPI	GGATC	1 cut(s)	373
BsrFI	RCCGGY	2 cut(s)	50, 245
BsrI	ACTGG	1 cut(s)	510
BssAI	RCCGGY	2 cut(s)	50, 245
BssMI	GATC	3 cut(s)	89, 295, 378
Bst4CI	ACNGT	2 cut(s)	289, 562
Bst6I	CTCTTC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	2 cut(s)	6, 492
BstKTI	GATC	3 cut(s)	92, 298, 381
BstMAI	GTCTC	4 cut(s)	307, 337, 488, 595
BstMBI	GATC	3 cut(s)	89, 295, 378
BstMWI	GCNNNNNNNGC	2 cut(s)	479, 485
BstSFI	CTRYAG	2 cut(s)	288, 477
BstV1I	GCAGC	3 cut(s)	460, 463, 491
BstV2I	GAAGAC	1 cut(s)	160
Bsu15I	ATCGAT	2 cut(s)	92, 640
BsuTUI	ATCGAT	2 cut(s)	92, 640
BtgZI	GCGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	260, 489
Cac8I	GCNNGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	50, 245
Cfr13I	GGNCC	3 cut(s)	48, 108, 354
ClaI	ATCGAT	2 cut(s)	92, 640
CspAI	ACCGGT	2 cut(s)	50, 245
CviAII	CATG	1 cut(s)	714
DdeI	CTNAG	2 cut(s)	6, 492
DpnI	GATC	3 cut(s)	91, 297, 380
DpnII	GATC	3 cut(s)	89, 295, 378
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	274
Eco47I	GGWCC	3 cut(s)	48, 108, 354
Eco53kI	GAGCTC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	274
Esp3I	CGTCTC	3 cut(s)	307, 337, 595
FaeI	CATG	1 cut(s)	717
FaiI	YATR	3 cut(s)	468, 515, 715
FaqI	GGGAC	3 cut(s)	61, 164, 362
FatI	CATG	1 cut(s)	713
Fnu4HI	GCNGC	3 cut(s)	474, 477, 480
FriOI	GRGCYC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	474, 477, 480
FspBI	CTAG	4 cut(s)	33, 105, 309, 597
GluI	GCNGC	3 cut(s)	474, 477, 480
HapII	CCGG	3 cut(s)	51, 66, 246
Hin1II	CATG	1 cut(s)	717
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	2 cut(s)	94, 165
HpaII	CCGG	3 cut(s)	51, 66, 246
Hpy166II	GTNNAC	7 cut(s)	13, 111, 227, 357, 392, 608, 649
Hpy188I	TCNGA	1 cut(s)	679
Hpy188III	TCNNGA	5 cut(s)	98, 197, 335, 337, 455
Hpy8I	GTNNAC	7 cut(s)	13, 111, 227, 357, 392, 608, 649
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	289, 562
HpyCH4IV	ACGT	2 cut(s)	316, 604
HpyCH4V	TGCA	3 cut(s)	185, 466, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	479, 485
HpyF3I	CTNAG	2 cut(s)	6, 492
HpySE526I	ACGT	2 cut(s)	316, 604
Hsp92II	CATG	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	89, 295, 378
Lsp1109I	GCAGC	3 cut(s)	460, 463, 491
LweI	GCATC	4 cut(s)	112, 219, 563, 646
MaeI	CTAG	4 cut(s)	33, 105, 309, 597
MaeII	ACGT	2 cut(s)	316, 604
MaeIII	GTNAC	2 cut(s)	241, 709
MalI	GATC	3 cut(s)	91, 297, 380
MboI	GATC	3 cut(s)	89, 295, 378
MboII	GAAGA	4 cut(s)	160, 247, 290, 352
MfeI	CAATTG	2 cut(s)	303, 591
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	5 cut(s)	303, 459, 498, 502, 591
MlyI	GAGTC	1 cut(s)	174
MroXI	GAANNNNTTC	2 cut(s)	204, 450
MseI	TTAA	2 cut(s)	501, 527
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	3 cut(s)	51, 66, 246
MunI	CAATTG	2 cut(s)	303, 591
MwoI	GCNNNNNNNGC	2 cut(s)	479, 485
NdeII	GATC	3 cut(s)	89, 295, 378
NlaIII	CATG	1 cut(s)	717
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	241, 709
PaeR7I	CTCGAG	1 cut(s)	335
PdmI	GAANNNNTTC	2 cut(s)	204, 450
PfeI	GAWTC	1 cut(s)	94
PinAI	ACCGGT	2 cut(s)	50, 245
PkrI	GCNGC	3 cut(s)	475, 478, 481
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PshBI	ATTAAT	1 cut(s)	501
Psp124BI	GAGCTC	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	49
PspPI	GGNCC	3 cut(s)	48, 108, 354
PstI	CTGCAG	1 cut(s)	481
PvuII	CAGCTG	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	501, 527
SatI	GCNGC	3 cut(s)	474, 477, 480
Sau3AI	GATC	3 cut(s)	89, 295, 378
Sau96I	GGNCC	3 cut(s)	48, 108, 354
SchI	GAGTC	1 cut(s)	174
SduI	GDGCHC	1 cut(s)	274
SfaNI	GCATC	4 cut(s)	112, 219, 563, 646
SfcI	CTRYAG	2 cut(s)	288, 477
Sfr274I	CTCGAG	1 cut(s)	335
SinI	GGWCC	3 cut(s)	48, 108, 354
SlaI	CTCGAG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	5 cut(s)	303, 459, 498, 502, 591
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	4 cut(s)	33, 105, 309, 597
SstI	GAGCTC	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	289, 562
TaiI	ACGT	2 cut(s)	319, 607
TaqI	TCGA	4 cut(s)	92, 336, 575, 640
TasI	AATT	5 cut(s)	303, 459, 498, 502, 591
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	501, 527
Tru9I	TTAA	2 cut(s)	501, 527
TscAI	CASTG	2 cut(s)	267, 496
TseFI	GTSAC	2 cut(s)	241, 709
TseI	GCWGC	3 cut(s)	473, 476, 479
Tsp45I	GTSAC	2 cut(s)	241, 709
TspDTI	ATGAA	2 cut(s)	531, 708
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	267, 496
VpaK11BI	GGWCC	3 cut(s)	48, 108, 354
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	1 cut(s)	459
XhoI	CTCGAG	1 cut(s)	335
XmnI	GAANNNNTTC	2 cut(s)	204, 450
XspI	CTAG	4 cut(s)	33, 105, 309, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.